Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0171 Cannabis sativa HOM05D012483 ORTHO05D000880 4.4e-68 261.2 130 100.0
CANSAT71G0010 Cannabis sativa HOM05D012483 ORTHO05D000880 2.3e-53 212.2 123 85.4
CANSAT78G0316 Cannabis sativa HOM05D000429 ORTHO05D000352 8.0e-46 187.2 109 83.5
CANSAT78G0921 Cannabis sativa HOM05D012483 ORTHO05D000880 1.0e-45 186.8 110 83.6
CANSAT56G0538 Cannabis sativa HOM05D012483 ORTHO05D000352 1.8e-45 186.0 109 82.6
CANSAT35G1950 Cannabis sativa HOM05D000429 ORTHO05D000352 1.5e-44 183.0 125 74.4
CANSAT35G1177 Cannabis sativa HOM05D012483 ORTHO05D000352 5.1e-32 141.4 75 86.7
CANSAT35G0915 Cannabis sativa HOM05D012483 ORTHO05D000352 5.2e-29 131.3 75 80.0
CANSAT11G0771 Cannabis sativa HOM05D012483 ORTHO05D000352 4.4e-28 128.3 77 83.1
CANSAT80G0247 Cannabis sativa HOM05D012483 ORTHO05D000352 2.4e-26 122.5 65 84.6
CANSAT21G0361 Cannabis sativa HOM05D012483 ORTHO05D000352 6.8e-21 104.4 62 75.8
CANSAT35G0088 Cannabis sativa HOM05D012483 ORTHO05D000352 4.2e-18 95.1 51 92.2
CANSAT54G2836 Cannabis sativa HOM05D000429 ORTHO05D000352 3.5e-17 92.0 125 36.0
CANSAT78G1657 Cannabis sativa HOM05D012483 ORTHO05D000352 1.0e-16 90.5 57 70.2
DCAR_031974 Daucus carota HOM05D000429 ORTHO05D000352 1.0e-16 90.5 123 38.2
CANSAT54G0803 Cannabis sativa HOM05D008422 ORTHO05D000352 1.7e-16 89.7 125 34.4
CANSAT11G1703 Cannabis sativa HOM05D012483 ORTHO05D000352 1.5e-15 86.7 56 80.4
CANSAT21G2110 Cannabis sativa HOM05D008422 ORTHO05D000352 1.5e-15 86.7 127 36.2
CANSAT54G2130 Cannabis sativa HOM05D012483 ORTHO05D000352 3.3e-15 85.5 50 74.0
Oeu007675.1 Olea europaea HOM05D005901 ORTHO05D000880 6.2e-14 81.3 126 30.2
Oeu012288.1 Olea europaea HOM05D005901 ORTHO05D000880 8.1e-14 80.9 126 31.0
Oeu055455.1 Olea europaea HOM05D005901 ORTHO05D000880 8.1e-14 80.9 126 31.0
CANSAT01G1774 Cannabis sativa HOM05D008422 ORTHO05D000352 1.1e-13 80.5 105 39.0
CANSAT64G1284 Cannabis sativa HOM05D009938 ORTHO05D000880 1.1e-13 80.5 120 32.5
CANSAT11G2410 Cannabis sativa HOM05D009938 ORTHO05D000880 1.4e-13 80.1 120 32.5
Oeu014576.1 Olea europaea HOM05D005901 ORTHO05D000880 1.8e-13 79.7 126 30.2
CANSAT80G2143 Cannabis sativa HOM05D009938 ORTHO05D000880 2.4e-13 79.3 120 32.5
Oeu053585.1 Olea europaea HOM05D001436 ORTHO05D000880 2.4e-13 79.3 123 30.9
Oeu022520.1 Olea europaea HOM05D005901 ORTHO05D000880 5.3e-13 78.2 126 30.2
CANSAT56G0797 Cannabis sativa HOM05D000429 ORTHO05D000352 6.9e-13 77.8 99 36.4
CANSAT01G0191 Cannabis sativa HOM05D009938 ORTHO05D000880 1.2e-12 77.0 120 33.3
TPR.G38533 Trifolium pratense HOM05D009653 ORTHO05D011212 1.2e-12 77.0 129 31.0
CANSAT64G2626 Cannabis sativa HOM05D008422 ORTHO05D000352 2.0e-12 76.3 105 36.2
ECA232G1382 Erigeron canadensis HOM05D000429 ORTHO05D000880 2.6e-12 75.9 126 30.2
CANSAT11G0599 Cannabis sativa HOM05D000429 ORTHO05D000352 5.8e-12 74.7 127 34.6
CANSAT21G0172 Cannabis sativa HOM05D012483 ORTHO05D000352 5.8e-12 74.7 39 92.3
CANSAT54G2906 Cannabis sativa HOM05D008422 ORTHO05D000352 9.9e-12 73.9 120 32.5
CANSAT01G2084 Cannabis sativa HOM05D009938 ORTHO05D000880 1.3e-11 73.6 117 32.5
CANSAT35G0387 Cannabis sativa HOM05D009938 ORTHO05D000880 1.3e-11 73.6 119 33.6
CSS0029770 Camellia sinensis var. sinensis HOM05D001436 ORTHO05D000880 1.7e-11 73.2 118 31.4
ECA240G3470 Erigeron canadensis HOM05D000047 ORTHO05D000044 1.7e-11 73.2 133 33.1
MBI18_g41471_MAGBIO Magnolia biondii HOM05D001436 ORTHO05D000880 2.2e-11 72.8 123 30.9
Manes.18G056202 Manihot esculenta HOM05D000429 ORTHO05D000880 2.9e-11 72.4 122 32.0
CANSAT25G1071 Cannabis sativa HOM05D008422 ORTHO05D000352 4.9e-11 71.6 126 30.2
CSS0022880 Camellia sinensis var. sinensis HOM05D001436 ORTHO05D000880 6.4e-11 71.2 118 30.5
CANSAT11G2221 Cannabis sativa HOM05D009938 ORTHO05D000880 8.4e-11 70.9 98 33.7
Oeu012009.1 Olea europaea HOM05D005901 ORTHO05D000880 8.4e-11 70.9 99 33.3
Oeu035291.1 Olea europaea HOM05D001436 ORTHO05D000880 8.4e-11 70.9 105 34.3
TPR.G30696 Trifolium pratense HOM05D000429 ORTHO05D000880 8.4e-11 70.9 123 30.1
CANSAT25G2709 Cannabis sativa HOM05D009938 ORTHO05D000880 1.1e-10 70.5 106 33.0
MBI07_g06422_MAGBIO Magnolia biondii HOM05D001436 ORTHO05D000880 1.9e-10 69.7 123 30.9
FvH4_3g17101 Fragaria vesca HOM05D000429 ORTHO05D000352 3.2e-10 68.9 126 27.8
ECA238G3517 Erigeron canadensis HOM05D000047 ORTHO05D000044 4.2e-10 68.6 126 28.6
CANSAT25G2094 Cannabis sativa HOM05D040811 ORTHO05D000880 5.4e-10 68.2 107 29.9
Manes.02G203175 Manihot esculenta HOM05D000429 ORTHO05D000352 5.4e-10 68.2 122 28.7
CSS0002549 Camellia sinensis var. sinensis HOM05D001436 ORTHO05D000880 9.3e-10 67.4 118 30.5
CANSAT21G1066 Cannabis sativa HOM05D009938 ORTHO05D000880 1.6e-09 66.6 127 29.9
Lj5g0013972 Lotus japonicus HOM05D000429 ORTHO05D002578 1.6e-09 66.6 115 32.2
MBI08_g12261_MAGBIO Magnolia biondii HOM05D001436 ORTHO05D000880 1.6e-09 66.6 118 30.5
MBI11_g00240_MAGBIO Magnolia biondii HOM05D001436 ORTHO05D000880 1.6e-09 66.6 116 31.9
PSO782G2329 Papaver somniferum HOM05D000014 ORTHO05D000016 1.6e-09 66.6 102 32.4
CANSAT01G1361 Cannabis sativa HOM05D000429 ORTHO05D000352 2.1e-09 66.2 84 40.5
CANSAT35G1472 Cannabis sativa HOM05D009938 ORTHO05D000880 3.5e-09 65.5 120 28.3
ECA240G2638 Erigeron canadensis HOM05D000047 ORTHO05D000044 3.5e-09 65.5 126 27.8
MBI15_g11945_MAGBIO Magnolia biondii HOM05D001436 ORTHO05D000880 3.5e-09 65.5 118 31.4
MBI19_g45780_MAGBIO Magnolia biondii HOM05D001436 ORTHO05D000880 3.5e-09 65.5 120 31.7
Manes.14G150022 Manihot esculenta HOM05D000429 ORTHO05D000880 3.5e-09 65.5 120 28.3
Lj3g0010754 Lotus japonicus HOM05D000429 ORTHO05D000880 4.6e-09 65.1 115 31.3
CANSAT80G0151 Cannabis sativa HOM05D009938 ORTHO05D000880 6.0e-09 64.7 120 29.2
CANSAT21G0584 Cannabis sativa HOM05D009938 ORTHO05D000880 1.0e-08 63.9 98 32.7
Manes.10G076111 Manihot esculenta HOM05D000047 ORTHO05D000352 1.0e-08 63.9 102 32.4
VMungo0540G1972 Vigna mungo HOM05D008322 ORTHO05D000880 1.0e-08 63.9 108 32.4
PSO675G1134 Papaver somniferum HOM05D009926 ORTHO05D002449 1.3e-08 63.5 107 30.8
TWI23G1233 Tripterygium wilfordii HOM05D000014 ORTHO05D000016 1.7e-08 63.2 102 32.4
CANSAT11G1685 Cannabis sativa HOM05D009938 ORTHO05D000880 2.3e-08 62.8 96 33.3
VMungo0251G1574 Vigna mungo HOM05D004090 ORTHO05D000880 2.3e-08 62.8 117 34.2
PSO063G2016 Papaver somniferum HOM05D009926 ORTHO05D002449 3.0e-08 62.4 107 32.7
PSO170G2292 Papaver somniferum HOM05D000014 ORTHO05D000016 3.0e-08 62.4 116 30.2
PSO339G1159 Papaver somniferum HOM05D009926 ORTHO05D002449 3.0e-08 62.4 107 33.6
CANSAT11G1756 Cannabis sativa HOM05D009938 ORTHO05D000880 3.9e-08 62.0 98 30.6
VMungo1127G1971 Vigna mungo HOM05D008322 ORTHO05D000880 3.9e-08 62.0 118 31.4
MBI16_g25487_MAGBIO Magnolia biondii HOM05D001436 ORTHO05D000880 5.1e-08 61.6 107 29.9
arahy.Tifrunner.gnm1.ann1.R1MCB0 Arachis hypogaea HOM05D000429 ORTHO05D000880 6.6e-08 61.2 129 27.9
CANSAT21G0196 Cannabis sativa HOM05D000429 ORTHO05D000880 6.6e-08 61.2 126 33.3
PSO541G0525 Papaver somniferum HOM05D000014 ORTHO05D000016 6.6e-08 61.2 102 29.4
CANSAT56G1739 Cannabis sativa HOM05D009938 ORTHO05D000880 8.7e-08 60.8 115 28.7
CANSAT64G2525 Cannabis sativa HOM05D009938 ORTHO05D000880 8.7e-08 60.8 120 27.5
VMungo0720G2302 Vigna mungo HOM05D008322 ORTHO05D000880 8.7e-08 60.8 126 29.4
ECA240G1209 Erigeron canadensis HOM05D000047 ORTHO05D000044 1.1e-07 60.5 120 25.8
MD02G1206700 Malus domestica HOM05D000014 ORTHO05D000016 1.5e-07 60.1 97 33.0
PSO478G1612 Papaver somniferum HOM05D000429 ORTHO05D000352 1.5e-07 60.1 106 34.0
VMungo0251G0875 Vigna mungo HOM05D008322 ORTHO05D000880 1.5e-07 60.1 99 34.3
VMungo0720G1635 Vigna mungo HOM05D008322 ORTHO05D000880 1.5e-07 60.1 101 32.7
ECA240G0821 Erigeron canadensis HOM05D003069 ORTHO05D002578 1.9e-07 59.7 114 28.1
ECA247G3761 Erigeron canadensis HOM05D003069 ORTHO05D002578 1.9e-07 59.7 114 28.9
HanXRQChr02g0044181 Helianthus annuus HOM05D003069 ORTHO05D002578 1.9e-07 59.7 114 29.8
MBI01_g07127_MAGBIO Magnolia biondii HOM05D001436 ORTHO05D000880 1.9e-07 59.7 126 29.4
ECA238G2097 Erigeron canadensis HOM05D003069 ORTHO05D002578 2.5e-07 59.3 117 29.9
PSO339G5834 Papaver somniferum HOM05D000014 ORTHO05D000016 2.5e-07 59.3 116 30.2
PSO832G0268 Papaver somniferum HOM05D009926 ORTHO05D002449 2.5e-07 59.3 108 30.6
CANSAT01G3249 Cannabis sativa HOM05D000017 ORTHO05D000013 3.3e-07 58.9 48 50.0
ECA240G2546 Erigeron canadensis HOM05D003069 ORTHO05D002578 3.3e-07 58.9 114 28.9
PSO170G3679 Papaver somniferum HOM05D000014 ORTHO05D000016 4.3e-07 58.5 109 29.4
ECA246G2201 Erigeron canadensis HOM05D000047 ORTHO05D000044 5.6e-07 58.2 126 26.2
ECA247G2089 Erigeron canadensis HOM05D000047 ORTHO05D000044 5.6e-07 58.2 114 28.1
Sopen08g007090 Solanum pennellii HOM05D000047 ORTHO05D001383 5.6e-07 58.2 100 29.0
VMungo0331G0341 Vigna mungo HOM05D000429 ORTHO05D002449 5.6e-07 58.2 108 31.5
Ca_27479_v3 Cicer arietinum L. HOM05D000014 ORTHO05D000016 7.3e-07 57.8 114 26.3
HanXRQChr10g0295011 Helianthus annuus HOM05D000047 ORTHO05D000044 7.3e-07 57.8 117 29.1
VMungo0251G1616 Vigna mungo HOM05D008322 ORTHO05D000880 7.3e-07 57.8 87 32.2
ECA236G2902 Erigeron canadensis HOM05D000047 ORTHO05D000044 9.6e-07 57.4 126 26.2
ECA240G4216 Erigeron canadensis HOM05D000047 ORTHO05D000044 9.6e-07 57.4 117 25.6
ECA240G4278 Erigeron canadensis HOM05D000047 ORTHO05D000044 1.3e-06 57.0 114 27.2
ECA246G4146 Erigeron canadensis HOM05D003069 ORTHO05D002578 1.3e-06 57.0 114 26.3
PSO063G6299 Papaver somniferum HOM05D000014 ORTHO05D000016 1.3e-06 57.0 102 28.4
Hund00874 Selenicereus undatus HOM05D000047 ORTHO05D001383 1.3e-06 57.0 118 25.4
CANSAT80G0833 Cannabis sativa HOM05D040811 ORTHO05D000880 1.6e-06 56.6 105 27.6
MBI08_g21303_MAGBIO Magnolia biondii HOM05D001436 ORTHO05D000880 1.6e-06 56.6 102 31.4
TPR.G34595 Trifolium pratense HOM05D000429 ORTHO05D000880 1.6e-06 56.6 104 30.8
MD10G1200800 Malus domestica HOM05D000014 ORTHO05D000016 2.1e-06 56.2 97 30.9
Hund15656 Selenicereus undatus HOM05D000047 ORTHO05D001383 2.1e-06 56.2 119 24.4
TWI38G0384 Tripterygium wilfordii HOM05D000429 ORTHO05D000880 2.1e-06 56.2 108 33.3
CSS0009224 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 2.8e-06 55.8 122 25.4
Ca_19616_v3 Cicer arietinum L. HOM05D000014 ORTHO05D000016 2.8e-06 55.8 116 25.0
ECA232G1088 Erigeron canadensis HOM05D000014 ORTHO05D000016 2.8e-06 55.8 101 30.7
ECA240G3679 Erigeron canadensis HOM05D000047 ORTHO05D000044 2.8e-06 55.8 117 27.4
FvH4_6g11892 Fragaria vesca HOM05D000429 ORTHO05D000880 2.8e-06 55.8 119 24.4
Sopen01g018560 Solanum pennellii HOM05D000047 ORTHO05D001383 2.8e-06 55.8 117 25.6
ECA246G3005 Erigeron canadensis HOM05D003069 ORTHO05D002578 3.6e-06 55.5 114 28.1
ECA247G3191 Erigeron canadensis HOM05D003069 ORTHO05D002578 3.6e-06 55.5 122 27.9
Thecc.02G247600 Theobroma cacao HOM05D008893 ORTHO05D001383 3.6e-06 55.5 111 28.8
VMungo1127G1609 Vigna mungo HOM05D008322 ORTHO05D000880 3.6e-06 55.5 72 36.1
CSS0016793 Camellia sinensis var. sinensis HOM05D000429 ORTHO05D002449 4.8e-06 55.1 125 27.2
ECA232G4948 Erigeron canadensis HOM05D003069 ORTHO05D002578 4.8e-06 55.1 114 26.3
ECA238G3068 Erigeron canadensis HOM05D000006 ORTHO05D000016 4.8e-06 55.1 101 29.7
CANSAT21G1212 Cannabis sativa HOM05D008422 ORTHO05D000352 6.2e-06 54.7 109 28.4
MD08G1150100 Malus domestica HOM05D000014 ORTHO05D000016 6.2e-06 54.7 97 29.9
EL10Ac2g02650 Beta vulgaris HOM05D000429 ORTHO05D000880 8.1e-06 54.3 120 26.7
EL10Ac4g08314 Beta vulgaris HOM05D000429 ORTHO05D000880 8.1e-06 54.3 120 26.7
ECA234G2506 Erigeron canadensis HOM05D000047 ORTHO05D002578 8.1e-06 54.3 114 26.3
ECA236G2232 Erigeron canadensis HOM05D000014 ORTHO05D000093 8.1e-06 54.3 98 31.6
ECA238G4154 Erigeron canadensis HOM05D011678 ORTHO05D002578 8.1e-06 54.3 125 28.0
ECA240G1153 Erigeron canadensis HOM05D000014 ORTHO05D000016 8.1e-06 54.3 101 28.7
ECA246G3590 Erigeron canadensis HOM05D000047 ORTHO05D000044 8.1e-06 54.3 114 25.4
Sopen03g009310 Solanum pennellii HOM05D000047 ORTHO05D000044 8.1e-06 54.3 109 27.5


User provided reference genes

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