Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0461 Cannabis sativa HOM05D008721 ORTHO05D000137 2.4e-63 245.4 124 100.0
CANSAT78G2189 Cannabis sativa HOM05D000679 ORTHO05D000137 1.8e-58 229.2 124 93.5
CANSAT25G1307 Cannabis sativa HOM05D008721 ORTHO05D000137 5.8e-54 214.2 116 93.1
CANSAT78G0758 Cannabis sativa HOM05D008721 ORTHO05D000137 1.3e-53 213.0 124 86.3
CANSAT54G1268 Cannabis sativa HOM05D008897 ORTHO05D000137 1.1e-52 209.9 124 84.7
CANSAT35G1468 Cannabis sativa HOM05D008897 ORTHO05D000137 5.0e-45 184.5 104 84.6
CANSAT11G1859 Cannabis sativa HOM05D008721 ORTHO05D000137 1.1e-20 103.6 108 49.1
CANSAT21G0642 Cannabis sativa HOM05D008721 ORTHO05D000137 1.9e-20 102.8 108 49.1
CANSAT35G0046 Cannabis sativa HOM05D000679 ORTHO05D000137 1.9e-20 102.8 108 49.1
ATR0441G001 Amborella trichopoda HOM05D008721 ORTHO05D000137 2.5e-20 102.4 108 49.1
CANSAT80G1051 Cannabis sativa HOM05D008721 ORTHO05D000137 3.2e-20 102.1 108 48.1
CANSAT25G0487 Cannabis sativa HOM05D008721 ORTHO05D000137 5.5e-20 101.3 115 46.1
CANSAT25G3227 Cannabis sativa HOM05D008721 ORTHO05D000137 9.4e-20 100.5 108 48.1
CANSAT21G2500 Cannabis sativa HOM05D008721 ORTHO05D000137 2.1e-19 99.4 108 48.1
CANSAT54G1761 Cannabis sativa HOM05D008721 ORTHO05D000137 2.7e-19 99.0 104 48.1
CANSAT78G1843 Cannabis sativa HOM05D008721 ORTHO05D000137 3.0e-18 95.5 108 46.3
CANSAT25G0186 Cannabis sativa HOM05D008636 ORTHO05D000137 1.2e-17 93.6 116 44.8
CANSAT01G0053 Cannabis sativa HOM05D008636 ORTHO05D000137 1.5e-17 93.2 116 44.8
CANSAT25G1221 Cannabis sativa HOM05D008636 ORTHO05D000137 1.5e-17 93.2 116 44.0
CANSAT01G0402 Cannabis sativa HOM05D008636 ORTHO05D000137 2.6e-17 92.4 116 44.0
CANSAT25G3447 Cannabis sativa HOM05D008636 ORTHO05D000137 2.6e-17 92.4 116 44.0
CANSAT35G1851 Cannabis sativa HOM05D008636 ORTHO05D000137 2.6e-17 92.4 116 44.0
CANSAT56G1525 Cannabis sativa HOM05D008636 ORTHO05D000137 2.6e-17 92.4 116 44.0
SGA_v2.0_scaffold11G05593 Striga asiatica HOM05D002262 ORTHO05D000482 4.8e-16 88.2 107 39.3
CANSAT21G0858 Cannabis sativa HOM05D008721 ORTHO05D000137 5.4e-15 84.7 108 42.6
CANSAT35G0235 Cannabis sativa HOM05D008636 ORTHO05D000137 2.0e-14 82.8 116 41.4
CANSAT21G0896 Cannabis sativa HOM05D008636 ORTHO05D000137 2.7e-14 82.4 116 41.4
CANSAT35G0233 Cannabis sativa HOM05D008636 ORTHO05D000137 1.7e-13 79.7 116 39.7
Nitab4.5_0001614g0170 Nicotiana tabacum HOM05D002262 ORTHO05D000137 6.5e-13 77.8 128 37.5
Nitab4.5_0003261g0040 Nicotiana tabacum HOM05D000679 ORTHO05D000137 1.5e-12 76.6 131 33.6
CANSAT56G3453 Cannabis sativa HOM05D008636 ORTHO05D000137 1.9e-12 76.3 73 50.7
Nitab4.5_0018223g0020 Nicotiana tabacum HOM05D002262 ORTHO05D000137 9.4e-12 73.9 129 36.4
Nitab4.5_0002329g0050 Nicotiana tabacum HOM05D000679 ORTHO05D000137 1.6e-11 73.2 118 34.7
ATR0365G002 Amborella trichopoda HOM05D008636 ORTHO05D000137 3.6e-11 72.0 116 38.8
CANSAT11G0393 Cannabis sativa HOM05D008721 ORTHO05D000137 3.6e-11 72.0 55 58.2
Nitab4.5_0001725g0060 Nicotiana tabacum HOM05D006812 ORTHO05D000137 3.6e-11 72.0 123 34.1
Nitab4.5_0003392g0030 Nicotiana tabacum HOM05D008108 ORTHO05D000137 3.6e-11 72.0 98 35.7
SGA_v2.0_scaffold1G00046 Striga asiatica HOM05D000679 ORTHO05D000137 3.6e-11 72.0 104 39.4
Nitab4.5_0000022g0120 Nicotiana tabacum HOM05D000679 ORTHO05D000137 4.7e-11 71.6 122 32.8
Nitab4.5_0028280g0010 Nicotiana tabacum HOM05D008108 ORTHO05D000137 4.7e-11 71.6 133 31.6
CANSAT80G0664 Cannabis sativa HOM05D008897 ORTHO05D000137 6.1e-11 71.2 36 94.4
Nitab4.5_0000902g0220 Nicotiana tabacum HOM05D002262 ORTHO05D000137 8.0e-11 70.9 123 37.4
CANSAT78G2148 Cannabis sativa HOM05D008897 ORTHO05D000137 1.0e-10 70.5 42 83.3
Nitab4.5_0000864g0170 Nicotiana tabacum HOM05D002262 ORTHO05D000137 1.0e-10 70.5 97 38.1
Nitab4.5_0002432g0010 Nicotiana tabacum HOM05D002262 ORTHO05D000137 1.0e-10 70.5 127 35.4
Nitab4.5_0000832g0150 Nicotiana tabacum HOM05D002262 ORTHO05D000137 1.4e-10 70.1 121 36.4
CAN.G197.8 Capsicum annuum HOM05D000644 ORTHO05D000137 2.3e-10 69.3 118 33.1
Peaxi162Scf00237g00177 Petunia axillaris HOM05D000679 ORTHO05D000137 3.0e-10 68.9 121 34.7
CAN.G242.13 Capsicum annuum HOM05D009195 ORTHO05D000137 4.0e-10 68.6 119 32.8
SGA_v2.0_scaffold2471G54126 Striga asiatica HOM05D000679 ORTHO05D000137 4.0e-10 68.6 114 31.6
CAN.G1071.1 Capsicum annuum HOM05D009195 ORTHO05D000137 5.2e-10 68.2 118 30.5
Peaxi162Scf00034g02725 Petunia axillaris HOM05D010453 ORTHO05D012004 6.8e-10 67.8 89 43.8
CANSAT80G2560 Cannabis sativa HOM05D008897 ORTHO05D000137 8.8e-10 67.4 56 66.1
Nitab4.5_0000553g0010 Nicotiana tabacum HOM05D008108 ORTHO05D000137 1.2e-09 67.0 115 30.4
Nitab4.5_0001684g0060 Nicotiana tabacum HOM05D005877 ORTHO05D010356 1.2e-09 67.0 104 38.5
Nitab4.5_0004940g0100 Nicotiana tabacum HOM05D002262 ORTHO05D000137 1.2e-09 67.0 129 34.9
Nitab4.5_0005382g0060 Nicotiana tabacum HOM05D002262 ORTHO05D000482 1.2e-09 67.0 129 34.9
CANSAT64G1018 Cannabis sativa HOM05D008721 ORTHO05D000137 1.5e-09 66.6 52 53.8
Nitab4.5_0001707g0040 Nicotiana tabacum HOM05D002262 ORTHO05D000137 1.5e-09 66.6 123 35.0
CANSAT25G1234 Cannabis sativa HOM05D023333 ORTHO05D000137 2.0e-09 66.2 123 35.0
CANSAT56G1233 Cannabis sativa HOM05D008636 ORTHO05D000137 2.6e-09 65.9 60 53.3
Sopen01g014180 Solanum pennellii HOM05D000679 ORTHO05D000137 2.6e-09 65.9 112 33.0
Nitab4.5_0014346g0010 Nicotiana tabacum HOM05D002262 ORTHO05D000482 4.4e-09 65.1 131 34.4
Peaxi162Scf00048g01514 Petunia axillaris HOM05D010453 ORTHO05D012004 4.4e-09 65.1 74 44.6
Peaxi162Scf00218g00812 Petunia axillaris HOM05D010453 ORTHO05D000137 4.4e-09 65.1 74 44.6
CANSAT78G2225 Cannabis sativa HOM05D009472 ORTHO05D000137 5.7e-09 64.7 123 35.0
SGA_v2.0_scaffold23G10125 Striga asiatica HOM05D000679 ORTHO05D000137 5.7e-09 64.7 112 30.4
CAN.G50.5 Capsicum annuum HOM05D009195 ORTHO05D000137 9.8e-09 63.9 122 30.3
Nitab4.5_0000514g0180 Nicotiana tabacum HOM05D006812 ORTHO05D012242 9.8e-09 63.9 89 36.0
Nitab4.5_0001724g0030 Nicotiana tabacum HOM05D008108 ORTHO05D000137 9.8e-09 63.9 59 49.2
Nitab4.5_0003770g0060 Nicotiana tabacum HOM05D002262 ORTHO05D000137 9.8e-09 63.9 67 44.8
CANSAT25G1319 Cannabis sativa HOM05D000679 ORTHO05D000137 1.3e-08 63.5 124 36.3
CAN.G58.24 Capsicum annuum HOM05D009195 ORTHO05D000137 1.7e-08 63.2 72 40.3
Sopen09g012720 Solanum pennellii HOM05D000679 ORTHO05D014686 1.7e-08 63.2 121 33.9
PGSC0003DMG400009651 Solanum tuberosum HOM05D002262 ORTHO05D000482 1.7e-08 63.2 126 31.7
CAN.G998.1 Capsicum annuum HOM05D009195 ORTHO05D000137 2.2e-08 62.8 79 38.0
Nitab4.5_0000263g0010 Nicotiana tabacum HOM05D002262 ORTHO05D000137 2.8e-08 62.4 88 37.5
Peaxi162Scf00130g00004 Petunia axillaris HOM05D010453 ORTHO05D012004 2.8e-08 62.4 62 46.8
Peaxi162Scf00535g00027 Petunia axillaris HOM05D010453 ORTHO05D012004 2.8e-08 62.4 62 46.8
Peaxi162Scf01691g00007 Petunia axillaris HOM05D010453 ORTHO05D012004 2.8e-08 62.4 55 52.7
CANSAT80G2652 Cannabis sativa HOM05D023333 ORTHO05D000137 3.7e-08 62.0 122 37.7
CAN.G977.6 Capsicum annuum HOM05D009195 ORTHO05D000137 3.7e-08 62.0 69 39.1
Peaxi162Scf00341g00032 Petunia axillaris HOM05D010453 ORTHO05D012004 3.7e-08 62.0 63 42.9
Nitab4.5_0016899g0020 Nicotiana tabacum HOM05D002262 ORTHO05D000137 4.9e-08 61.6 129 32.6
Solyc10g076970.1 Solanum lycopersicum HOM05D000679 ORTHO05D000137 4.9e-08 61.6 118 34.7
Peaxi162Scf00852g00024 Petunia axillaris HOM05D010453 ORTHO05D012004 6.3e-08 61.2 110 36.4
Sopen06g011260 Solanum pennellii HOM05D000679 ORTHO05D000137 6.3e-08 61.2 116 34.5
Nitab4.5_0008937g0010 Nicotiana tabacum HOM05D002262 ORTHO05D000482 8.3e-08 60.8 96 39.6
CANSAT78G2078 Cannabis sativa HOM05D008636 ORTHO05D000482 1.1e-07 60.5 98 36.7
Nitab4.5_0006099g0050 Nicotiana tabacum HOM05D000679 ORTHO05D000137 1.1e-07 60.5 109 34.9
Nitab4.5_0006617g0040 Nicotiana tabacum HOM05D005063 ORTHO05D000137 1.1e-07 60.5 99 34.3
Peaxi162Scf01147g00017 Petunia axillaris HOM05D010453 ORTHO05D000137 1.1e-07 60.5 72 38.9
SGA_v2.0_scaffold160G37744 Striga asiatica HOM05D002262 ORTHO05D000137 1.1e-07 60.5 102 29.4
CANSAT11G1718 Cannabis sativa HOM05D009472 ORTHO05D000137 1.4e-07 60.1 123 29.3
Peaxi162Scf00097g00213 Petunia axillaris HOM05D010453 ORTHO05D012004 1.4e-07 60.1 62 43.5
Nitab4.5_0000727g0060 Nicotiana tabacum HOM05D008108 ORTHO05D000137 1.8e-07 59.7 73 45.2
Sopen03g006990 Solanum pennellii HOM05D000679 ORTHO05D000137 1.8e-07 59.7 118 33.9
Sopen04g026570 Solanum pennellii HOM05D000679 ORTHO05D000137 1.8e-07 59.7 107 33.6
Nitab4.5_0001504g0160 Nicotiana tabacum HOM05D000679 ORTHO05D000137 2.4e-07 59.3 110 33.6
Sopen10g028350 Solanum pennellii HOM05D000679 ORTHO05D000137 2.4e-07 59.3 119 29.4
CAN.G1568.2 Capsicum annuum HOM05D009195 ORTHO05D000137 3.1e-07 58.9 51 47.1
Nitab4.5_0014640g0020 Nicotiana tabacum HOM05D005877 ORTHO05D010356 3.1e-07 58.9 76 43.4
Solyc01g066915.1 Solanum lycopersicum HOM05D000679 ORTHO05D000137 3.1e-07 58.9 114 33.3
CAN.G1239.12 Capsicum annuum HOM05D000679 ORTHO05D000137 4.1e-07 58.5 134 26.9
Solyc08g044337.1 Solanum lycopersicum HOM05D000679 ORTHO05D000137 4.1e-07 58.5 118 33.9
CANSAT25G0378 Cannabis sativa HOM05D000679 ORTHO05D000137 5.4e-07 58.2 109 30.3
Peaxi162Scf00159g00113 Petunia axillaris HOM05D010453 ORTHO05D012004 5.4e-07 58.2 56 50.0
Sopen00g010790 Solanum pennellii HOM05D000679 ORTHO05D000137 5.4e-07 58.2 115 33.9
PGSC0003DMG400000873 Solanum tuberosum HOM05D000679 ORTHO05D000137 5.4e-07 58.2 116 29.3
Nitab4.5_0002414g0070 Nicotiana tabacum HOM05D002262 ORTHO05D000137 7.0e-07 57.8 122 33.6
CAN.G326.5 Capsicum annuum HOM05D009195 ORTHO05D016873 9.2e-07 57.4 80 36.2
Solyc05g150115.1 Solanum lycopersicum HOM05D000679 ORTHO05D000137 9.2e-07 57.4 74 41.9
Nitab4.5_0001057g0220 Nicotiana tabacum HOM05D002262 ORTHO05D000137 1.2e-06 57.0 121 33.9
Nitab4.5_0011140g0020 Nicotiana tabacum HOM05D000679 ORTHO05D000137 1.2e-06 57.0 90 32.2
Sopen01g026480 Solanum pennellii HOM05D000679 ORTHO05D000137 1.2e-06 57.0 119 27.7
PGSC0003DMG400042800 Solanum tuberosum HOM05D000679 ORTHO05D000137 1.2e-06 57.0 116 25.9
Nitab4.5_0000665g0010 Nicotiana tabacum HOM05D002262 ORTHO05D000137 1.6e-06 56.6 83 36.1
Sopen05g022570 Solanum pennellii HOM05D000679 ORTHO05D000137 1.6e-06 56.6 119 28.6
CANSAT54G2098 Cannabis sativa HOM05D000679 ORTHO05D000137 2.0e-06 56.2 117 28.2
CAN.G1361.12 Capsicum annuum HOM05D000541 ORTHO05D000137 2.0e-06 56.2 110 30.9
CAN.G1469.2 Capsicum annuum HOM05D002262 ORTHO05D000137 2.0e-06 56.2 79 36.7
Nitab4.5_0000383g0370 Nicotiana tabacum HOM05D000679 ORTHO05D000137 2.0e-06 56.2 109 33.0
Nitab4.5_0001843g0200 Nicotiana tabacum HOM05D002262 ORTHO05D000137 2.0e-06 56.2 92 35.9
Nitab4.5_0002311g0170 Nicotiana tabacum HOM05D002262 ORTHO05D000137 2.0e-06 56.2 123 32.5
Nitab4.5_0003465g0040 Nicotiana tabacum HOM05D006812 ORTHO05D012242 2.0e-06 56.2 86 31.4
Nitab4.5_0004979g0150 Nicotiana tabacum HOM05D000679 ORTHO05D000137 2.0e-06 56.2 109 32.1
Solyc03g034203.1 Solanum lycopersicum HOM05D000679 ORTHO05D000137 2.0e-06 56.2 62 41.9
PGSC0003DMG400040109 Solanum tuberosum HOM05D000679 ORTHO05D000137 2.0e-06 56.2 65 41.5
CANSAT25G3489 Cannabis sativa HOM05D008636 ORTHO05D000137 2.7e-06 55.8 52 51.9
CANSAT35G1242 Cannabis sativa HOM05D000679 ORTHO05D000137 2.7e-06 55.8 109 27.5
Nitab4.5_0001230g0050 Nicotiana tabacum HOM05D006812 ORTHO05D000482 2.7e-06 55.8 69 39.1
Oeu043719.1 Olea europaea HOM05D011057 ORTHO05D013047 3.5e-06 55.5 116 28.4
Peaxi162Scf00215g00052 Petunia axillaris HOM05D010453 ORTHO05D012004 3.5e-06 55.5 54 48.1
Solyc08g016583.1 Solanum lycopersicum HOM05D000679 ORTHO05D000137 3.5e-06 55.5 74 40.5
Solyc09g020160.1 Solanum lycopersicum HOM05D000679 ORTHO05D000137 3.5e-06 55.5 115 32.2
Nitab4.5_0000210g0020 Nicotiana tabacum HOM05D000679 ORTHO05D000137 4.5e-06 55.1 109 33.0
Nitab4.5_0000379g0040 Nicotiana tabacum HOM05D000679 ORTHO05D000137 4.5e-06 55.1 110 32.7
Solyc07g008677.1 Solanum lycopersicum HOM05D000679 ORTHO05D000137 4.5e-06 55.1 118 32.2
SGA_v2.0_scaffold437G51617 Striga asiatica HOM05D000679 ORTHO05D000137 4.5e-06 55.1 125 24.8
CANSAT01G3183 Cannabis sativa HOM05D000679 ORTHO05D000137 5.9e-06 54.7 99 32.3
CAN.G1344.11 Capsicum annuum HOM05D000679 ORTHO05D000482 5.9e-06 54.7 83 32.5
Nitab4.5_0008561g0020 Nicotiana tabacum HOM05D002262 ORTHO05D000137 5.9e-06 54.7 74 39.2
Solyc08g074525.1 Solanum lycopersicum HOM05D000679 ORTHO05D000137 5.9e-06 54.7 121 31.4
Sopen07g008740 Solanum pennellii HOM05D007732 ORTHO05D010105 5.9e-06 54.7 129 25.6
Sopen10g014500 Solanum pennellii HOM05D000541 ORTHO05D010105 5.9e-06 54.7 145 24.8
CAN.G897.8 Capsicum annuum HOM05D009195 ORTHO05D000137 7.7e-06 54.3 86 32.6
Nitab4.5_0002052g0050 Nicotiana tabacum HOM05D002262 ORTHO05D000137 7.7e-06 54.3 92 37.0
Nitab4.5_0003934g0040 Nicotiana tabacum HOM05D002262 ORTHO05D000137 7.7e-06 54.3 86 34.9
Nitab4.5_0005135g0050 Nicotiana tabacum HOM05D006812 ORTHO05D000482 7.7e-06 54.3 74 36.5
Nitab4.5_0008288g0020 Nicotiana tabacum HOM05D000679 ORTHO05D000137 7.7e-06 54.3 112 32.1
PGSC0003DMG400023258 Solanum tuberosum HOM05D000541 ORTHO05D000137 7.7e-06 54.3 125 28.8


User provided reference genes

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