Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 3.4e-175 618.2 316 100.0
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 1.7e-134 483.0 277 89.9
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 1.8e-120 436.4 277 79.8
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 5.0e-118 428.3 301 75.1
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 5.0e-118 428.3 277 79.1
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 8.6e-118 427.6 277 78.0
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 1.5e-117 426.8 277 78.7
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.9e-117 426.4 277 78.7
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 4.3e-117 425.2 277 77.6
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 9.5e-117 424.1 277 76.9
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.2e-116 423.7 301 73.8
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 6.1e-116 421.4 312 71.8
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 1.0e-115 420.6 311 72.3
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 2.3e-115 419.5 305 73.4
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 3.1e-115 419.1 275 77.1
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 1.5e-114 416.8 277 75.5
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 3.4e-114 415.6 277 76.2
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 4.4e-114 415.2 296 73.0
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 4.4e-114 415.2 277 74.7
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 7.5e-114 414.5 277 76.2
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 1.7e-113 413.3 301 72.8
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 2.2e-113 412.9 277 76.5
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 2.2e-113 412.9 277 75.8
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 2.9e-113 412.5 277 76.5
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 3.7e-113 412.1 292 72.9
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 8.3e-113 411.0 287 73.5
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 1.4e-112 410.2 277 75.8
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 1.9e-112 409.8 301 70.1
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 4.1e-112 408.7 301 70.8
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 1.6e-111 406.8 296 72.0
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 3.5e-111 405.6 301 71.4
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 3.5e-111 405.6 277 74.7
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 3.9e-110 402.1 318 67.0
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.1e-109 400.6 277 72.6
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.1e-109 400.6 277 73.6
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 9.5e-109 397.5 264 74.6
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 1.4e-107 393.7 277 70.8
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 1.4e-107 393.7 303 68.3
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 1.8e-107 393.3 277 71.5
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 4.0e-107 392.1 250 79.2
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 5.2e-107 391.7 276 73.6
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 2.0e-106 389.8 277 70.4
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 5.8e-106 388.3 277 71.8
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 5.8e-106 388.3 302 69.5
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 9.8e-106 387.5 274 73.7
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 9.8e-106 387.5 292 67.1
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 8.3e-105 384.4 250 76.4
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 3.2e-104 382.5 249 77.5
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 7.1e-104 381.3 276 71.7
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 1.2e-103 380.6 250 76.4
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 3.5e-103 379.0 301 66.1
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 7.8e-103 377.9 301 66.1
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.3e-102 377.1 268 72.0
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 2.3e-102 376.3 276 69.6
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 2.3e-102 376.3 277 69.3
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 3.9e-102 375.6 250 76.4
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 5.1e-102 375.2 278 69.1
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 5.1e-102 375.2 249 76.3
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 5.1e-102 375.2 250 76.4
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 6.6e-102 374.8 276 68.8
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 6.6e-102 374.8 250 75.2
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 8.6e-102 374.4 277 68.6
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 1.9e-101 373.2 309 65.7
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 7.3e-101 371.3 277 68.2
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 2.8e-100 369.4 271 70.8
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 2.8e-100 369.4 301 65.8
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 3.6e-100 369.0 277 68.6
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 4.7e-100 368.6 277 68.6
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 6.2e-100 368.2 250 73.6
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 8.1e-100 367.9 250 73.6
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 8.1e-100 367.9 250 73.2
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 1.4e-99 367.1 277 68.2
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 1.8e-99 366.7 277 67.1
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.8e-99 366.7 274 69.7
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 2.3e-99 366.3 250 73.2
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 2.3e-99 366.3 271 69.0
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 3.1e-99 365.9 327 60.2
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 3.1e-99 365.9 299 64.5
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 4.0e-99 365.5 259 71.8
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.5e-98 363.6 281 64.8
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.0e-98 363.2 277 67.5
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 2.0e-98 363.2 250 72.0
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.2e-97 359.8 250 71.2
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 3.7e-97 359.0 250 71.6
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 4.9e-97 358.6 250 70.8
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 4.9e-97 358.6 277 68.2
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 4.9e-97 358.6 281 63.3
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 8.3e-97 357.8 250 70.8
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 8.3e-97 357.8 240 75.0
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 1.4e-96 357.1 277 66.8
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 1.4e-96 357.1 277 68.2
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 1.2e-95 354.0 327 60.6
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 3.9e-94 349.0 287 64.8
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 6.6e-94 348.2 257 69.6
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 6.6e-94 348.2 276 62.3
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 1.1e-93 347.4 249 70.3
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 9.6e-93 344.4 256 70.3
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 9.6e-93 344.4 283 61.1
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 9.6e-93 344.4 256 68.0
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 1.6e-92 343.6 250 68.0
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 8.1e-92 341.3 226 74.8
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 1.4e-91 340.5 279 60.6
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 1.4e-91 340.5 258 67.8
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.4e-91 340.5 283 63.3
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 2.4e-91 339.7 276 63.4
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 3.1e-91 339.3 249 69.5
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 3.1e-91 339.3 249 69.5
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 4.0e-91 339.0 281 64.8
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 6.8e-91 338.2 205 85.9
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.2e-90 337.4 265 67.5
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 1.2e-90 337.4 226 73.9
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 2.6e-90 336.3 274 60.6
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 2.2e-89 333.2 342 54.7
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 8.4e-89 331.3 277 64.3
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.6e-87 327.0 250 66.0
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 7.8e-87 324.7 248 65.3
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 2.3e-86 323.2 322 57.5
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 6.6e-86 321.6 278 62.9
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 2.5e-85 319.7 253 65.6
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 2.8e-84 316.2 277 61.7
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 4.8e-84 315.5 227 69.6
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 3.1e-83 312.8 250 66.8
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 2.0e-82 310.1 291 54.0
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 2.6e-82 309.7 249 64.7
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 7.6e-82 308.1 300 58.0
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 2.9e-81 306.2 234 65.4
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 4.9e-81 305.4 201 76.1
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.1e-80 304.3 331 55.0
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.4e-80 303.9 295 56.6
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 4.2e-80 302.4 277 58.8
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 7.1e-80 301.6 277 59.2
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 1.2e-79 300.8 277 58.5
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 2.1e-79 300.1 277 58.5
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 2.7e-79 299.7 202 74.3
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 4.6e-79 298.9 234 64.5
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 1.7e-78 297.0 241 58.5
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 1.1e-77 294.3 275 54.2
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 1.5e-74 283.9 317 53.9
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 6.4e-73 278.5 225 63.6
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 1.1e-72 277.7 302 53.3
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 6.0e-71 271.9 248 57.3
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 3.0e-70 269.6 191 70.7
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 3.3e-69 266.2 241 58.9
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 3.3e-69 266.2 241 58.9
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 6.5e-65 251.9 172 73.8
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 8.4e-65 251.5 314 51.3
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 1.1e-64 251.1 223 59.2
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 5.5e-64 248.8 228 57.5
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.8e-59 233.8 207 60.9
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 1.3e-57 227.6 175 66.3
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 8.7e-54 214.9 313 42.2
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 2.5e-48 196.8 153 65.4
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 9.7e-45 184.9 296 39.5
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 2.2e-41 173.7 200 49.5
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 9.7e-37 158.3 135 63.0
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 7.7e-34 148.7 109 66.1
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.1e-31 140.6 94 70.2
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 8.0e-31 138.7 147 51.7
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 1.0e-30 138.3 98 70.4
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 1.1e-29 134.8 166 48.8
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 8.5e-25 118.6 98 57.1
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 2.7e-23 113.6 130 50.0
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 4.7e-23 112.8 119 52.1
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 1.4e-22 111.3 94 55.3
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.3e-22 110.5 84 64.3
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 5.2e-22 109.4 101 53.5
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 1.2e-21 108.2 94 55.3
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 3.4e-21 106.7 73 78.1
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 9.8e-21 105.1 64 81.2
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 2.1e-15 87.4 166 34.9
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 5.2e-14 82.8 124 41.1
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 2.7e-10 70.5 54 55.6
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 2.7e-10 70.5 54 55.6
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 7.7e-10 68.9 96 42.7
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 1.0e-06 58.5 49 51.0


User provided reference genes

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