Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 3.2e-107 391.7 191 100.0
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 5.4e-75 284.6 193 75.1
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 3.1e-70 268.9 196 73.0
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 5.3e-70 268.1 195 74.4
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 1.7e-68 263.1 195 73.8
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 1.0e-65 253.8 195 69.2
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 1.0e-65 253.8 196 69.9
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 3.0e-65 252.3 196 67.3
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 1.5e-64 250.0 199 67.3
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 7.4e-64 247.7 196 66.3
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 7.4e-64 247.7 198 70.2
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 9.6e-64 247.3 198 66.2
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 1.3e-63 246.9 196 67.3
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 2.8e-63 245.7 195 68.2
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 1.8e-62 243.0 198 66.2
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 2.4e-62 242.7 195 65.6
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 3.1e-62 242.3 196 67.3
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 4.0e-62 241.9 198 67.2
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 4.0e-62 241.9 198 67.2
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 9.0e-62 240.7 196 69.4
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 1.2e-61 240.4 195 63.6
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 7.6e-61 237.7 194 67.0
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 9.9e-61 237.3 201 64.7
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 1.3e-60 236.9 204 64.2
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 1.3e-60 236.9 193 67.4
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 1.7e-60 236.5 199 66.3
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 1.7e-60 236.5 195 66.2
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 6.4e-60 234.6 196 64.8
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 2.4e-59 232.6 204 64.7
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 3.2e-59 232.3 196 66.8
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 3.2e-59 232.3 196 66.8
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 3.2e-59 232.3 196 66.8
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 7.9e-58 227.6 203 63.5
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 7.9e-58 227.6 203 61.6
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 5.1e-57 224.9 195 63.6
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 6.7e-57 224.6 194 66.0
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 1.6e-55 219.9 194 66.0
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 2.8e-55 219.2 199 61.3
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 6.2e-55 218.0 201 63.2
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 8.1e-55 217.6 194 62.4
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.1e-54 217.2 208 60.1
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 5.3e-54 214.9 193 59.1
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 6.9e-54 214.5 196 62.8
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 5.8e-53 211.5 194 62.4
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.2e-52 209.5 196 63.3
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 4.9e-52 208.4 213 58.7
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 6.5e-52 208.0 196 60.2
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 7.1e-51 204.5 195 59.5
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 2.1e-50 203.0 201 59.2
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 4.6e-50 201.8 182 61.5
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.0e-49 200.7 204 58.8
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 1.3e-49 200.3 195 59.5
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 1.3e-49 200.3 197 59.4
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 3.9e-49 198.7 195 59.5
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.5e-48 196.8 195 56.4
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 4.3e-48 195.3 201 58.2
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 1.3e-47 193.7 199 59.3
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 3.7e-47 192.2 205 56.6
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 1.8e-46 189.9 194 58.8
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.8e-46 189.9 199 58.3
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 2.4e-46 189.5 204 56.9
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 5.3e-46 188.3 195 56.4
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 5.3e-46 188.3 195 56.4
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 9.0e-46 187.6 204 55.4
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.5e-45 186.8 195 55.9
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 5.0e-44 181.8 198 55.6
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 5.0e-44 181.8 199 57.8
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 6.5e-44 181.4 197 55.3
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 8.5e-44 181.0 196 55.1
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 1.9e-43 179.9 208 52.9
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 3.2e-43 179.1 198 54.5
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 4.2e-43 178.7 208 58.2
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 9.3e-43 177.6 195 55.4
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 1.2e-42 177.2 134 68.7
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 2.1e-42 176.4 197 53.3
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 2.1e-42 176.4 198 54.0
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.7e-42 176.0 206 57.8
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 3.6e-42 175.6 202 53.5
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 4.6e-42 175.3 200 52.0
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 4.6e-42 175.3 202 52.5
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 6.1e-42 174.9 199 53.3
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 6.1e-42 174.9 198 54.5
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 6.1e-42 174.9 194 57.7
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 7.9e-42 174.5 210 56.2
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 7.9e-42 174.5 194 55.7
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.0e-41 174.1 208 55.3
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 1.3e-41 173.7 194 52.6
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 6.7e-41 171.4 206 53.4
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 5.7e-40 168.3 206 54.4
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 7.4e-40 167.9 195 54.4
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 9.7e-40 167.5 198 52.0
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 9.7e-40 167.5 197 53.3
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 1.6e-39 166.8 222 49.1
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 3.7e-39 165.6 199 51.3
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 8.2e-39 164.5 199 53.3
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 8.2e-39 164.5 209 53.6
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 1.4e-38 163.7 205 53.7
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 2.4e-38 162.9 202 53.0
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 5.3e-38 161.8 207 54.6
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 5.3e-38 161.8 203 54.7
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 6.9e-38 161.4 190 50.5
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 6.9e-38 161.4 200 53.5
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 9.1e-38 161.0 203 51.2
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 1.2e-37 160.6 207 55.1
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 2.0e-37 159.8 210 47.6
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 2.6e-37 159.5 200 53.0
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 2.6e-37 159.5 193 51.8
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 3.4e-37 159.1 207 51.7
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 3.4e-37 159.1 207 51.7
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 5.9e-37 158.3 200 52.5
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 5.9e-37 158.3 200 52.5
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 5.9e-37 158.3 200 52.5
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 1.3e-36 157.1 206 49.0
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 3.8e-36 155.6 198 52.5
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 6.5e-36 154.8 225 50.7
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 6.5e-36 154.8 225 50.7
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 8.5e-36 154.5 198 53.5
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 1.1e-35 154.1 200 50.5
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 1.4e-35 153.7 198 52.0
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 1.9e-35 153.3 202 50.5
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 1.9e-35 153.3 202 50.5
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 3.2e-35 152.5 203 50.2
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 7.2e-35 151.4 229 50.2
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 2.7e-34 149.4 214 50.5
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 3.6e-34 149.1 195 52.3
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 7.9e-34 147.9 230 48.7
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 9.7e-32 141.0 217 49.3
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 1.7e-31 140.2 208 47.6
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 6.3e-31 138.3 197 44.2
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 1.8e-30 136.7 156 56.4
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 9.4e-27 124.4 199 44.2
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 3.0e-25 119.4 193 42.5
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 3.0e-25 119.4 106 61.3
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 2.6e-24 116.3 198 42.9
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 6.3e-23 111.7 94 64.9
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 8.2e-23 111.3 193 38.9
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 1.8e-22 110.2 93 64.5
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 6.5e-20 101.7 210 39.5
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 1.5e-19 100.5 195 37.4
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 7.2e-19 98.2 73 74.0
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 1.4e-17 94.0 68 72.1
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 3.0e-17 92.8 170 38.8
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 6.7e-17 91.7 180 38.3
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 1.2e-13 80.9 188 34.6
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 1.1e-11 74.3 188 31.9
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.5e-11 73.9 44 84.1
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 5.5e-11 72.0 188 33.5
CDE02G1545 Ceratophyllum demersum HOM05D006941 ORTHO05D008361 5.5e-11 72.0 164 36.6
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 2.1e-10 70.1 190 32.6
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 2.6e-08 63.2 197 31.0
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 7.5e-08 61.6 193 28.5
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 2.8e-07 59.7 194 29.9
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 3.7e-07 59.3 197 32.0
Nn4g25860 Nelumbo nucifera HOM05D005099 ORTHO05D006087 8.3e-07 58.2 108 38.9
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.1e-06 57.8 193 33.2
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 1.8e-06 57.0 179 30.2
Oeu019510.1 Olea europaea HOM05D008031 ORTHO05D010063 2.4e-06 56.6 193 32.6
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 3.1e-06 56.2 182 31.9
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 7.0e-06 55.1 193 31.1
Cpa.g.sc25.199 Carica papaya HOM05D008031 ORTHO05D010063 7.0e-06 55.1 192 30.7
PGR102G3014 Punica granatum HOM05D008031 ORTHO05D010063 9.1e-06 54.7 191 29.3


User provided reference genes

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