Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0413 Cannabis sativa HOM05D006409 ORTHO05D008250 3.0e-178 628.6 377 100.0
CANSAT80G1113 Cannabis sativa HOM05D006409 ORTHO05D008250 8.0e-147 524.2 357 84.0
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 1.3e-88 330.9 355 62.3
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 1.1e-87 327.8 348 62.6
Prupe.5G201100 Prunus persica HOM05D006409 ORTHO05D008250 2.3e-85 320.1 358 58.9
QL10p018676 Quercus lobata HOM05D006409 ORTHO05D008250 1.5e-84 317.4 358 58.1
Cfa019299 Carpinus fangiana HOM05D006409 ORTHO05D008250 9.7e-84 314.7 357 62.5
CiPaw.11G050000 Carya illinoinensis HOM05D006409 ORTHO05D008250 2.2e-83 313.5 358 58.1
MD14G1208800 Malus domestica HOM05D006409 ORTHO05D008250 3.7e-83 312.8 355 53.2
FvH4_5g14277 Fragaria vesca HOM05D006409 ORTHO05D008250 1.1e-82 311.2 334 62.0
TAR629G2567 Trochodendron aralioides HOM05D006409 ORTHO05D008250 1.1e-82 311.2 362 52.5
Ciclev10020474m.g Citrus clementina HOM05D006409 ORTHO05D008250 1.2e-81 307.8 349 51.9
Potri.015G048900 Populus trichocarpa HOM05D006409 ORTHO05D008250 6.5e-80 302.0 356 56.5
Duzib084G0027 Durio zibethinus HOM05D006409 ORTHO05D008250 1.1e-79 301.2 350 56.9
Manes.14G084000 Manihot esculenta HOM05D006409 ORTHO05D008250 1.8e-77 293.9 350 55.4
Dinv38786 Davidia involucrata HOM05D006409 ORTHO05D008250 3.0e-77 293.1 362 55.5
Sabra15G0078400 Salix brachista HOM05D006409 ORTHO05D008250 5.1e-77 292.4 349 52.1
Thecc.03G097200 Theobroma cacao HOM05D006409 ORTHO05D008250 1.1e-76 291.2 349 52.7
TWI81G1094 Tripterygium wilfordii HOM05D006409 ORTHO05D008250 9.7e-76 288.1 349 56.2
Eucgr.B00571 Eucalyptus grandis HOM05D006409 ORTHO05D008250 1.5e-73 280.8 354 56.5
Nitab4.5_0001961g0070 Nicotiana tabacum HOM05D006409 ORTHO05D008250 2.0e-73 280.4 360 46.7
RcHm_v2.0_Chr7g0182601 Rosa chinensis HOM05D006409 ORTHO05D008250 2.0e-73 280.4 357 55.5
Rhsim08G0148500 Rhododendron simsii HOM05D006409 ORTHO05D008250 7.7e-73 278.5 349 54.2
Oeu014392.1 Olea europaea HOM05D006409 ORTHO05D006262 1.7e-72 277.3 370 46.5
PGR083G0341 Punica granatum HOM05D006409 ORTHO05D008250 1.6e-70 270.8 354 48.9
Gorai.008G196800 Gossypium raimondii HOM05D006409 ORTHO05D008250 3.6e-70 269.6 350 58.0
Gohir.D12G183500 Gossypium hirsutum HOM05D006409 ORTHO05D008250 1.0e-69 268.1 350 57.7
Haze_07680 Corylus avellana HOM05D006409 ORTHO05D008250 3.0e-69 266.5 310 57.1
GSVIVG01007923001 Vitis vinifera HOM05D006409 ORTHO05D008250 3.0e-69 266.5 362 52.2
Cc00_g02320 Coffea canephora HOM05D006409 ORTHO05D008250 5.2e-69 265.8 373 51.7
Lj4g0024886 Lotus japonicus HOM05D006409 ORTHO05D008250 8.8e-69 265.0 350 48.9
FAN08G0388 Fragaria x ananassa HOM05D006409 ORTHO05D008250 2.6e-68 263.5 355 53.8
Sopen12g016610 Solanum pennellii HOM05D006409 ORTHO05D008250 3.3e-68 263.1 370 45.1
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 9.7e-68 261.5 349 48.7
Nitab4.5_0005160g0050 Nicotiana tabacum HOM05D006409 ORTHO05D008250 1.8e-66 257.3 376 43.1
PGSC0003DMG400012806 Solanum tuberosum HOM05D006409 ORTHO05D008250 7.0e-66 255.4 385 42.9
Cpa.g.sc94.9 Carica papaya HOM05D006409 ORTHO05D008250 1.2e-65 254.6 338 47.9
Glyma.05G022800 Glycine max HOM05D006409 ORTHO05D008250 4.5e-65 252.7 350 50.6
MELO3C002015.2 Cucumis melo HOM05D006409 ORTHO05D008250 1.1e-63 248.1 349 52.1
Glyma.17G076800 Glycine max HOM05D006409 ORTHO05D008250 1.1e-63 248.1 350 48.9
Solyc12g036300.3 Solanum lycopersicum HOM05D006409 ORTHO05D008250 2.5e-63 246.9 370 43.2
Peaxi162Scf00106g00081 Petunia axillaris HOM05D006409 ORTHO05D008250 5.5e-63 245.7 371 46.6
AL6G18220 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 9.4e-63 245.0 350 47.4
Atru.chr9.377 Acer truncatum HOM05D006409 ORTHO05D008250 1.6e-62 244.2 303 55.4
MSTRG.22971 Avicennia marina HOM05D006409 ORTHO05D008250 4.7e-62 242.7 355 44.8
CsaV3_1G005860 Cucumis sativus L. HOM05D006409 ORTHO05D008250 1.4e-61 241.1 349 51.3
Gohir.A12G180800 Gossypium hirsutum HOM05D006409 ORTHO05D008250 5.2e-61 239.2 350 53.7
BcaNung06903 Brassica carinata HOM05D006409 ORTHO05D008250 1.2e-60 238.0 351 48.4
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 7.5e-60 235.3 350 47.1
Carub.0006s0678 Capsella rubella HOM05D006409 ORTHO05D008250 1.7e-59 234.2 350 49.4
Actinidia09250 Actinidia chinensis HOM05D006409 ORTHO05D008250 2.2e-59 233.8 343 44.3
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 2.2e-59 233.8 348 43.1
ClCG04G011930 Citrullus lanatus HOM05D006409 ORTHO05D008250 2.8e-59 233.4 346 54.9
Medtr4g109330 Medicago truncatula HOM05D006409 ORTHO05D008250 4.8e-59 232.6 328 49.1
CARHR205310 Cardamine hirsuta HOM05D006409 ORTHO05D008250 6.3e-59 232.3 350 42.9
AT5G07890 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 8.2e-59 231.9 350 43.4
Sp6g35060 Schrenkiella parvula HOM05D006409 ORTHO05D008250 1.4e-58 231.1 351 43.0
vmacro17591 Vaccinium macrocarpon HOM05D006409 ORTHO05D008250 1.4e-58 231.1 396 41.4
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 2.4e-58 230.3 351 45.9
THA.LOC104818336 Tarenaya hassleriana HOM05D006409 ORTHO05D008250 5.3e-58 229.2 351 49.0
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 7.0e-58 228.8 353 44.8
Carub.0008s2186 Capsella rubella HOM05D006409 ORTHO05D008250 7.0e-58 228.8 350 42.9
COL.COLO4_22753 Corchorus olitorius HOM05D006409 ORTHO05D008250 7.0e-58 228.8 350 50.3
AL8G37860 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 9.1e-58 228.4 357 47.1
PSO302G0195 Papaver somniferum HOM05D006409 ORTHO05D008250 9.1e-58 228.4 349 43.0
arahy.Tifrunner.gnm1.ann1.PS4SMH Arachis hypogaea HOM05D006409 ORTHO05D008250 2.7e-57 226.9 349 42.7
PSO478G4763 Papaver somniferum HOM05D006409 ORTHO05D008250 3.5e-57 226.5 349 46.1
CAN.G172.10 Capsicum annuum HOM05D006409 ORTHO05D008250 7.7e-57 225.3 348 41.7
Lj5A105T60 Lonicera japonica HOM05D006409 ORTHO05D008250 7.7e-57 225.3 299 48.2
PSO017G5610 Papaver somniferum HOM05D006409 ORTHO05D008250 1.0e-56 224.9 349 45.6
Thhalv10013673m.g Eutrema salsugineum HOM05D006409 ORTHO05D008250 2.2e-56 223.8 350 46.9
BolC9t59643H Brassica oleracea HOM05D006409 ORTHO05D008250 5.0e-56 222.6 348 42.5
Lalb_Chr13g0302951 Lupinus albus HOM05D006409 ORTHO05D008250 6.5e-56 222.2 352 45.5
TPR.G2042 Trifolium pratense HOM05D006409 ORTHO05D008250 6.5e-56 222.2 353 49.3
Psat4g048440 Pisum sativum HOM05D006409 ORTHO05D008250 8.5e-56 221.9 321 48.0
VMungo1215G3198 Vigna mungo HOM05D006409 ORTHO05D008250 5.5e-55 219.2 351 43.6
Phvul.L001604 Phaseolus vulgaris HOM05D006409 ORTHO05D008250 9.4e-55 218.4 344 43.9
A03p03510 Brassica napus HOM05D006409 ORTHO05D008250 1.6e-54 217.6 358 45.0
BraA03t09701Z Brassica rapa HOM05D006409 ORTHO05D008250 1.6e-54 217.6 358 45.0
C03p03950 Brassica napus HOM05D006409 ORTHO05D008250 2.1e-54 217.2 351 41.3
BolC3t12932H Brassica oleracea HOM05D006409 ORTHO05D008250 2.1e-54 217.2 351 41.3
DCAR_026015 Daucus carota HOM05D006409 ORTHO05D008250 2.7e-54 216.9 352 42.0
arahy.Tifrunner.gnm1.ann1.4D2E4C Arachis hypogaea HOM05D006409 ORTHO05D008250 4.7e-54 216.1 349 41.8
Nn4g23374 Nelumbo nucifera HOM05D006409 ORTHO05D008250 1.0e-53 214.9 371 40.4
BcaB01g05645 Brassica carinata HOM05D006409 ORTHO05D008250 3.0e-53 213.4 350 41.1
AUR62021594 Chenopodium quinoa HOM05D006409 ORTHO05D008250 7.5e-52 208.8 351 47.0
Actinidia04843 Actinidia chinensis HOM05D006409 ORTHO05D008250 1.3e-51 208.0 243 52.7
Sed0008489 Sechium edule HOM05D006409 ORTHO05D008250 3.7e-51 206.5 345 52.5
ATR0064G033 Amborella trichopoda HOM05D006409 ORTHO05D008250 2.4e-50 203.8 371 40.4
AT5G61200 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 9.1e-50 201.8 349 46.4
HanXRQChr09g0270151 Helianthus annuus HOM05D006409 ORTHO05D008250 1.7e-48 197.6 359 41.5
Ca_21789_v3 Cicer arietinum L. HOM05D006409 ORTHO05D008250 3.2e-47 193.4 279 47.3
ECA232G2526 Erigeron canadensis HOM05D006409 ORTHO05D008250 9.5e-47 191.8 359 45.4
AUR62008498 Chenopodium quinoa HOM05D006409 ORTHO05D008250 1.7e-43 181.0 343 44.0
SalBow5G3762 Salvia bowleyana HOM05D006409 ORTHO05D008250 7.0e-42 175.6 348 38.5
Sc04g0003080 Simmondsia chinensis HOM05D006409 ORTHO05D008250 1.2e-38 164.9 354 42.1
BcaC02g08700 Brassica carinata HOM05D006409 ORTHO05D008250 1.5e-36 157.9 283 40.3
CDE06G0998 Ceratophyllum demersum HOM05D006409 ORTHO05D008250 1.3e-35 154.8 347 34.6
Hund02605 Selenicereus undatus HOM05D006409 ORTHO05D008250 2.2e-35 154.1 341 40.2
Zm00001eb108440 Zea mays HOM05D006409 ORTHO05D008250 3.7e-35 153.3 321 36.4
Migut.I00315 Erythranthe guttata HOM05D006409 ORTHO05D008250 4.9e-35 152.9 356 34.0
C04p51620 Brassica napus HOM05D006409 ORTHO05D008250 6.4e-35 152.5 278 40.6
Os07g0598700 Oryza sativa ssp. japonica HOM05D006409 ORTHO05D008250 6.4e-35 152.5 348 34.2
HanXRQChr16g0502261 Helianthus annuus HOM05D006409 ORTHO05D008250 8.3e-35 152.1 355 41.4
BcaC02g08698 Brassica carinata HOM05D006409 ORTHO05D008250 7.3e-31 139.0 264 40.9
Ah.02g113920 Amaranthus hybridus HOM05D006409 ORTHO05D008250 1.2e-28 131.7 335 33.7
BcaC02g08699 Brassica carinata HOM05D006409 ORTHO05D008250 1.9e-26 124.4 210 40.5
EL10Ac5g11100 Beta vulgaris HOM05D006409 ORTHO05D008250 1.9e-23 114.4 349 34.4
SEGI_28191 Sequoiadendron giganteum HOM05D006409 ORTHO05D008250 2.3e-21 107.5 357 32.2
SEGI_37085 Sequoiadendron giganteum HOM05D006409 ORTHO05D008250 2.3e-21 107.5 357 32.2
Duzib068G0538 Durio zibethinus HOM05D006409 ORTHO05D008250 2.0e-20 104.4 178 42.7
Lsat_1_v5_gn_4_110201 Lactuca sativa HOM05D006409 ORTHO05D008250 2.8e-14 84.0 316 28.8
C04p51590 Brassica napus HOM05D006409 ORTHO05D008250 1.2e-12 78.6 80 55.0
SGA_v2.0_scaffold25G10967 Striga asiatica HOM05D006409 ORTHO05D008250 1.9e-07 61.2 178 30.9
arahy.Tifrunner.gnm1.ann1.LPT8KM Arachis hypogaea HOM05D006409 ORTHO05D008250 3.3e-07 60.5 73 47.9
Actinidia12838 Actinidia chinensis HOM05D006409 ORTHO05D008250 7.3e-07 59.3 73 47.9
C04p51610 Brassica napus HOM05D006409 ORTHO05D008250 8.1e-06 55.8 138 29.7


User provided reference genes

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