Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 1.0e-52 209.9 113 100.0
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 5.0e-44 181.0 111 87.4
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 6.5e-44 180.6 113 85.8
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 8.5e-44 180.3 113 87.6
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 1.5e-43 179.5 113 86.7
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 1.9e-43 179.1 113 86.7
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 2.5e-43 178.7 113 88.5
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 2.5e-43 178.7 113 85.8
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 2.5e-43 178.7 113 85.0
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 4.2e-43 177.9 113 85.8
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 7.2e-43 177.2 110 87.3
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 7.2e-43 177.2 113 85.0
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 9.4e-43 176.8 113 86.7
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 1.6e-42 176.0 113 85.8
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 2.7e-42 175.3 113 85.0
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 2.7e-42 175.3 113 85.0
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 3.6e-42 174.9 113 84.1
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 3.6e-42 174.9 113 84.1
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 4.7e-42 174.5 113 83.2
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 4.7e-42 174.5 113 84.1
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 4.7e-42 174.5 108 88.9
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 6.1e-42 174.1 110 86.4
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 8.0e-42 173.7 113 85.0
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 1.8e-41 172.6 113 84.1
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 2.3e-41 172.2 113 84.1
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 2.3e-41 172.2 108 87.0
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 3.0e-41 171.8 113 84.1
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 3.0e-41 171.8 113 84.1
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 3.0e-41 171.8 113 85.0
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 4.0e-41 171.4 113 84.1
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 4.0e-41 171.4 113 84.1
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 5.2e-41 171.0 113 85.0
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 6.8e-41 170.6 113 84.1
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 1.5e-40 169.5 113 80.5
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 1.5e-40 169.5 110 85.5
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 1.5e-40 169.5 110 85.5
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 1.5e-40 169.5 108 87.0
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 2.6e-40 168.7 107 84.1
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 3.4e-40 168.3 110 83.6
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 4.4e-40 167.9 109 85.3
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 4.4e-40 167.9 113 80.5
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 5.7e-40 167.5 112 83.9
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 7.5e-40 167.2 107 83.2
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 7.5e-40 167.2 107 83.2
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 9.8e-40 166.8 113 82.3
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 9.8e-40 166.8 113 82.3
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 9.8e-40 166.8 113 82.3
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 1.3e-39 166.4 113 83.2
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 1.7e-39 166.0 135 74.1
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 2.2e-39 165.6 113 83.2
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 2.2e-39 165.6 113 83.2
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 2.2e-39 165.6 113 83.2
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 2.2e-39 165.6 113 81.4
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 2.8e-39 165.2 107 82.2
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 2.8e-39 165.2 113 81.4
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 2.8e-39 165.2 107 83.2
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 3.7e-39 164.9 113 82.3
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 3.7e-39 164.9 113 80.5
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 4.8e-39 164.5 107 82.2
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 4.8e-39 164.5 107 82.2
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 4.8e-39 164.5 107 82.2
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 6.3e-39 164.1 107 82.2
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 6.3e-39 164.1 113 79.6
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 8.3e-39 163.7 113 81.4
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 1.1e-38 163.3 113 81.4
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 1.1e-38 163.3 126 74.6
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 1.1e-38 163.3 110 83.6
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 1.1e-38 163.3 110 83.6
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 1.4e-38 162.9 111 78.4
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 1.8e-38 162.5 113 81.4
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 2.4e-38 162.2 107 80.4
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 5.4e-38 161.0 113 78.8
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 1.6e-37 159.5 99 87.9
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 1.6e-37 159.5 113 78.8
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 1.6e-37 159.5 113 76.1
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 2.7e-37 158.7 111 78.4
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 3.5e-37 158.3 113 79.6
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.7e-36 156.0 113 78.8
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.7e-36 156.0 113 78.8
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 1.7e-36 156.0 113 79.6
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 1.7e-36 156.0 105 81.0
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 2.2e-36 155.6 109 80.7
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 2.2e-36 155.6 113 75.2
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 2.9e-36 155.2 105 79.0
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 2.9e-36 155.2 105 79.0
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 5.0e-36 154.5 106 84.0
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 6.5e-36 154.1 111 78.4
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 8.5e-36 153.7 100 79.0
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 1.1e-35 153.3 100 80.0
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 1.5e-35 152.9 101 81.2
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 1.9e-35 152.5 111 76.6
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 3.2e-35 151.8 111 75.7
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 9.5e-35 150.2 111 75.7
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.2e-34 149.8 101 80.2
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 2.8e-34 148.7 101 76.2
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 3.6e-34 148.3 113 74.3
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 3.6e-34 148.3 113 76.1
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 4.7e-34 147.9 111 74.8
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 4.7e-34 147.9 111 73.9
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 4.7e-34 147.9 106 77.4
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 6.1e-34 147.5 111 73.9
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 1.0e-33 146.7 113 76.1
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 1.8e-33 146.0 111 73.0
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 1.8e-33 146.0 111 73.0
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 1.8e-33 146.0 111 73.0
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 1.8e-33 146.0 111 73.0
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 3.0e-33 145.2 111 73.0
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 4.0e-33 144.8 114 73.7
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 5.2e-33 144.4 111 72.1
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 6.8e-33 144.1 109 71.6
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 8.8e-33 143.7 111 71.2
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 8.8e-33 143.7 111 73.0
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 1.5e-32 142.9 112 73.2
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 1.5e-32 142.9 111 72.1
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 1.5e-32 142.9 109 73.4
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 3.4e-32 141.7 110 73.6
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 3.4e-32 141.7 113 73.5
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 4.4e-32 141.4 101 81.2
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 7.5e-32 140.6 108 70.4
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 1.3e-31 139.8 109 72.5
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.3e-31 139.8 113 72.6
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 3.1e-30 135.2 107 72.9
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 4.1e-30 134.8 100 70.0
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 7.0e-30 134.0 178 50.6
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 2.0e-29 132.5 101 73.3
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 1.5e-27 126.3 101 67.3
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 2.5e-27 125.6 101 71.3
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 3.3e-27 125.2 96 69.8
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 3.6e-26 121.7 109 64.2
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 6.1e-26 120.9 101 65.3
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 2.3e-25 119.0 101 69.3
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 6.4e-23 110.9 86 73.3
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 4.1e-22 108.2 68 85.3
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 2.7e-21 105.5 111 58.6
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 3.1e-17 92.0 59 83.1
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 1.2e-16 90.1 57 80.7
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 6.4e-15 84.3 59 76.3
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.1e-14 83.6 50 88.0
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 1.9e-14 82.8 62 74.2
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 2.4e-14 82.4 94 55.3
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 5.4e-14 81.3 111 47.7
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 6.6e-12 74.3 63 68.3
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 5.6e-11 71.2 62 64.5
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 3.6e-10 68.6 53 73.6
Cre01.g041000 Chlamydomonas reinhardtii HOM05D005046 ORTHO05D006194 4.9e-07 58.2 79 41.8


User provided reference genes

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