Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 4.1e-125 451.4 232 100.0
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 5.8e-79 298.1 232 70.3
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 7.5e-79 297.7 215 71.6
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 2.2e-78 296.2 184 79.3
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 2.9e-78 295.8 216 71.3
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 8.3e-78 294.3 184 80.4
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 8.3e-78 294.3 211 71.6
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 2.4e-77 292.7 164 89.0
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 4.1e-77 292.0 184 79.3
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 9.2e-77 290.8 215 73.5
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 3.5e-76 288.9 218 70.6
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 3.5e-76 288.9 201 75.6
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 4.6e-76 288.5 201 74.6
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 4.6e-76 288.5 227 70.0
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 4.6e-76 288.5 184 80.4
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.0e-75 287.3 224 68.8
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.0e-75 285.8 185 78.4
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.0e-75 285.8 185 78.4
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 3.0e-75 285.8 185 78.4
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 3.0e-75 285.8 226 67.7
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 3.0e-75 285.8 187 77.5
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 6.6e-75 284.6 215 70.7
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 6.6e-75 284.6 201 74.1
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.9e-74 283.1 185 77.8
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.9e-74 283.1 185 77.8
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.5e-74 282.7 182 79.1
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 2.5e-74 282.7 169 84.0
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 3.3e-74 282.3 234 65.8
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 4.3e-74 282.0 239 65.3
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 5.6e-74 281.6 222 65.8
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.6e-74 281.6 235 67.7
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.6e-74 281.6 235 67.7
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 9.5e-74 280.8 224 65.6
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 1.6e-73 280.0 185 74.6
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 2.1e-73 279.6 224 65.6
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 2.8e-73 279.3 219 69.4
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 2.8e-73 279.3 185 74.1
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 2.8e-73 279.3 185 74.1
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 2.8e-73 279.3 188 73.4
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 2.8e-73 279.3 224 68.3
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 3.6e-73 278.9 225 68.0
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 3.6e-73 278.9 189 77.2
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 6.2e-73 278.1 170 80.6
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 6.2e-73 278.1 187 76.5
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 8.1e-73 277.7 210 68.6
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 8.1e-73 277.7 220 67.3
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 1.1e-72 277.3 210 68.1
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 1.1e-72 277.3 187 73.8
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 1.4e-72 276.9 222 66.7
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 1.4e-72 276.9 226 70.4
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 2.3e-72 276.2 168 83.9
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 4.0e-72 275.4 169 79.9
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 4.0e-72 275.4 222 68.0
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 5.2e-72 275.0 226 65.0
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 5.2e-72 275.0 222 66.2
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 5.2e-72 275.0 159 85.5
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 6.8e-72 274.6 218 68.8
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 8.9e-72 274.2 226 67.3
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 8.9e-72 274.2 226 67.3
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.2e-71 273.9 217 69.6
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.5e-71 273.5 184 74.5
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 4.4e-71 271.9 205 70.2
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 5.8e-71 271.6 186 73.7
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 5.8e-71 271.6 187 72.7
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 5.8e-71 271.6 186 73.7
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 9.9e-71 270.8 233 65.2
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 9.9e-71 270.8 158 81.6
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 1.3e-70 270.4 186 73.1
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 1.7e-70 270.0 200 67.5
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 2.9e-70 269.2 211 68.7
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 2.9e-70 269.2 226 65.5
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 4.9e-70 268.5 188 74.5
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 4.9e-70 268.5 184 75.0
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 8.3e-70 267.7 191 73.3
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 1.1e-69 267.3 191 72.3
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 1.9e-69 266.5 201 68.7
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.4e-69 266.2 196 69.4
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 2.4e-69 266.2 157 84.1
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 1.2e-68 263.8 222 64.4
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 1.0e-67 260.8 207 64.3
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 1.0e-67 260.8 189 71.4
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 1.7e-67 260.0 198 69.2
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 3.0e-67 259.2 246 59.8
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 3.0e-67 259.2 177 71.8
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 5.1e-67 258.5 221 68.3
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 6.6e-67 258.1 211 64.0
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 8.6e-67 257.7 191 69.1
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 8.6e-67 257.7 196 66.8
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 8.6e-67 257.7 203 69.0
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 1.1e-66 257.3 157 81.5
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 1.1e-66 257.3 212 64.2
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 1.5e-66 256.9 191 69.1
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 1.9e-66 256.5 212 63.2
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 2.5e-66 256.1 207 64.7
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 3.3e-66 255.8 227 63.4
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.3e-66 255.8 197 70.6
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 3.3e-66 255.8 183 70.5
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.3e-66 255.4 214 65.9
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 5.6e-66 255.0 183 69.9
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 9.5e-66 254.2 196 69.4
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 1.2e-65 253.8 215 64.2
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 1.2e-65 253.8 146 85.6
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 2.1e-65 253.1 196 68.9
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 2.1e-65 253.1 196 68.9
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 2.8e-65 252.7 196 66.3
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 3.6e-65 252.3 140 87.9
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 8.1e-65 251.1 155 81.3
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 1.4e-64 250.4 175 70.3
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 2.4e-64 249.6 233 59.2
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 5.2e-64 248.4 207 64.7
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 1.5e-63 246.9 141 84.4
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 2.6e-63 246.1 251 60.2
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 4.4e-63 245.4 232 58.6
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 5.8e-63 245.0 157 75.8
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 4.9e-62 241.9 203 63.5
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 8.4e-62 241.1 156 76.3
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 8.4e-62 241.1 164 73.2
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 4.1e-61 238.8 234 58.1
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 1.7e-59 233.4 162 71.6
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 1.7e-59 233.4 140 82.1
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 3.9e-59 232.3 168 73.2
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.9e-59 232.3 155 74.2
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.5e-58 230.3 133 85.0
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.6e-57 226.9 178 61.8
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 1.8e-56 223.4 193 60.1
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 3.1e-56 222.6 132 82.6
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 6.9e-56 221.5 137 75.2
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 6.9e-56 221.5 158 67.7
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 9.0e-56 221.1 127 83.5
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 2.6e-55 219.5 127 82.7
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 4.9e-54 215.3 162 64.2
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 1.4e-53 213.8 140 75.7
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.4e-48 196.4 134 70.9
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 9.0e-48 194.5 149 69.8
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 2.0e-47 193.4 155 66.5
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 1.7e-46 190.3 159 64.8
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 1.1e-45 187.6 140 70.0
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 1.4e-45 187.2 145 61.4
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 1.9e-45 186.8 141 59.6
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.9e-45 186.8 186 55.9
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 2.3e-43 179.9 171 60.2
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 3.0e-43 179.5 105 83.8
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 1.9e-42 176.8 97 82.5
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 4.0e-40 169.1 97 82.5
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 8.4e-38 161.4 148 55.4
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.2e-36 157.5 140 60.7
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 9.6e-34 147.9 76 94.7
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.8e-33 146.4 156 46.8
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 5.3e-32 142.1 110 67.3
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.5e-31 140.6 194 50.0
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 7.6e-31 138.3 77 85.7
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 1.7e-30 137.1 74 85.1
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 8.4e-30 134.8 229 45.4
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.5e-29 132.1 194 49.0
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 3.0e-27 126.3 86 74.4
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 3.7e-25 119.4 80 75.0
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 1.5e-23 114.0 94 59.6
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 2.5e-21 106.7 92 56.5
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 9.4e-21 104.8 118 46.6
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 6.1e-20 102.1 122 50.0
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 3.7e-17 92.8 70 64.3
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 1.4e-16 90.9 46 89.1
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 2.9e-14 83.2 52 76.9
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 2.9e-14 83.2 42 90.5
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 3.8e-14 82.8 42 88.1
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 1.2e-12 77.8 125 44.8
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 6.1e-12 75.5 130 42.3
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 3.3e-10 69.7 37 83.8
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 1.8e-08 63.9 171 28.7
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 3.1e-08 63.2 33 90.9
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 3.4e-07 59.7 69 53.6
Cc00_g07230 Coffea canephora HOM05D004281 ORTHO05D004839 5.0e-06 55.8 39 76.9
Cc00_g07240 Coffea canephora HOM05D004281 ORTHO05D004839 5.0e-06 55.8 39 76.9


User provided reference genes

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