Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0412 Cannabis sativa HOM05D007273 ORTHO05D009230 9.8e-141 503.4 252 100.0
CANSAT80G2704 Cannabis sativa HOM05D007273 ORTHO05D009230 7.0e-139 497.3 252 98.4
Haze_19853 Corylus avellana HOM05D007273 ORTHO05D009230 4.6e-90 335.1 233 73.0
CiPaw.09G038500 Carya illinoinensis HOM05D007273 ORTHO05D009230 1.3e-89 333.6 236 72.5
Cfa016813 Carpinus fangiana HOM05D007273 ORTHO05D009230 8.7e-89 330.9 238 71.0
Prupe.7G059600 Prunus persica HOM05D007273 ORTHO05D009230 9.6e-88 327.4 249 68.3
Medtr7g091490 Medicago truncatula HOM05D007273 ORTHO05D009230 6.2e-87 324.7 239 71.5
RcHm_v2.0_Chr3g0482541 Rosa chinensis HOM05D007273 ORTHO05D009230 1.8e-86 323.2 247 69.2
Lj1g0021019 Lotus japonicus HOM05D007273 ORTHO05D009230 1.2e-85 320.5 240 67.5
Psat3g072760 Pisum sativum HOM05D007273 ORTHO05D009230 5.8e-85 318.2 237 68.8
Ca_08456_v3 Cicer arietinum L. HOM05D007273 ORTHO05D009230 1.6e-82 310.1 231 68.8
FAN05G2271 Fragaria x ananassa HOM05D007273 ORTHO05D009230 5.1e-81 305.1 227 68.7
FvH4_6g23860 Fragaria vesca HOM05D007273 ORTHO05D009230 1.6e-79 300.1 227 67.8
Phvul.001G131900 Phaseolus vulgaris HOM05D007273 ORTHO05D009230 6.3e-79 298.1 231 65.4
arahy.Tifrunner.gnm1.ann1.J7IQUN Arachis hypogaea HOM05D007273 ORTHO05D009230 8.2e-79 297.7 240 64.2
Glyma.03G136600 Glycine max HOM05D007273 ORTHO05D009230 2.4e-78 296.2 228 67.5
VMungo1383G0084 Vigna mungo HOM05D007273 ORTHO05D009230 3.1e-78 295.8 231 65.4
QL07p000584 Quercus lobata HOM05D007273 ORTHO05D009230 1.3e-76 290.4 260 63.1
ClCG04G000150 Citrullus lanatus HOM05D007273 ORTHO05D009230 3.8e-76 288.9 226 67.3
CsaV3_4G011670 Cucumis sativus L. HOM05D007273 ORTHO05D009230 8.5e-76 287.7 227 66.1
Lalb_Chr01g0017311 Lupinus albus HOM05D007273 ORTHO05D009230 8.5e-76 287.7 243 64.6
TWI74G1215 Tripterygium wilfordii HOM05D007273 ORTHO05D009230 2.5e-75 286.2 248 60.1
Eucgr.A02345 Eucalyptus grandis HOM05D007273 ORTHO05D009230 9.4e-75 284.3 259 57.9
Gorai.006G136300 Gossypium raimondii HOM05D007273 ORTHO05D009230 1.0e-73 280.8 243 60.9
Gohir.D09G118000 Gossypium hirsutum HOM05D007273 ORTHO05D009230 1.4e-73 280.4 243 60.9
Thecc.05G153100 Theobroma cacao HOM05D007273 ORTHO05D009230 6.7e-73 278.1 254 57.5
Sabra06G0036200 Salix brachista HOM05D007273 ORTHO05D009230 2.0e-72 276.6 233 61.4
Manes.09G022200 Manihot esculenta HOM05D007273 ORTHO05D009230 2.5e-72 276.2 245 60.0
Gohir.A09G121900 Gossypium hirsutum HOM05D007273 ORTHO05D009230 9.7e-72 274.2 238 60.1
COL.COLO4_28286 Corchorus olitorius HOM05D007273 ORTHO05D009230 1.3e-71 273.9 259 57.9
Rhsim03G0024900 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.8e-70 270.0 261 54.8
Potri.006G051600 Populus trichocarpa HOM05D007273 ORTHO05D009230 3.4e-69 265.8 227 61.7
Actinidia39224 Actinidia chinensis HOM05D007273 ORTHO05D009230 5.9e-69 265.0 255 57.6
Dinv12487 Davidia involucrata HOM05D007273 ORTHO05D009230 1.3e-68 263.8 239 56.9
Carub.0004s2403 Capsella rubella HOM05D007273 ORTHO05D009230 5.0e-68 261.9 242 58.3
Nn2g15217 Nelumbo nucifera HOM05D007273 ORTHO05D009230 4.2e-67 258.8 236 58.5
PGR004G1947 Punica granatum HOM05D007273 ORTHO05D009230 5.5e-67 258.5 230 61.3
Sed0019353 Sechium edule HOM05D007273 ORTHO05D009230 5.5e-67 258.5 226 61.9
Cpa.g.sc92.54 Carica papaya HOM05D007273 ORTHO05D009230 2.7e-66 256.1 228 62.7
Lsat_1_v5_gn_9_29100 Lactuca sativa HOM05D007273 ORTHO05D009230 3.6e-66 255.8 239 56.9
C04p02970 Brassica napus HOM05D007273 ORTHO05D009230 4.7e-66 255.4 237 58.2
Ciclev10033324m.g Citrus clementina HOM05D007273 ORTHO05D009230 1.0e-65 254.2 236 57.6
BcaNung02834 Brassica carinata HOM05D007273 ORTHO05D009230 3.0e-65 252.7 234 58.5
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 3.9e-65 252.3 237 57.4
A05p02510 Brassica napus HOM05D007273 ORTHO05D009230 1.1e-64 250.8 234 57.7
BraA05t19244Z Brassica rapa HOM05D007273 ORTHO05D009230 1.1e-64 250.8 234 57.7
TAR369G0984 Trochodendron aralioides HOM05D007273 ORTHO05D009230 1.1e-64 250.8 247 54.3
vmacro07848 Vaccinium macrocarpon HOM05D007273 ORTHO05D009230 1.1e-64 250.8 264 52.7
Sp4g24020 Schrenkiella parvula HOM05D007273 ORTHO05D009230 1.5e-64 250.4 243 56.0
CARHR136850 Cardamine hirsuta HOM05D007273 ORTHO05D009230 2.0e-64 250.0 246 55.3
PGSC0003DMG401001308 Solanum tuberosum HOM05D007273 ORTHO05D009230 2.0e-64 250.0 239 54.0
Thhalv10017127m.g Eutrema salsugineum HOM05D007273 ORTHO05D009230 4.4e-64 248.8 231 57.6
Solyc02g087600.3 Solanum lycopersicum HOM05D007273 ORTHO05D009230 7.4e-64 248.1 239 54.0
THA.LOC104802102 Tarenaya hassleriana HOM05D007273 ORTHO05D009230 1.7e-63 246.9 240 56.2
AL4G40060 Arabidopsis lyrata HOM05D007273 ORTHO05D009230 2.8e-63 246.1 242 57.0
AT2G41750 Arabidopsis thaliana HOM05D007273 ORTHO05D009230 3.7e-63 245.7 245 56.3
CAN.G417.4 Capsicum annuum HOM05D007273 ORTHO05D009230 3.7e-63 245.7 250 52.4
Sopen02g032350 Solanum pennellii HOM05D007273 ORTHO05D009230 3.7e-63 245.7 239 53.6
HanXRQChr05g0128781 Helianthus annuus HOM05D007273 ORTHO05D009230 1.1e-62 244.2 238 55.0
EL10Ac3g07092 Beta vulgaris HOM05D007273 ORTHO05D009230 1.4e-62 243.8 230 56.1
Aa31LG1G23760 Aethionema arabicum HOM05D007273 ORTHO05D009230 2.4e-62 243.0 243 56.0
Nitab4.5_0000082g0140 Nicotiana tabacum HOM05D007273 ORTHO05D009230 2.4e-62 243.0 235 54.0
Peaxi162Scf00002g02715 Petunia axillaris HOM05D007273 ORTHO05D009230 1.2e-61 240.7 228 53.9
PSO339G1789 Papaver somniferum HOM05D007273 ORTHO05D009230 1.5e-61 240.4 243 55.1
ECA247G0394 Erigeron canadensis HOM05D007273 ORTHO05D009230 2.0e-61 240.0 245 52.7
SGA_v2.0_scaffold69G23119 Striga asiatica HOM05D007273 ORTHO05D009230 2.6e-61 239.6 239 54.0
Oeu017941.1 Olea europaea HOM05D007273 ORTHO05D009230 4.5e-61 238.8 254 51.6
Aqoxy1G00330 Aquilegia oxysepala HOM05D007273 ORTHO05D009230 7.7e-61 238.0 233 56.7
Rhsim03G0024700 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.3e-60 237.3 301 47.2
Cc06_g17580 Coffea canephora HOM05D007273 ORTHO05D009230 8.5e-60 234.6 255 50.6
AUR62024452 Chenopodium quinoa HOM05D007273 ORTHO05D009230 1.1e-59 234.2 253 51.4
SalBow6G5536 Salvia bowleyana HOM05D007273 ORTHO05D009230 1.4e-59 233.8 255 51.8
Sc25g0005300 Simmondsia chinensis HOM05D007273 ORTHO05D009230 1.9e-59 233.4 260 47.3
MSTRG.6428 Avicennia marina HOM05D007273 ORTHO05D009230 2.5e-59 233.0 265 48.7
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 9.4e-59 231.1 272 50.0
AUR62026041 Chenopodium quinoa HOM05D007273 ORTHO05D009230 2.1e-58 229.9 245 51.0
Migut.J01756 Erythranthe guttata HOM05D007273 ORTHO05D009230 1.4e-57 227.3 233 54.5
DCAR_003245 Daucus carota HOM05D007273 ORTHO05D009230 3.0e-57 226.1 240 51.7
Nitab4.5_0010316g0010 Nicotiana tabacum HOM05D007273 ORTHO05D009230 5.7e-56 221.9 210 54.3
MBI17_g14625_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 2.8e-47 193.0 235 47.7
SEGI_31103 Sequoiadendron giganteum HOM05D007273 ORTHO05D009230 3.5e-45 186.0 264 41.7
HPP92_016047 Vanilla planifolia HOM05D007273 ORTHO05D009230 6.5e-44 181.8 235 48.5
FAN09G1358 Fragaria x ananassa HOM05D007273 ORTHO05D009230 8.5e-44 181.4 158 63.9
FAN02G1642 Fragaria x ananassa HOM05D007273 ORTHO05D009230 6.1e-42 175.3 131 66.4
Mapoly0023s0152 Marchantia polymorpha HOM05D007273 ORTHO05D009230 4.0e-41 172.6 288 36.5
Os12g0142600 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 4.0e-41 172.6 233 44.2
Os11g0145100 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 2.2e-39 166.8 235 43.0
Pp3c17_17160 Physcomitrium patens HOM05D007273 ORTHO05D009230 2.2e-39 166.8 289 37.4
ATR0626G250 Amborella trichopoda HOM05D007273 ORTHO05D009230 2.7e-37 159.8 323 32.8
Zm00001eb163370 Zea mays HOM05D007273 ORTHO05D009230 1.7e-36 157.1 237 40.5
Rhsim03G0024400 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.5e-35 154.1 141 59.6
MBI17_g36895_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 5.5e-35 152.1 164 53.0
Rhsim03G0024300 Rhododendron simsii HOM05D007273 ORTHO05D009230 5.5e-35 152.1 141 58.9
SMO240G0020 Selaginella moellendorffii HOM05D007273 ORTHO05D009230 8.9e-33 144.8 190 48.4
Ah.04g151620 Amaranthus hybridus HOM05D007273 ORTHO05D009230 1.8e-30 137.1 242 38.0
unitig_8.g4551 Utricularia gibba HOM05D007273 ORTHO05D009230 1.6e-29 134.0 132 53.0
Hma1.2p1_1611F.1_g293550 Hydrangea macrophylla HOM05D007273 ORTHO05D009230 2.3e-28 130.2 165 46.1
Lju124C41T6 Lonicera japonica HOM05D007273 ORTHO05D009230 2.3e-28 130.2 97 68.0
Glyma.19G139000 Glycine max HOM05D007273 ORTHO05D009230 3.9e-28 129.4 97 69.1
AagrBONN_evm.TU.Sc2ySwM_228.793 Anthoceros agrestis HOM05D007273 ORTHO05D009230 6.0e-21 105.5 182 38.5
CSS0001142 Camellia sinensis var. sinensis HOM05D007273 ORTHO05D009230 1.6e-18 97.4 97 50.5
Rhsim03G0023900 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.1e-17 94.7 143 42.7
TPR.G3731 Trifolium pratense HOM05D007273 ORTHO05D009230 2.4e-14 83.6 56 78.6
MCO07G627 Micromonas commoda HOM05D007273 ORTHO05D009230 2.5e-11 73.6 220 25.5
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 8.3e-07 58.5 249 24.9
Actinidia09327 Actinidia chinensis HOM05D007273 ORTHO05D009230 2.4e-06 57.0 118 33.1
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 3.2e-06 56.6 76 35.5
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 3.2e-06 56.6 75 37.3
Cpa.g.sc28.27 Carica papaya HOM05D007273 ORTHO05D009230 4.1e-06 56.2 61 55.7
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 9.2e-06 55.1 75 37.3


User provided reference genes

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