Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G2425 Cannabis sativa HOM05D006138 ORTHO05D007778 2.7e-228 795.0 419 100.0
CANSAT78G1344 Cannabis sativa HOM05D006138 ORTHO05D007778 4.3e-226 787.7 420 99.3
Cfa014952 Carpinus fangiana HOM05D006138 ORTHO05D007778 3.0e-118 429.5 409 58.7
MD04G1014100 Malus domestica HOM05D006138 ORTHO05D007778 5.1e-118 428.7 406 57.6
Thecc.04G198400 Theobroma cacao HOM05D006138 ORTHO05D007778 3.1e-115 419.5 420 53.8
Dinv27208 Davidia involucrata HOM05D006138 ORTHO05D007778 5.3e-115 418.7 416 55.3
CiPaw.02G065100 Carya illinoinensis HOM05D006138 ORTHO05D007778 2.0e-114 416.8 411 57.2
Cpa.g.sc83.29 Carica papaya HOM05D006138 ORTHO05D007778 5.5e-112 408.7 419 52.5
Gohir.A05G323100 Gossypium hirsutum HOM05D006138 ORTHO05D007778 3.3e-109 399.4 418 52.6
Potri.001G317900 Populus trichocarpa HOM05D006138 ORTHO05D007778 1.1e-107 394.4 429 51.7
Gorai.009G350500 Gossypium raimondii HOM05D006138 ORTHO05D007778 3.1e-107 392.9 418 51.7
TWI53G0419 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 9.0e-107 391.3 417 52.5
TWI09G0334 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 2.0e-106 390.2 412 51.9
Gohir.D05G326000 Gossypium hirsutum HOM05D006138 ORTHO05D007778 5.0e-105 385.6 418 51.2
TAR362G0162 Trochodendron aralioides HOM05D006138 ORTHO05D007778 5.1e-102 375.6 425 48.7
CsaV3_3G010820 Cucumis sativus L. HOM05D006138 ORTHO05D007778 1.1e-101 374.4 417 51.8
Actinidia38756 Actinidia chinensis HOM05D006138 ORTHO05D007778 4.3e-101 372.5 425 50.6
Sed0019269 Sechium edule HOM05D006138 ORTHO05D007778 6.3e-100 368.6 412 50.2
Oeu025031.1 Olea europaea HOM05D006138 ORTHO05D007778 8.2e-100 368.2 415 48.7
Atru.chr4.1604 Acer truncatum HOM05D006138 ORTHO05D007778 1.1e-99 367.9 393 51.9
COL.COLO4_20197 Corchorus olitorius HOM05D006138 ORTHO05D007778 1.1e-99 367.9 415 51.8
Manes.15G055900 Manihot esculenta HOM05D006138 ORTHO05D007778 4.1e-99 365.9 356 55.3
Nn1g07955 Nelumbo nucifera HOM05D006138 ORTHO05D007778 5.9e-98 362.1 413 48.7
GSVIVG01020999001 Vitis vinifera HOM05D006138 ORTHO05D007778 7.7e-98 361.7 419 48.7
AL3G38900 Arabidopsis lyrata HOM05D006138 ORTHO05D007778 2.9e-97 359.8 412 50.2
Carub.0003s2421 Capsella rubella HOM05D006138 ORTHO05D007778 8.5e-97 358.2 408 49.5
Sp3g21610 Schrenkiella parvula HOM05D006138 ORTHO05D007778 1.4e-96 357.5 413 49.6
Lj6A392G25 Lonicera japonica HOM05D006138 ORTHO05D007778 5.5e-96 355.5 455 47.5
vmacro15557 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 3.0e-94 349.7 415 49.6
THA.LOC104804805 Tarenaya hassleriana HOM05D006138 ORTHO05D007778 3.9e-94 349.4 419 47.7
AT3G23910 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 1.5e-93 347.4 411 48.9
Lj6A407G21 Lonicera japonica HOM05D006138 ORTHO05D007778 7.4e-93 345.1 454 46.9
Aa31LG8G10490 Aethionema arabicum HOM05D006138 ORTHO05D007778 1.8e-91 340.5 424 47.2
Sc13g0000300 Simmondsia chinensis HOM05D006138 ORTHO05D007778 1.8e-91 340.5 414 46.4
Cc03_g08330 Coffea canephora HOM05D006138 ORTHO05D007778 2.0e-90 337.0 432 43.8
A07p08490 Brassica napus HOM05D006138 ORTHO05D007778 3.4e-90 336.3 405 48.1
Lj6g0009885 Lotus japonicus HOM05D006138 ORTHO05D007778 3.4e-90 336.3 409 47.4
QL10p052654 Quercus lobata HOM05D006138 ORTHO05D007778 4.5e-90 335.9 554 41.5
Sabra16G0201200 Salix brachista HOM05D006138 ORTHO05D007778 4.5e-90 335.9 534 41.4
ClCG05G003180 Citrullus lanatus HOM05D006138 ORTHO05D007778 1.7e-89 334.0 413 48.4
BcaC06g35587 Brassica carinata HOM05D006138 ORTHO05D007778 5.5e-88 328.9 406 46.8
Rhsim02G0060900 Rhododendron simsii HOM05D006138 ORTHO05D007778 5.5e-88 328.9 573 37.5
C07p13230 Brassica napus HOM05D006138 ORTHO05D007778 9.4e-88 328.2 406 46.8
AT3G24255 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 2.7e-87 326.6 419 47.5
Nitab4.5_0000401g0220 Nicotiana tabacum HOM05D006138 ORTHO05D007778 3.6e-87 326.2 411 45.0
RhsimUnG0035600 Rhododendron simsii HOM05D006138 ORTHO05D007778 4.7e-87 325.9 550 38.7
Glyma.11G255500 Glycine max HOM05D006138 ORTHO05D007778 6.1e-87 325.5 400 46.0
MSTRG.9735 Avicennia marina HOM05D006138 ORTHO05D007778 8.0e-87 325.1 414 47.1
Ca_16395_v3 Cicer arietinum L. HOM05D006138 ORTHO05D007778 1.0e-86 324.7 392 48.0
DCAR_026640 Daucus carota HOM05D006138 ORTHO05D007778 2.3e-86 323.6 394 47.0
Peaxi162Scf00047g00230 Petunia axillaris HOM05D006138 ORTHO05D007778 2.3e-86 323.6 399 46.1
BraA07t28634Z Brassica rapa HOM05D006138 ORTHO05D007778 3.0e-86 323.2 412 46.8
BolC7t41815H Brassica oleracea HOM05D006138 ORTHO05D007778 6.7e-86 322.0 416 45.9
Thhalv10002763m.g Eutrema salsugineum HOM05D006138 ORTHO05D007778 6.7e-86 322.0 350 52.3
BcaB06g26554 Brassica carinata HOM05D006138 ORTHO05D007778 1.7e-84 317.4 407 46.9
arahy.Tifrunner.gnm1.ann1.3M33GA Arachis hypogaea HOM05D006138 ORTHO05D007778 6.3e-84 315.5 405 44.7
arahy.Tifrunner.gnm1.ann1.HYZ2KB Arachis hypogaea HOM05D006138 ORTHO05D007778 5.3e-83 312.4 406 44.6
VMungo1383G1063 Vigna mungo HOM05D000127 ORTHO05D000243 5.3e-83 312.4 396 46.0
Psat5g102360 Pisum sativum HOM05D006138 ORTHO05D007778 3.5e-82 309.7 395 45.8
SalBow8G0822 Salvia bowleyana HOM05D006138 ORTHO05D007778 1.7e-81 307.4 446 42.8
SalBow8G2056 Salvia bowleyana HOM05D006138 ORTHO05D007778 2.2e-81 307.0 446 42.8
PGR004G2157 Punica granatum HOM05D006138 ORTHO05D007778 3.8e-81 306.2 410 44.1
Migut.G00745 Erythranthe guttata HOM05D006138 ORTHO05D007778 5.0e-81 305.8 414 43.5
PSO017G1394 Papaver somniferum HOM05D006138 ORTHO05D007778 1.9e-80 303.9 416 41.8
CAN.G1565.12 Capsicum annuum HOM05D006138 ORTHO05D007778 2.5e-80 303.5 355 47.0
Solyc09g092180.3 Solanum lycopersicum HOM05D006138 ORTHO05D007778 3.2e-80 303.1 404 43.6
Phvul.001G267400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 7.2e-80 302.0 391 45.0
Eucgr.H00039 Eucalyptus grandis HOM05D006138 ORTHO05D007778 9.4e-80 301.6 380 46.1
Sopen09g035050 Solanum pennellii HOM05D006138 ORTHO05D007778 6.1e-79 298.9 404 43.3
Lsat_1_v5_gn_6_60661 Lactuca sativa HOM05D006138 ORTHO05D007778 1.4e-78 297.7 418 42.3
Lalb_Chr23g0278421 Lupinus albus HOM05D006138 ORTHO05D007778 1.4e-78 297.7 352 46.6
Nitab4.5_0003101g0010 Nicotiana tabacum HOM05D006138 ORTHO05D007778 1.8e-78 297.4 408 43.1
SGA_v2.0_scaffold19G08768 Striga asiatica HOM05D006138 ORTHO05D007778 8.8e-78 295.0 419 43.0
PGSC0003DMG400026422 Solanum tuberosum HOM05D006138 ORTHO05D007778 3.3e-77 293.1 362 45.9
vmacro15559 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 3.3e-77 293.1 429 42.9
HanXRQChr07g0185891 Helianthus annuus HOM05D006138 ORTHO05D007778 4.4e-77 292.7 405 42.2
Eucgr.L02926 Eucalyptus grandis HOM05D006138 ORTHO05D007778 1.3e-73 281.2 380 44.5
AUR62020846 Chenopodium quinoa HOM05D006138 ORTHO05D007778 9.4e-72 275.0 382 42.1
CSS0015025 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 1.8e-70 270.8 258 55.8
CSS0014339 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 4.0e-70 269.6 258 55.0
RcHm_v2.0_Chr4g0414021 Rosa chinensis HOM05D006138 ORTHO05D007778 6.3e-68 262.3 291 51.5
PSO063G4547 Papaver somniferum HOM05D006138 ORTHO05D007778 5.4e-67 259.2 379 39.6
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 2.7e-66 256.9 386 40.2
Aqoxy2G04005 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 1.9e-64 250.8 390 41.3
CDE05G2116 Ceratophyllum demersum HOM05D006138 ORTHO05D007778 2.8e-63 246.9 358 42.7
Aqoxy360s001 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 2.3e-62 243.8 351 43.6
FAN22G1553 Fragaria x ananassa HOM05D006138 ORTHO05D007778 8.9e-62 241.9 297 47.8
FAN12G1205 Fragaria x ananassa HOM05D006138 ORTHO05D007778 2.0e-61 240.7 301 48.2
FvH4_4g13460 Fragaria vesca HOM05D006138 ORTHO05D007778 2.6e-61 240.4 304 47.4
Haze_11642 Corylus avellana HOM05D006138 ORTHO05D007778 7.0e-59 232.3 366 43.4
Ah.04g149320 Amaranthus hybridus HOM05D006138 ORTHO05D007778 1.6e-58 231.1 398 36.7
Gohir.A12G078622 Gossypium hirsutum HOM05D006138 ORTHO05D007778 1.0e-57 228.4 276 46.7
AUR62018570 Chenopodium quinoa HOM05D006138 ORTHO05D007778 1.3e-57 228.0 365 39.2
Glyma.18G001700 Glycine max HOM05D006138 ORTHO05D007778 5.0e-57 226.1 231 52.8
HPP92_023190 Vanilla planifolia HOM05D006138 ORTHO05D007778 3.0e-54 216.9 409 35.9
Prupe.1G161100 Prunus persica HOM05D006138 ORTHO05D007778 1.2e-53 214.9 279 45.2
EL10Ac3g07466 Beta vulgaris HOM05D006138 ORTHO05D007778 1.3e-52 211.5 382 35.1
TPR.G24162 Trifolium pratense HOM05D006138 ORTHO05D007778 1.1e-51 208.4 247 47.4
Ciclev10005758m.g Citrus clementina HOM05D006138 ORTHO05D007778 3.9e-49 199.9 169 60.4
Hma1.2p1_0017F.1_g011170 Hydrangea macrophylla HOM05D006138 ORTHO05D007778 5.8e-45 186.0 265 43.4
Os04g0379800 Oryza sativa ssp. japonica HOM05D006138 ORTHO05D007778 5.8e-45 186.0 401 33.9
Gohir.D12G210200 Gossypium hirsutum HOM05D006138 ORTHO05D007778 4.9e-44 183.0 236 46.2
unitig_37.g12032 Utricularia gibba HOM05D006138 ORTHO05D007778 7.0e-43 179.1 363 34.4
MELO3C006299.2 Cucumis melo HOM05D006138 ORTHO05D007778 1.7e-41 174.5 269 43.5
Oeu025032.1 Olea europaea HOM05D006138 ORTHO05D007778 6.8e-38 162.5 164 54.3
Duzib268G1255 Durio zibethinus HOM05D006138 ORTHO05D007778 4.9e-36 156.4 128 60.9
FAN07G2199 Fragaria x ananassa HOM05D006138 ORTHO05D007778 3.5e-34 150.2 287 39.0
Hund24401 Selenicereus undatus HOM05D006138 ORTHO05D007778 4.4e-29 133.3 253 36.4
RcHm_v2.0_Chr4g0414071 Rosa chinensis HOM05D006138 ORTHO05D007778 1.9e-27 127.9 125 57.6
Zm00001eb085830 Zea mays HOM05D006138 ORTHO05D007778 1.1e-24 118.6 411 26.0
Nn1g00061 Nelumbo nucifera HOM05D006138 ORTHO05D007778 1.3e-20 105.1 131 45.8
Nitab4.5_0001652g0120 Nicotiana tabacum HOM05D006138 ORTHO05D007778 1.3e-20 105.1 252 32.9
FAN17G0457 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.2e-18 98.6 158 38.6
Phvul.001G135400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 1.5e-16 91.7 95 49.5
Actinidia16488 Actinidia chinensis HOM05D006138 ORTHO05D007778 3.3e-16 90.5 80 58.8
Duzib268G0147 Durio zibethinus HOM05D006138 ORTHO05D007778 5.6e-16 89.7 107 45.8
Duzib268G0476 Durio zibethinus HOM05D006138 ORTHO05D007778 5.6e-16 89.7 107 45.8
Hund29337 Selenicereus undatus HOM05D006138 ORTHO05D007778 1.4e-14 85.1 112 42.0
Hund29338 Selenicereus undatus HOM05D006138 ORTHO05D007778 1.4e-14 85.1 112 42.0
Mapoly0008s0044 Marchantia polymorpha HOM05D006138 ORTHO05D007778 1.5e-13 81.6 408 23.8
Pp3c4_4010 Physcomitrium patens HOM05D058747 ORTHO05D007778 7.9e-10 69.3 253 24.1
RcHm_v2.0_Chr4g0419401 Rosa chinensis HOM05D006138 ORTHO05D007778 6.9e-06 56.2 96 38.5


User provided reference genes

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