Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 1.0e-73 280.0 147 100.0
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 7.7e-29 131.0 136 54.4
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 2.0e-24 116.3 152 42.1
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 2.8e-23 112.5 117 52.1
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 2.4e-22 109.4 118 49.2
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 2.4e-22 109.4 110 52.7
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 9.1e-22 107.5 131 47.3
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 1.2e-21 107.1 115 49.6
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.2e-21 107.1 114 49.1
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 1.6e-21 106.7 117 46.2
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 2.7e-21 105.9 114 45.6
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.5e-21 105.5 114 49.1
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 3.5e-21 105.5 110 48.2
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 3.5e-21 105.5 148 46.6
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 4.5e-21 105.1 117 46.2
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 7.7e-21 104.4 114 48.2
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.3e-20 103.6 108 49.1
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 1.3e-20 103.6 99 55.6
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 1.3e-20 103.6 117 45.3
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 2.3e-20 102.8 114 48.2
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 2.9e-20 102.4 114 43.0
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 5.0e-20 101.7 117 43.6
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 5.0e-20 101.7 108 47.2
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 5.0e-20 101.7 114 48.2
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 6.6e-20 101.3 114 46.5
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 1.1e-19 100.5 114 49.1
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 1.5e-19 100.1 117 44.4
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 1.5e-19 100.1 114 48.2
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 2.5e-19 99.4 106 52.8
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 3.3e-19 99.0 136 41.9
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 7.2e-19 97.8 136 41.9
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 9.5e-19 97.4 102 48.0
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 9.5e-19 97.4 114 43.0
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 1.2e-18 97.1 111 43.2
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.2e-18 97.1 142 40.1
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 1.6e-18 96.7 102 47.1
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.6e-18 96.7 110 48.2
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 2.1e-18 96.3 102 49.0
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 2.8e-18 95.9 102 48.0
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 3.6e-18 95.5 102 48.0
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 4.7e-18 95.1 110 46.4
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 4.7e-18 95.1 110 47.3
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 6.1e-18 94.7 115 45.2
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 6.1e-18 94.7 121 43.8
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 8.0e-18 94.4 117 47.0
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 8.0e-18 94.4 137 38.0
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 8.0e-18 94.4 137 38.7
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 1.0e-17 94.0 117 43.6
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 1.4e-17 93.6 121 43.8
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 1.8e-17 93.2 164 36.0
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.8e-17 93.2 110 41.8
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 1.8e-17 93.2 117 42.7
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.3e-17 92.8 107 46.7
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 3.0e-17 92.4 115 44.3
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 3.0e-17 92.4 100 47.0
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 3.0e-17 92.4 114 42.1
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 4.0e-17 92.0 128 43.8
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 5.2e-17 91.7 120 42.5
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 5.2e-17 91.7 106 44.3
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 8.9e-17 90.9 116 41.4
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 8.9e-17 90.9 103 47.6
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 1.2e-16 90.5 109 46.8
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 1.2e-16 90.5 102 46.1
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.2e-16 90.5 102 46.1
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 1.5e-16 90.1 144 39.6
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 1.5e-16 90.1 114 44.7
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 2.0e-16 89.7 102 46.1
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 5.7e-16 88.2 132 37.9
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 7.5e-16 87.8 129 42.6
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 1.3e-15 87.0 120 40.8
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 2.2e-15 86.3 121 41.3
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 2.2e-15 86.3 104 43.3
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 2.8e-15 85.9 102 46.1
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 2.8e-15 85.9 112 42.9
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 6.3e-15 84.7 150 39.3
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 8.3e-15 84.3 110 43.6
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 1.8e-14 83.2 136 35.3
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 1.8e-14 83.2 121 38.8
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 1.8e-14 83.2 102 42.2
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 2.4e-14 82.8 108 41.7
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 3.1e-14 82.4 110 40.0
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 3.1e-14 82.4 126 33.3
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 4.1e-14 82.0 140 37.9
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 5.4e-14 81.6 102 44.1
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 5.4e-14 81.6 102 42.2
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 7.0e-14 81.3 140 37.1
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 1.2e-13 80.5 90 48.9
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 1.2e-13 80.5 119 37.0
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 1.2e-13 80.5 108 39.8
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 1.6e-13 80.1 144 36.8
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 1.6e-13 80.1 142 36.6
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 1.6e-13 80.1 102 40.2
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 1.6e-13 80.1 97 42.3
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 1.6e-13 80.1 142 36.6
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 2.7e-13 79.3 150 36.0
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 3.5e-13 79.0 102 41.2
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 3.5e-13 79.0 142 37.3
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 1.0e-12 77.4 114 36.0
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.3e-12 77.0 116 37.9
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 1.3e-12 77.0 114 36.0
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 1.3e-12 77.0 144 36.8
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 1.3e-12 77.0 113 39.8
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 1.3e-12 77.0 115 37.4
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 6.6e-12 74.7 117 36.8
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 6.6e-12 74.7 117 36.8
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 8.6e-12 74.3 120 34.2
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 1.1e-11 73.9 108 37.0
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 1.5e-11 73.6 119 34.5
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 3.3e-11 72.4 121 37.2
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 4.3e-11 72.0 104 34.6
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 3.6e-10 68.9 97 41.2
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 4.7e-10 68.6 102 39.2
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 4.7e-10 68.6 102 39.2
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 6.8e-09 64.7 97 40.2
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 8.9e-09 64.3 124 30.6
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 1.7e-07 60.1 108 37.0
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 4.1e-06 55.5 118 33.9
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 7.0e-06 54.7 140 34.3
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 9.2e-06 54.3 108 36.1


User provided reference genes

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