Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0181 Cannabis sativa HOM05D002654 ORTHO05D002430 7.0e-226 787.3 515 100.0
Duzib084G1162 Durio zibethinus HOM05D002654 ORTHO05D002430 5.1e-27 126.7 473 30.7
Thecc.03G084900 Theobroma cacao HOM05D002654 ORTHO05D002430 1.8e-24 118.2 473 29.8
Gorai.001G071900 Gossypium raimondii HOM05D002654 ORTHO05D002430 2.4e-24 117.9 474 29.5
Potri.015G062600 Populus trichocarpa HOM05D002654 ORTHO05D002430 3.1e-24 117.5 485 30.7
Gohir.A07G063650 Gossypium hirsutum HOM05D002654 ORTHO05D002430 4.0e-24 117.1 474 29.5
COL.COLO4_24533 Corchorus olitorius HOM05D002654 ORTHO05D002430 5.3e-24 116.7 475 29.7
Gohir.D07G068400 Gossypium hirsutum HOM05D002654 ORTHO05D002430 1.5e-23 115.2 474 29.3
Duzib205G1664 Durio zibethinus HOM05D002654 ORTHO05D002430 2.9e-22 110.9 477 30.8
RcHm_v2.0_Chr7g0181121 Rosa chinensis HOM05D002654 ORTHO05D002430 5.5e-21 106.7 424 32.8
Migut.D01825 Erythranthe guttata HOM05D002654 ORTHO05D002430 1.6e-20 105.1 521 27.8
Dinv19955 Davidia involucrata HOM05D000087 ORTHO05D000439 2.1e-20 104.8 482 29.0
Gorai.008G192500 Gossypium raimondii HOM05D002654 ORTHO05D002430 2.1e-20 104.8 474 29.1
Gohir.D12G179400 Gossypium hirsutum HOM05D002654 ORTHO05D002430 4.6e-20 103.6 506 28.9
CsaV3_1G005380 Cucumis sativus L. HOM05D002654 ORTHO05D002430 6.0e-20 103.2 490 28.2
Sed0007876 Sechium edule HOM05D002654 ORTHO05D002430 6.0e-20 103.2 488 29.1
QL10p016685 Quercus lobata HOM05D002654 ORTHO05D002430 7.9e-20 102.8 386 32.1
Gohir.A12G176900 Gossypium hirsutum HOM05D002654 ORTHO05D002430 1.0e-19 102.4 470 28.7
Cc04_g16770 Coffea canephora HOM05D000087 ORTHO05D000439 3.0e-19 100.9 478 28.7
Sed0007158 Sechium edule HOM05D002654 ORTHO05D002430 3.9e-19 100.5 483 26.7
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 5.1e-19 100.1 490 27.8
Dinv38698 Davidia involucrata HOM05D002654 ORTHO05D002430 5.1e-19 100.1 485 29.1
ClCG04G012340 Citrullus lanatus HOM05D002654 ORTHO05D002430 8.7e-19 99.4 488 27.3
Manes.06G093600 Manihot esculenta HOM05D002654 ORTHO05D002430 1.1e-18 99.0 524 28.1
GSVIVG01008021001 Vitis vinifera HOM05D002654 ORTHO05D002430 2.5e-18 97.8 434 31.3
FAN08G1738 Fragaria x ananassa HOM05D002654 ORTHO05D002430 3.3e-18 97.4 365 34.0
FAN13G3070 Fragaria x ananassa HOM05D002654 ORTHO05D002430 5.7e-18 96.7 434 32.7
CiPaw.11G043200 Carya illinoinensis HOM05D002654 ORTHO05D002430 7.4e-18 96.3 469 28.1
Manes.05G100700 Manihot esculenta HOM05D002654 ORTHO05D002430 7.4e-18 96.3 424 29.0
PGR142G0432 Punica granatum HOM05D002654 ORTHO05D002430 7.4e-18 96.3 480 29.0
FAN04G1767 Fragaria x ananassa HOM05D002654 ORTHO05D002430 9.6e-18 95.9 378 34.1
Sabra15G0087900 Salix brachista HOM05D002654 ORTHO05D002430 9.6e-18 95.9 478 29.7
FvH4_5g15090 Fragaria vesca HOM05D002654 ORTHO05D002430 1.3e-17 95.5 432 32.4
DCAR_016544 Daucus carota HOM05D002654 ORTHO05D002430 3.7e-17 94.0 476 26.5
Peaxi162Scf00541g00022 Petunia axillaris HOM05D002654 ORTHO05D002430 4.8e-17 93.6 430 30.0
CSS0036856 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 2.4e-16 91.3 534 27.0
FAN18G2581 Fragaria x ananassa HOM05D002654 ORTHO05D002430 3.1e-16 90.9 438 32.9
Haze_07337 Corylus avellana HOM05D002654 ORTHO05D002430 4.1e-16 90.5 475 28.8
MD14G1198800 Malus domestica HOM05D002654 ORTHO05D002430 9.0e-16 89.4 350 32.9
Prupe.5G191900 Prunus persica HOM05D002654 ORTHO05D002430 1.5e-15 88.6 432 31.2
CSS0037456 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 5.8e-15 86.7 531 27.3
Nitab4.5_0000703g0220 Nicotiana tabacum HOM05D002654 ORTHO05D002430 7.6e-15 86.3 425 28.2
Manes.14G077400 Manihot esculenta HOM05D002654 ORTHO05D002430 1.3e-14 85.5 450 28.4
CSS0006941 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 1.7e-14 85.1 324 30.6
Solyc06g069880.1 Solanum lycopersicum HOM05D002654 ORTHO05D002430 2.9e-14 84.3 509 26.3
TAR629G0269 Trochodendron aralioides HOM05D002654 ORTHO05D002430 2.9e-14 84.3 451 27.9
Actinidia37635 Actinidia chinensis HOM05D002654 ORTHO05D002430 5.0e-14 83.6 399 27.6
Aqoxy3G00669 Aquilegia oxysepala HOM05D002654 ORTHO05D002430 6.5e-14 83.2 555 28.1
Cfa018955 Carpinus fangiana HOM05D002654 ORTHO05D002430 1.1e-13 82.4 398 29.9
Nitab4.5_0007501g0020 Nicotiana tabacum HOM05D002654 ORTHO05D002430 1.4e-13 82.0 441 27.0
Rhsim08G0155700 Rhododendron simsii HOM05D002654 ORTHO05D002430 1.9e-13 81.6 396 28.3
TAR371G1053 Trochodendron aralioides HOM05D002654 ORTHO05D002430 1.9e-13 81.6 448 27.0
Peaxi162Scf00274g00075 Petunia axillaris HOM05D002654 ORTHO05D002430 3.2e-13 80.9 483 26.7
PGSC0003DMG400033102 Solanum tuberosum HOM05D002654 ORTHO05D002430 3.2e-13 80.9 507 25.8
Sopen06g027150 Solanum pennellii HOM05D002654 ORTHO05D002430 5.5e-13 80.1 509 25.7
Nn3g17221 Nelumbo nucifera HOM05D002654 ORTHO05D002430 7.2e-13 79.7 450 29.3
CAN.G837.8 Capsicum annuum HOM05D002654 ORTHO05D002430 9.3e-13 79.3 399 28.8
Sopen05g003360 Solanum pennellii HOM05D002654 ORTHO05D002430 9.3e-13 79.3 416 27.2
Eucgr.B00480 Eucalyptus grandis HOM05D002654 ORTHO05D002430 2.7e-12 77.8 497 26.8
Nitab4.5_0002352g0050 Nicotiana tabacum HOM05D002654 ORTHO05D002430 2.7e-12 77.8 487 25.3
Cpa.g.sc128.17 Carica papaya HOM05D002654 ORTHO05D002430 6.1e-12 76.6 431 28.3
Cpa.g.sc111.2 Carica papaya HOM05D002654 ORTHO05D002430 1.0e-11 75.9 447 27.5
Dinv16639 Davidia involucrata HOM05D002654 ORTHO05D002430 1.0e-11 75.9 424 27.8
Solyc03g116160.1 Solanum lycopersicum HOM05D002654 ORTHO05D002430 1.0e-11 75.9 465 26.0
Oeu006506.1 Olea europaea HOM05D002654 ORTHO05D002430 1.3e-11 75.5 167 37.7
Ah.02g113400 Amaranthus hybridus HOM05D002654 ORTHO05D002430 3.9e-11 73.9 412 26.7
Nn4g23142 Nelumbo nucifera HOM05D002654 ORTHO05D002430 3.9e-11 73.9 411 26.8
QL03p064352 Quercus lobata HOM05D002654 ORTHO05D002430 3.9e-11 73.9 538 25.3
Sopen03g035130 Solanum pennellii HOM05D002654 ORTHO05D002430 3.9e-11 73.9 381 27.8
Solyc05g007480.1 Solanum lycopersicum HOM05D002654 ORTHO05D002430 5.1e-11 73.6 350 27.1
QL03p062934 Quercus lobata HOM05D002654 ORTHO05D002430 8.7e-11 72.8 538 25.1
Peaxi162Scf00823g00217 Petunia axillaris HOM05D002654 ORTHO05D002430 1.1e-10 72.4 333 29.7
CiPaw.12G013900 Carya illinoinensis HOM05D002654 ORTHO05D002430 1.5e-10 72.0 383 27.2
FAN17G2513 Fragaria x ananassa HOM05D002654 ORTHO05D002430 1.5e-10 72.0 546 24.7
Gohir.D03G092800 Gossypium hirsutum HOM05D002654 ORTHO05D002430 1.5e-10 72.0 382 28.3
CAN.G58.27 Capsicum annuum HOM05D002654 ORTHO05D002430 1.9e-10 71.6 334 28.1
Peaxi162Scf00013g00213 Petunia axillaris HOM05D002654 ORTHO05D002430 1.9e-10 71.6 253 29.2
Peaxi162Scf06066g00003 Petunia axillaris HOM05D000087 ORTHO05D002430 1.9e-10 71.6 253 29.2
RcHm_v2.0_Chr4g0439931 Rosa chinensis HOM05D002654 ORTHO05D002430 1.9e-10 71.6 449 27.6
Lsat_1_v5_gn_4_108360 Lactuca sativa HOM05D002654 ORTHO05D002430 2.5e-10 71.2 401 25.9
CiPaw.06G084100 Carya illinoinensis HOM05D002654 ORTHO05D002430 4.3e-10 70.5 459 28.5
COL.COLO4_23006 Corchorus olitorius HOM05D002654 ORTHO05D002430 4.3e-10 70.5 409 27.4
Gohir.A03G098250 Gossypium hirsutum HOM05D002654 ORTHO05D002430 4.3e-10 70.5 528 26.9
Gohir.A12G105550 Gossypium hirsutum HOM05D002654 ORTHO05D002430 4.3e-10 70.5 528 26.9
Gorai.003G096700 Gossypium raimondii HOM05D002654 ORTHO05D002430 4.3e-10 70.5 382 28.3
Prupe.1G273300 Prunus persica HOM05D002654 ORTHO05D002430 4.3e-10 70.5 435 27.4
Dinv34160 Davidia involucrata HOM05D002654 ORTHO05D002430 5.7e-10 70.1 431 26.9
FvH4_4g31450 Fragaria vesca HOM05D002654 ORTHO05D002430 5.7e-10 70.1 550 24.2
PGSC0003DMG400031263 Solanum tuberosum HOM05D002654 ORTHO05D002430 5.7e-10 70.1 325 26.2
VMungo1215G1652 Vigna mungo HOM05D002654 ORTHO05D002430 5.7e-10 70.1 443 26.4
Ciclev10031315m.g Citrus clementina HOM05D002654 ORTHO05D002430 7.4e-10 69.7 451 28.4
FAN22G0634 Fragaria x ananassa HOM05D002654 ORTHO05D002430 7.4e-10 69.7 546 24.5
Nitab4.5_0012137g0010 Nicotiana tabacum HOM05D002654 ORTHO05D002430 7.4e-10 69.7 257 30.4
CSS0017824 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 9.7e-10 69.3 439 28.2
CiPaw.05G136200 Carya illinoinensis HOM05D002654 ORTHO05D002430 1.3e-09 68.9 437 27.2
Phvul.002G086000 Phaseolus vulgaris HOM05D002654 ORTHO05D002430 1.3e-09 68.9 443 26.2
SalBow7G4240 Salvia bowleyana HOM05D002654 ORTHO05D002430 1.6e-09 68.6 177 37.9
CAN.G628.23 Capsicum annuum HOM05D002654 ORTHO05D002430 2.2e-09 68.2 433 26.6
ECA232G0660 Erigeron canadensis HOM05D000087 ORTHO05D000439 2.2e-09 68.2 201 33.8
TWI15G0870 Tripterygium wilfordii HOM05D002654 ORTHO05D002430 2.2e-09 68.2 418 28.0
MSTRG.23024 Avicennia marina HOM05D002654 ORTHO05D002430 4.8e-09 67.0 436 25.5
CSS0046015 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 4.8e-09 67.0 438 27.6
Ciclev10020017m.g Citrus clementina HOM05D002654 ORTHO05D002430 4.8e-09 67.0 442 28.3
Nitab4.5_0000842g0040 Nicotiana tabacum HOM05D002654 ORTHO05D002430 4.8e-09 67.0 257 30.4
FAN07G1505 Fragaria x ananassa HOM05D002654 ORTHO05D002430 6.3e-09 66.6 546 24.5
Gohir.A03G066300 Gossypium hirsutum HOM05D002654 ORTHO05D002430 6.3e-09 66.6 383 27.7
Hma1.2p1_0795F.1_g218740 Hydrangea macrophylla HOM05D002654 ORTHO05D002430 8.2e-09 66.2 406 27.1
ECA234G4854 Erigeron canadensis HOM05D000087 ORTHO05D000439 1.4e-08 65.5 428 27.1
Lalb_Chr17g0340621 Lupinus albus HOM05D002654 ORTHO05D002430 1.4e-08 65.5 443 25.5
Peaxi162Scf00036g00182 Petunia axillaris HOM05D002654 ORTHO05D002430 1.4e-08 65.5 347 28.5
Oeu022206.1 Olea europaea HOM05D002654 ORTHO05D002430 3.1e-08 64.3 282 29.4
Gorai.005G141100 Gossypium raimondii HOM05D002654 ORTHO05D002430 4.1e-08 63.9 423 26.5
Oeu033362.1 Olea europaea HOM05D002654 ORTHO05D002430 4.1e-08 63.9 315 28.6
Eucgr.G02509 Eucalyptus grandis HOM05D002654 ORTHO05D002430 5.3e-08 63.5 541 27.0
MD16G1073600 Malus domestica HOM05D002654 ORTHO05D002430 5.3e-08 63.5 441 27.0
SGA_v2.0_scaffold7G04069 Striga asiatica HOM05D002654 ORTHO05D002430 5.3e-08 63.5 169 34.3
Duzib251G0139 Durio zibethinus HOM05D002654 ORTHO05D002430 6.9e-08 63.2 520 24.8
Rhsim12G0063400 Rhododendron simsii HOM05D002654 ORTHO05D002430 6.9e-08 63.2 437 26.8
Ah.02g129730 Amaranthus hybridus HOM05D002654 ORTHO05D002430 9.0e-08 62.8 457 26.3
Ah.03g135150 Amaranthus hybridus HOM05D002654 ORTHO05D002430 9.0e-08 62.8 423 25.5
Manes.01G186300 Manihot esculenta HOM05D002654 ORTHO05D002430 1.2e-07 62.4 416 26.2
Glyma.02G106800 Glycine max HOM05D002654 ORTHO05D002430 1.5e-07 62.0 447 27.3
HanXRQChr12g0380721 Helianthus annuus HOM05D002654 ORTHO05D002430 2.0e-07 61.6 428 26.6
PSO339G6607 Papaver somniferum HOM05D002654 ORTHO05D002430 2.6e-07 61.2 412 26.2
Nitab4.5_0000269g0010 Nicotiana tabacum HOM05D002654 ORTHO05D002430 3.4e-07 60.8 272 26.1
Actinidia19874 Actinidia chinensis HOM05D002654 ORTHO05D002430 4.5e-07 60.5 388 26.5
BcaC07g38950 Brassica carinata HOM05D010051 ORTHO05D002430 4.5e-07 60.5 137 36.5
C08p18940 Brassica napus HOM05D010051 ORTHO05D002430 4.5e-07 60.5 137 36.5
Lalb_Chr09g0329321 Lupinus albus HOM05D002654 ORTHO05D002430 4.5e-07 60.5 446 27.4
MD06G1192200 Malus domestica HOM05D002654 ORTHO05D002430 5.9e-07 60.1 347 29.1
Rhsim08G0156100 Rhododendron simsii HOM05D002654 ORTHO05D002430 5.9e-07 60.1 396 26.3
Sc04g0008200 Simmondsia chinensis HOM05D002654 ORTHO05D002430 7.7e-07 59.7 427 27.4
TWI60G0873 Tripterygium wilfordii HOM05D002654 ORTHO05D002430 7.7e-07 59.7 503 23.9
Gohir.D02G125400 Gossypium hirsutum HOM05D002654 ORTHO05D002430 1.0e-06 59.3 423 26.2
A08p30180 Brassica napus HOM05D010051 ORTHO05D002430 1.3e-06 58.9 137 35.0
BraA08t34952Z Brassica rapa HOM05D010051 ORTHO05D002430 1.3e-06 58.9 137 35.0
Cfa008990 Carpinus fangiana HOM05D002654 ORTHO05D002430 1.3e-06 58.9 442 26.7
AUR62005769 Chenopodium quinoa HOM05D002654 ORTHO05D002430 1.3e-06 58.9 449 25.8
Oeu054885.1 Olea europaea HOM05D002654 ORTHO05D002430 1.3e-06 58.9 422 27.3
Atru.chr9.2262 Acer truncatum HOM05D002654 ORTHO05D002430 1.7e-06 58.5 165 33.3
BolC8t49520H Brassica oleracea HOM05D010051 ORTHO05D002430 1.7e-06 58.5 137 35.8
Cc11_g13080 Coffea canephora HOM05D002654 ORTHO05D002430 1.7e-06 58.5 168 33.3
Thecc.02G347200 Theobroma cacao HOM05D002654 ORTHO05D002430 2.9e-06 57.8 517 25.1
MSTRG.7806 Avicennia marina HOM05D002654 ORTHO05D002430 5.0e-06 57.0 277 27.4
Glyma.08G300500 Glycine max HOM05D002654 ORTHO05D002430 5.0e-06 57.0 453 24.9
Sc04g0008190 Simmondsia chinensis HOM05D002654 ORTHO05D002430 5.0e-06 57.0 429 24.5
BcaB03g12954 Brassica carinata HOM05D010051 ORTHO05D002430 6.5e-06 56.6 139 35.3
Hma1.2p1_0265F.1_g106720 Hydrangea macrophylla HOM05D002654 ORTHO05D002430 8.5e-06 56.2 433 25.6
Medtr5g040340 Medicago truncatula HOM05D002654 ORTHO05D002430 8.5e-06 56.2 435 25.3


User provided reference genes

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