Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 3.4e-145 518.5 295 100.0
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 4.9e-59 232.3 299 53.2
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 6.4e-59 231.9 299 52.5
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 7.1e-58 228.4 304 51.6
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 7.1e-58 228.4 305 50.2
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 1.6e-57 227.3 305 51.1
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 1.9e-55 220.3 296 49.0
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 2.5e-55 219.9 293 48.5
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 9.6e-55 218.0 308 49.7
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 8.2e-54 214.9 296 47.6
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 2.4e-53 213.4 286 48.3
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 1.2e-52 211.1 199 63.8
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 3.4e-52 209.5 291 49.5
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 4.5e-52 209.1 287 54.7
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 7.6e-52 208.4 291 47.4
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 7.6e-52 208.4 291 47.1
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 1.7e-51 207.2 295 48.1
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 2.2e-51 206.8 285 48.8
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 2.1e-49 200.3 303 44.9
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 2.1e-49 200.3 299 53.5
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 4.6e-49 199.1 254 51.6
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 2.3e-48 196.8 273 47.6
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 8.7e-48 194.9 295 45.8
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 2.5e-47 193.4 296 46.3
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 3.3e-47 193.0 305 45.6
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 7.4e-47 191.8 301 44.5
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 1.4e-45 187.6 286 47.6
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 5.3e-45 185.7 286 43.7
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 2.0e-44 183.7 296 44.3
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 1.7e-43 180.6 280 41.8
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 2.9e-43 179.9 177 54.8
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 6.5e-43 178.7 278 44.2
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 8.5e-43 178.3 303 43.6
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 1.4e-42 177.6 304 44.7
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 2.5e-42 176.8 260 43.1
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 7.2e-42 175.3 190 50.0
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 7.2e-42 175.3 200 62.5
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 2.7e-41 173.3 180 56.1
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 3.6e-41 172.9 277 42.6
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 6.1e-41 172.2 257 49.8
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 2.3e-40 170.2 277 42.2
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 3.9e-40 169.5 279 43.4
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 7.4e-39 165.2 307 41.0
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 3.1e-37 159.8 298 40.6
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 2.6e-36 156.8 295 40.3
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 5.9e-36 155.6 260 41.5
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 1.3e-35 154.5 285 39.6
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 2.5e-34 150.2 195 54.9
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.6e-33 147.5 313 38.3
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 2.1e-33 147.1 269 39.8
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 4.7e-33 146.0 350 40.3
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 4.7e-33 146.0 304 38.5
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 6.1e-33 145.6 307 43.3
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 6.7e-32 142.1 280 38.6
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 1.1e-31 141.4 263 47.1
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 1.1e-31 141.4 255 36.9
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 1.5e-31 141.0 269 38.7
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 3.7e-30 136.3 283 37.8
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 4.8e-30 136.0 258 39.5
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 4.8e-30 136.0 258 39.5
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 8.2e-30 135.2 260 45.8
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 8.2e-30 135.2 221 39.8
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 3.1e-29 133.3 263 40.7
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 4.1e-29 132.9 256 36.7
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 5.3e-29 132.5 196 45.9
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 5.3e-29 132.5 280 35.0
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 7.0e-29 132.1 213 39.9
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 9.1e-29 131.7 337 34.1
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 2.6e-28 130.2 291 35.7
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 3.5e-28 129.8 225 44.4
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 4.5e-28 129.4 257 41.6
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.7e-27 127.5 264 35.6
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 5.0e-27 125.9 284 34.2
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 8.5e-27 125.2 258 43.4
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 1.9e-26 124.0 293 35.2
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 3.2e-26 123.2 283 34.3
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 3.2e-26 123.2 283 34.3
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 4.2e-26 122.9 293 34.8
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 9.4e-26 121.7 289 33.9
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 9.4e-26 121.7 189 40.7
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 2.1e-25 120.6 256 41.8
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 2.7e-25 120.2 300 33.3
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 4.7e-25 119.4 263 34.6
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 4.7e-25 119.4 279 33.3
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 6.1e-25 119.0 283 33.9
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 8.0e-25 118.6 290 34.1
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 2.3e-24 117.1 283 36.0
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 5.2e-24 115.9 195 49.7
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 5.2e-24 115.9 297 35.4
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 6.7e-24 115.5 208 35.6
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 6.7e-24 115.5 177 40.1
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 8.8e-24 115.2 260 36.2
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 2.6e-23 113.6 270 34.8
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 5.7e-23 112.5 301 37.2
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 7.4e-23 112.1 302 35.4
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 1.4e-21 107.8 183 36.6
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 3.1e-21 106.7 180 42.2
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 4.5e-20 102.8 182 38.5
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 5.9e-20 102.4 311 31.8
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 1.0e-19 101.7 271 35.4
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 2.2e-19 100.5 225 33.8
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 1.1e-18 98.2 321 29.6
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 1.9e-18 97.4 150 43.3
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 1.9e-18 97.4 252 32.5
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 1.9e-18 97.4 228 37.7
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 1.9e-18 97.4 295 35.3
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 9.4e-18 95.1 158 43.0
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 1.2e-17 94.7 158 43.0
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 1.6e-17 94.4 279 31.2
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 3.6e-17 93.2 195 35.9
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 1.0e-16 91.7 145 38.6
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.4e-16 91.3 192 47.4
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 1.8e-16 90.9 182 34.6
Medtr4g088590 Medicago truncatula HOM05D004244 ORTHO05D004964 3.0e-16 90.1 54 75.9
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 4.0e-16 89.7 178 34.8
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 5.2e-16 89.4 259 30.5
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 5.2e-16 89.4 156 39.1
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 1.5e-15 87.8 186 33.9
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 2.0e-15 87.4 180 34.4
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 2.6e-15 87.0 190 34.7
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 9.7e-15 85.1 229 31.0
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 9.7e-15 85.1 188 32.4
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 1.3e-14 84.7 192 33.9
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 2.8e-14 83.6 196 33.7
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 6.3e-14 82.4 227 30.8
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 8.3e-14 82.0 272 29.8
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 1.1e-13 81.6 174 37.9
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 1.4e-13 81.3 188 40.4
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 1.8e-13 80.9 188 31.4
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 4.1e-13 79.7 183 32.8
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 4.1e-13 79.7 145 49.0
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 2.7e-12 77.0 174 36.2
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 5.9e-12 75.9 247 30.0
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 5.9e-12 75.9 222 30.2
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 1.0e-11 75.1 189 31.7
Os01g0680600 Oryza sativa ssp. japonica HOM05D004244 ORTHO05D004964 1.0e-11 75.1 220 36.4
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 2.9e-11 73.6 183 31.7
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 2.9e-11 73.6 168 41.7
RcHm_v2.0_Chr4g0396101 Rosa chinensis HOM05D004244 ORTHO05D004964 2.9e-11 73.6 157 44.6
SalBow1G6706 Salvia bowleyana HOM05D004244 ORTHO05D004964 6.5e-11 72.4 140 35.7
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 8.5e-11 72.0 211 29.9
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 8.5e-11 72.0 277 27.8
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 8.5e-11 72.0 218 29.8
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 1.1e-10 71.6 278 28.4
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 1.1e-10 71.6 278 28.4
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 1.9e-10 70.9 265 29.1
unitig_26.g9547 Utricularia gibba HOM05D004244 ORTHO05D004964 1.9e-10 70.9 204 30.4
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 3.2e-10 70.1 278 28.1
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 4.2e-10 69.7 260 27.7
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 4.2e-10 69.7 284 28.9
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 5.5e-10 69.3 182 30.8
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 5.5e-10 69.3 278 28.8
A04p25560 Brassica napus HOM05D004244 ORTHO05D004964 5.5e-10 69.3 187 32.1
Zm00001eb360230 Zea mays HOM05D004244 ORTHO05D004964 9.4e-10 68.6 267 27.7
Zm00001eb156930 Zea mays HOM05D004244 ORTHO05D004964 3.6e-09 66.6 303 27.1
Ah.06g187950 Amaranthus hybridus HOM05D004244 ORTHO05D004964 2.3e-08 63.9 137 35.0
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 3.0e-08 63.5 165 32.7


User provided reference genes

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