Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0499 Cannabis sativa HOM05D007559 ORTHO05D009642 4.3e-134 481.9 352 100.0
CANSAT35G1217 Cannabis sativa HOM05D007559 ORTHO05D009642 3.7e-93 345.9 177 97.2
FAN05G3361 Fragaria x ananassa HOM05D007559 ORTHO05D009642 1.0e-55 221.5 171 64.3
FvH4_6g10340 Fragaria vesca HOM05D007559 ORTHO05D009642 2.0e-54 217.2 165 63.6
FAN14G4426 Fragaria x ananassa HOM05D007559 ORTHO05D009642 2.0e-54 217.2 165 63.6
Haze_21112 Corylus avellana HOM05D007559 ORTHO05D009642 2.2e-53 213.8 172 59.9
Cfa017088 Carpinus fangiana HOM05D007559 ORTHO05D009642 1.4e-52 211.1 172 59.3
FAN09G3233 Fragaria x ananassa HOM05D007559 ORTHO05D009642 1.6e-51 207.6 168 61.3
Potri.006G106400 Populus trichocarpa HOM05D007559 ORTHO05D009642 2.7e-51 206.8 176 57.4
FAN02G3738 Fragaria x ananassa HOM05D007559 ORTHO05D009642 3.5e-51 206.5 161 62.7
Sabra06G0082800 Salix brachista HOM05D007559 ORTHO05D009642 2.9e-50 203.4 176 56.8
FAN09G4021 Fragaria x ananassa HOM05D007559 ORTHO05D009642 3.8e-50 203.0 160 62.5
Prupe.6G287300 Prunus persica HOM05D007559 ORTHO05D009642 8.5e-50 201.8 163 58.3
Duzib128G0753 Durio zibethinus HOM05D007559 ORTHO05D009642 6.1e-48 195.7 176 58.0
COL.COLO4_14426 Corchorus olitorius HOM05D007559 ORTHO05D009642 4.0e-47 193.0 176 56.2
Eucgr.A00644 Eucalyptus grandis HOM05D007559 ORTHO05D009642 6.8e-47 192.2 175 57.1
MD04G1169100 Malus domestica HOM05D007559 ORTHO05D009642 8.8e-47 191.8 170 57.1
TWI77G1038 Tripterygium wilfordii HOM05D007559 ORTHO05D009642 4.4e-46 189.5 174 52.9
Gorai.002G267400 Gossypium raimondii HOM05D007559 ORTHO05D009642 7.5e-46 188.7 176 53.4
Gohir.A01G230700 Gossypium hirsutum HOM05D007559 ORTHO05D009642 9.8e-46 188.3 176 53.4
Ciclev10013613m.g Citrus clementina HOM05D007559 ORTHO05D009642 1.3e-45 188.0 168 55.4
Psat3g121880 Pisum sativum HOM05D007559 ORTHO05D009642 2.2e-45 187.2 172 54.7
Sc02g0000710 Simmondsia chinensis HOM05D007559 ORTHO05D009642 2.2e-45 187.2 176 51.1
Lj1g0021884 Lotus japonicus HOM05D007559 ORTHO05D009642 6.3e-45 185.7 167 55.1
MD12G1182800 Malus domestica HOM05D007559 ORTHO05D009642 1.1e-44 184.9 163 57.1
Glyma.09G279300 Glycine max HOM05D007559 ORTHO05D009642 2.4e-44 183.7 175 52.6
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 2.4e-44 183.7 175 48.0
Thecc.05G003800 Theobroma cacao HOM05D007559 ORTHO05D009642 7.0e-44 182.2 173 54.9
Dinv35437 Davidia involucrata HOM05D007559 ORTHO05D009642 1.2e-43 181.4 164 54.3
Nn2g13304 Nelumbo nucifera HOM05D007559 ORTHO05D009642 2.0e-43 180.6 170 52.9
QL07p033351 Quercus lobata HOM05D007559 ORTHO05D009642 2.0e-43 180.6 164 53.7
Ca_07735_v3 Cicer arietinum L. HOM05D007559 ORTHO05D009642 3.5e-43 179.9 172 51.7
Manes.09G114100 Manihot esculenta HOM05D007559 ORTHO05D009642 1.7e-42 177.6 164 53.7
Ah.08g209840 Amaranthus hybridus HOM05D007559 ORTHO05D009642 2.2e-42 177.2 171 52.0
CsaV3_3G033270 Cucumis sativus L. HOM05D007559 ORTHO05D009642 3.8e-42 176.4 170 52.4
VMungo1383G3445 Vigna mungo HOM05D007559 ORTHO05D009642 3.8e-42 176.4 169 52.1
SalBow6G7175 Salvia bowleyana HOM05D007559 ORTHO05D009642 5.0e-42 176.0 176 49.4
Atru.chr8.2360 Acer truncatum HOM05D007559 ORTHO05D009642 8.5e-42 175.3 168 50.0
TPR.G18675 Trifolium pratense HOM05D007559 ORTHO05D009642 1.9e-41 174.1 173 50.3
TAR623G0780 Trochodendron aralioides HOM05D007559 ORTHO05D009642 1.9e-41 174.1 174 52.3
TAR623G1207 Trochodendron aralioides HOM05D007559 ORTHO05D009642 1.9e-41 174.1 174 52.3
MELO3C031038.2 Cucumis melo HOM05D007559 ORTHO05D009642 2.5e-41 173.7 174 51.1
Medtr7g072070 Medicago truncatula HOM05D007559 ORTHO05D009642 7.2e-41 172.2 167 51.5
Phvul.008G089500 Phaseolus vulgaris HOM05D007559 ORTHO05D009642 7.2e-41 172.2 167 51.5
AL4G35690 Arabidopsis lyrata HOM05D007559 ORTHO05D009642 4.7e-40 169.5 172 52.3
Phvul.009G202600 Phaseolus vulgaris HOM05D007559 ORTHO05D009642 2.3e-39 167.2 166 49.4
CARHR133080 Cardamine hirsuta HOM05D007559 ORTHO05D009642 4.0e-39 166.4 175 50.3
AUR62006326 Chenopodium quinoa HOM05D007559 ORTHO05D009642 1.2e-38 164.9 153 53.6
Sed0024504 Sechium edule HOM05D007559 ORTHO05D009642 1.5e-38 164.5 170 48.2
Lalb_Chr05g0229371 Lupinus albus HOM05D007559 ORTHO05D009642 2.0e-38 164.1 167 49.1
Thhalv10017948m.g Eutrema salsugineum HOM05D007559 ORTHO05D009642 4.4e-38 162.9 171 51.5
DCAR_028899 Daucus carota HOM05D007559 ORTHO05D009642 5.7e-38 162.5 175 50.3
AT2G38420 Arabidopsis thaliana HOM05D007559 ORTHO05D009642 1.7e-37 161.0 170 50.6
Aqoxy2G02373 Aquilegia oxysepala HOM05D007559 ORTHO05D009642 1.4e-36 157.9 167 50.3
Lj2C64T2 Lonicera japonica HOM05D007559 ORTHO05D009642 1.4e-36 157.9 157 51.6
MSTRG.5528 Avicennia marina HOM05D007559 ORTHO05D009642 2.4e-36 157.1 175 47.4
TAR623G1276 Trochodendron aralioides HOM05D007559 ORTHO05D009642 2.4e-36 157.1 167 48.5
HanXRQChr12g0363701 Helianthus annuus HOM05D007559 ORTHO05D009642 7.0e-36 155.6 175 47.4
Sp4g20740 Schrenkiella parvula HOM05D007559 ORTHO05D009642 7.0e-36 155.6 164 49.4
Lsat_1_v5_gn_7_12941 Lactuca sativa HOM05D007559 ORTHO05D009642 1.6e-35 154.5 168 49.4
BcaB02g09190 Brassica carinata HOM05D007559 ORTHO05D009642 2.7e-35 153.7 172 45.9
C04p09160 Brassica napus HOM05D007559 ORTHO05D009642 2.7e-35 153.7 174 45.4
A05p07630 Brassica napus HOM05D007559 ORTHO05D009642 3.5e-35 153.3 172 45.3
BolC4t22525H Brassica oleracea HOM05D007559 ORTHO05D009642 5.9e-35 152.5 171 46.8
SGA_v2.0_scaffold85G26664 Striga asiatica HOM05D007559 ORTHO05D009642 3.8e-34 149.8 176 44.3
PSO384G3238 Papaver somniferum HOM05D007559 ORTHO05D009642 5.0e-34 149.4 181 47.0
Migut.J00080 Erythranthe guttata HOM05D007559 ORTHO05D009642 1.1e-33 148.3 177 40.7
BraA05t19732Z Brassica rapa HOM05D007559 ORTHO05D009642 1.5e-33 147.9 170 44.7
EL10Ac7g17033 Beta vulgaris HOM05D007559 ORTHO05D009642 1.9e-33 147.5 154 48.7
CAN.G481.10 Capsicum annuum HOM05D007559 ORTHO05D009642 3.3e-33 146.7 175 46.9
SHI27995 Sapria himalayana HOM05D007559 ORTHO05D009642 4.3e-33 146.4 176 42.0
PGSC0003DMG400026609 Solanum tuberosum HOM05D007559 ORTHO05D009642 1.6e-32 144.4 169 47.9
Solyc09g014930.1 Solanum lycopersicum HOM05D007559 ORTHO05D009642 2.1e-32 144.1 168 47.0
PSO339G0892 Papaver somniferum HOM05D007559 ORTHO05D009642 3.6e-32 143.3 181 44.8
Sopen09g007840 Solanum pennellii HOM05D007559 ORTHO05D009642 9.8e-30 135.2 160 46.9
MBI02_g41148_MAGBIO Magnolia biondii HOM05D007559 ORTHO05D009642 2.4e-28 130.6 146 46.6
MBI15_g13921_MAGBIO Magnolia biondii HOM05D007559 ORTHO05D009642 5.4e-28 129.4 146 47.3
Nitab4.5_0003592g0030 Nicotiana tabacum HOM05D007559 ORTHO05D009642 1.5e-25 121.3 143 45.5
CDE04G2050 Ceratophyllum demersum HOM05D007559 ORTHO05D009642 5.6e-25 119.4 122 48.4
Nitab4.5_0000047g0060 Nicotiana tabacum HOM05D007559 ORTHO05D009642 2.8e-24 117.1 143 45.5
Glyma.18G209700 Glycine max HOM05D007559 ORTHO05D009642 3.6e-24 116.7 120 51.7
Aa31LG5G23900 Aethionema arabicum HOM05D007559 ORTHO05D009642 3.4e-22 110.2 134 45.5
TAR623G0609 Trochodendron aralioides HOM05D007559 ORTHO05D009642 9.8e-22 108.6 119 52.1
MBI02_g32067_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 3.9e-18 96.7 92 51.1
Sabra01G0114900 Salix brachista HOM05D007559 ORTHO05D009642 2.5e-17 94.0 71 59.2
Sabra04G0101500 Salix brachista HOM05D007559 ORTHO05D009642 2.5e-17 94.0 74 58.1
MBI15_g43141_MAGBIO Magnolia biondii HOM05D007559 ORTHO05D009642 2.1e-16 90.9 86 51.2
Ca_07722_v3 Cicer arietinum L. HOM05D007559 ORTHO05D009642 2.0e-14 84.3 120 40.8
Ca_07728_v3 Cicer arietinum L. HOM05D007559 ORTHO05D009642 2.0e-14 84.3 120 40.8
ECA236G1374 Erigeron canadensis HOM05D007559 ORTHO05D009642 9.2e-12 75.5 111 36.0
Sed0001810 Sechium edule HOM05D002453 ORTHO05D002107 9.5e-09 65.5 163 27.0
Sed0019268 Sechium edule HOM05D002453 ORTHO05D002107 9.5e-09 65.5 163 27.0
RcHm_v2.0_Chr7g0181161 Rosa chinensis HOM05D002453 ORTHO05D002107 1.2e-08 65.1 165 27.9
Aqoxy3G03369 Aquilegia oxysepala HOM05D002453 ORTHO05D002107 1.6e-08 64.7 165 28.5
TAR371G0278 Trochodendron aralioides HOM05D002453 ORTHO05D002107 1.6e-08 64.7 165 29.1
Haze_07333 Corylus avellana HOM05D002453 ORTHO05D002107 2.1e-08 64.3 167 27.5
SHI14130 Sapria himalayana HOM05D002453 ORTHO05D002107 2.1e-08 64.3 170 24.7
ClCG04G012320 Citrullus lanatus HOM05D002453 ORTHO05D002107 3.6e-08 63.5 163 27.0
MSTRG.23026 Avicennia marina HOM05D002453 ORTHO05D002107 4.7e-08 63.2 167 26.3
Cfa018952 Carpinus fangiana HOM05D002453 ORTHO05D002107 8.1e-08 62.4 167 27.5
TWI81G0810 Tripterygium wilfordii HOM05D002453 ORTHO05D002107 8.1e-08 62.4 160 26.9
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 1.1e-07 62.0 164 26.8
ATR0829G167 Amborella trichopoda HOM05D007559 ORTHO05D009642 1.1e-07 62.0 80 46.2
Potri.010G234500 Populus trichocarpa HOM05D002453 ORTHO05D002107 1.4e-07 61.6 162 23.5
THA.LOC104813874 Tarenaya hassleriana HOM05D002453 ORTHO05D002107 1.4e-07 61.6 164 27.4
Migut.J01410 Erythranthe guttata HOM05D004271 ORTHO05D006011 3.1e-07 60.5 122 27.0
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 3.1e-07 60.5 164 26.8
Rhsim08G0155900 Rhododendron simsii HOM05D002453 ORTHO05D002107 3.1e-07 60.5 162 27.2
CAN.G1456.8 Capsicum annuum HOM05D002453 ORTHO05D002107 4.0e-07 60.1 178 25.8
QL10p016708 Quercus lobata HOM05D002453 ORTHO05D002107 4.0e-07 60.1 176 26.1
Ah.11g048530 Amaranthus hybridus HOM05D002453 ORTHO05D002107 5.2e-07 59.7 158 25.3
Cc04_g16730 Coffea canephora HOM05D002453 ORTHO05D002107 5.2e-07 59.7 165 26.7
DCAR_016546 Daucus carota HOM05D002453 ORTHO05D002107 5.2e-07 59.7 163 23.3
MBI02_g32066_MAGBIO Magnolia biondii HOM05D007559 ORTHO05D009642 5.2e-07 59.7 64 46.9
Medtr4g108650 Medicago truncatula HOM05D002453 ORTHO05D002107 5.2e-07 59.7 165 26.7
FAN08G1232 Fragaria x ananassa HOM05D002453 ORTHO05D002107 6.8e-07 59.3 180 26.1
FvH4_5g15040 Fragaria vesca HOM05D002453 ORTHO05D002107 8.9e-07 58.9 178 25.8
FAN18G2707 Fragaria x ananassa HOM05D002453 ORTHO05D002107 8.9e-07 58.9 178 25.8
PSO478G4167 Papaver somniferum HOM05D002453 ORTHO05D002107 8.9e-07 58.9 162 26.5
Rhsim04G0082900 Rhododendron simsii HOM05D000002 ORTHO05D000047 8.9e-07 58.9 80 35.0
RcHm_v2.0_Chr7g0215761 Rosa chinensis HOM05D006218 ORTHO05D007338 8.9e-07 58.9 173 25.4
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 1.2e-06 58.5 178 25.8
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 1.2e-06 58.5 178 25.8
MD16G1284000 Malus domestica HOM05D006218 ORTHO05D007338 1.2e-06 58.5 118 28.8
RcHm_v2.0_Chr6g0271871 Rosa chinensis HOM05D006218 ORTHO05D007338 1.2e-06 58.5 118 30.5
Ca_21825_v3 Cicer arietinum L. HOM05D002453 ORTHO05D002107 2.0e-06 57.8 178 27.0
Rhsim04G0048900 Rhododendron simsii HOM05D007559 ORTHO05D009642 2.0e-06 57.8 77 35.1
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 2.0e-06 57.8 163 25.2
Manes.14G077600 Manihot esculenta HOM05D002453 ORTHO05D002107 2.6e-06 57.4 164 25.6
QL11p014332 Quercus lobata HOM05D004271 ORTHO05D006011 2.6e-06 57.4 188 21.3
Sabra10G0181800 Salix brachista HOM05D002453 ORTHO05D002107 2.6e-06 57.4 162 25.9
CSS0000495 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 3.4e-06 57.0 165 26.7
CSS0042446 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 3.4e-06 57.0 165 26.7
Duzib052G0775 Durio zibethinus HOM05D004271 ORTHO05D006011 3.4e-06 57.0 120 25.8
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 3.4e-06 57.0 160 26.9
Aqoxy3G03751 Aquilegia oxysepala HOM05D008684 ORTHO05D010796 4.4e-06 56.6 118 29.7
CiPaw.08G075100 Carya illinoinensis HOM05D006218 ORTHO05D007338 4.4e-06 56.6 115 30.4
Dinv38703 Davidia involucrata HOM05D002453 ORTHO05D002107 4.4e-06 56.6 167 26.3
PGSC0003DMG400044445 Solanum tuberosum HOM05D007085 ORTHO05D008828 4.4e-06 56.6 117 28.2
PGSC0003DMG402021252 Solanum tuberosum HOM05D007085 ORTHO05D008828 4.4e-06 56.6 117 28.2
FvH4_5g24880 Fragaria vesca HOM05D006218 ORTHO05D007338 5.8e-06 56.2 115 31.3
Sopen12g014610 Solanum pennellii HOM05D002453 ORTHO05D002107 5.8e-06 56.2 123 30.9
Cc05_g10980 Coffea canephora HOM05D002453 ORTHO05D008746 7.6e-06 55.8 124 32.3
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 7.6e-06 55.8 167 25.1
MBI12_g14810_MAGBIO Magnolia biondii HOM05D004271 ORTHO05D006011 7.6e-06 55.8 119 24.4
Phvul.008G006600 Phaseolus vulgaris HOM05D008684 ORTHO05D010796 7.6e-06 55.8 120 30.0
CiPaw.11G043600 Carya illinoinensis HOM05D002453 ORTHO05D002107 9.9e-06 55.5 162 24.1
COL.COLO4_24521 Corchorus olitorius HOM05D002453 ORTHO05D002107 9.9e-06 55.5 164 23.2
Gohir.D01G220801 Gossypium hirsutum HOM05D007559 ORTHO05D009642 9.9e-06 55.5 45 57.8
Phvul.008G197400 Phaseolus vulgaris HOM05D002453 ORTHO05D002107 9.9e-06 55.5 165 24.8
Sp5g29730 Schrenkiella parvula HOM05D002453 ORTHO05D002107 9.9e-06 55.5 121 26.4


User provided reference genes

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