Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G2290 Cannabis sativa HOM05D002758 ORTHO05D002885 6.9e-51 203.8 109 100.0
CANSAT56G1388 Cannabis sativa HOM05D002758 ORTHO05D002885 3.7e-44 181.4 109 93.6
Atru.chr1.2990 Acer truncatum HOM05D002758 ORTHO05D002885 1.6e-15 86.3 105 56.2
QL05p029455 Quercus lobata HOM05D002758 ORTHO05D002885 3.4e-13 78.6 106 50.0
CiPaw.01G246400 Carya illinoinensis HOM05D002758 ORTHO05D002885 3.7e-12 75.1 107 46.7
GSVIVG01017318001 Vitis vinifera HOM05D002758 ORTHO05D002885 3.7e-12 75.1 111 53.2
Dinv30594 Davidia involucrata HOM05D002758 ORTHO05D002885 5.4e-11 71.2 109 50.5
Prupe.3G084900 Prunus persica HOM05D002758 ORTHO05D002885 5.4e-11 71.2 108 55.6
Ciclev10026775m.g Citrus clementina HOM05D002758 ORTHO05D002885 7.0e-11 70.9 98 49.0
Gohir.A10G074300 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.2e-10 70.1 106 48.1
Manes.11G055700 Manihot esculenta HOM05D002758 ORTHO05D002885 1.2e-10 70.1 102 47.1
BcaC08g43430 Brassica carinata HOM05D002758 ORTHO05D002885 1.6e-10 69.7 94 54.3
CSS0041896 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 1.0e-09 67.0 108 44.4
BcaC08g43429 Brassica carinata HOM05D002758 ORTHO05D002885 1.3e-09 66.6 89 53.9
BolC6t35882H Brassica oleracea HOM05D002758 ORTHO05D002885 1.3e-09 66.6 89 53.9
Thecc.06G021700 Theobroma cacao HOM05D002758 ORTHO05D002885 1.3e-09 66.6 106 48.1
Duzib235G1225 Durio zibethinus HOM05D002758 ORTHO05D002885 1.7e-09 66.2 114 46.5
Gohir.D10G077100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.3e-09 65.9 106 46.2
CiPaw.02G156300 Carya illinoinensis HOM05D002758 ORTHO05D002885 3.0e-09 65.5 104 49.0
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 3.0e-09 65.5 83 53.0
CARHR042690 Cardamine hirsuta HOM05D002758 ORTHO05D002885 3.9e-09 65.1 107 46.7
Potri.001G192800 Populus trichocarpa HOM05D002758 ORTHO05D002885 3.9e-09 65.1 118 47.5
FvH4_1g03160 Fragaria vesca HOM05D002758 ORTHO05D002885 5.0e-09 64.7 83 53.0
FAN23G2585 Fragaria x ananassa HOM05D002758 ORTHO05D002885 5.0e-09 64.7 83 53.0
PGR031G0668 Punica granatum HOM05D002758 ORTHO05D002885 6.6e-09 64.3 105 49.5
RcHm_v2.0_Chr2g0088291 Rosa chinensis HOM05D002758 ORTHO05D002885 8.6e-09 63.9 83 53.0
vmacro18989 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 8.6e-09 63.9 108 42.6
BcaC09g48555 Brassica carinata HOM05D002758 ORTHO05D002885 1.1e-08 63.5 107 47.7
C01p48670 Brassica napus HOM05D002758 ORTHO05D002885 1.1e-08 63.5 107 47.7
BolC1t04821H Brassica oleracea HOM05D002758 ORTHO05D002885 1.1e-08 63.5 107 47.7
Gorai.011G083300 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.1e-08 63.5 106 46.2
Cfa001976 Carpinus fangiana HOM05D002758 ORTHO05D002885 1.5e-08 63.2 108 43.5
Gohir.A05G125833 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.5e-08 63.2 108 47.2
Gohir.A05G125900 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.5e-08 63.2 108 47.2
Gohir.D05G126800 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.5e-08 63.2 108 47.2
Gorai.009G130900 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.5e-08 63.2 103 48.5
A05p18910 Brassica napus HOM05D002758 ORTHO05D002885 1.9e-08 62.8 87 52.9
FAN19G2709 Fragaria x ananassa HOM05D002758 ORTHO05D002885 2.5e-08 62.4 83 51.8
Sabra06G0051500 Salix brachista HOM05D002758 ORTHO05D002885 3.3e-08 62.0 94 43.6
Sp1g39120 Schrenkiella parvula HOM05D002758 ORTHO05D002885 3.3e-08 62.0 87 51.7
BcaC08g44003 Brassica carinata HOM05D002758 ORTHO05D002885 5.6e-08 61.2 87 51.7
Sed0016169 Sechium edule HOM05D002758 ORTHO05D002885 5.6e-08 61.2 118 43.2
Actinidia15774 Actinidia chinensis HOM05D002758 ORTHO05D002885 7.3e-08 60.8 105 45.7
FAN26G2290 Fragaria x ananassa HOM05D002758 ORTHO05D002885 7.3e-08 60.8 83 50.6
Sopen03g035550 Solanum pennellii HOM05D002758 ORTHO05D002885 7.3e-08 60.8 107 41.1
BraA06t23394Z Brassica rapa HOM05D002758 ORTHO05D002885 9.5e-08 60.5 92 51.1
Glyma.08G211800 Glycine max HOM05D002758 ORTHO05D002885 9.5e-08 60.5 108 48.1
Nitab4.5_0001764g0140 Nicotiana tabacum HOM05D002758 ORTHO05D002885 9.5e-08 60.5 106 40.6
Nitab4.5_0005728g0010 Nicotiana tabacum HOM05D002758 ORTHO05D002885 9.5e-08 60.5 110 40.9
Actinidia01753 Actinidia chinensis HOM05D002758 ORTHO05D002885 1.2e-07 60.1 106 44.3
A06p01750 Brassica napus HOM05D002758 ORTHO05D002885 1.6e-07 59.7 88 52.3
Gohir.A07G036200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.6e-07 59.7 84 50.0
Thhalv10011857m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 2.1e-07 59.3 87 50.6
TWI18G1221 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 2.1e-07 59.3 110 40.9
Sed0015979 Sechium edule HOM05D002758 ORTHO05D002885 2.8e-07 58.9 106 42.5
COL.COLO4_12950 Corchorus olitorius HOM05D002758 ORTHO05D002885 3.6e-07 58.5 113 45.1
Duzib187G0530 Durio zibethinus HOM05D002758 ORTHO05D002885 3.6e-07 58.5 98 45.9
Aa31LG10G2440 Aethionema arabicum HOM05D002758 ORTHO05D002885 4.7e-07 58.2 118 42.4
MD17G1209300 Malus domestica HOM05D002758 ORTHO05D002885 4.7e-07 58.2 104 50.0
Nn8g39466 Nelumbo nucifera HOM05D002758 ORTHO05D002885 4.7e-07 58.2 107 43.0
Manes.04G113800 Manihot esculenta HOM05D002758 ORTHO05D002885 6.2e-07 57.8 117 41.9
THA.LOC104815531 Tarenaya hassleriana HOM05D002758 ORTHO05D002885 6.2e-07 57.8 105 44.8
AL1G60820 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 1.1e-06 57.0 108 44.4
Psat5g302120 Pisum sativum HOM05D002758 ORTHO05D002885 1.1e-06 57.0 109 41.3
PGSC0003DMG400000615 Solanum tuberosum HOM05D002758 ORTHO05D002885 1.1e-06 57.0 107 42.1
SGA_v2.0_scaffold5G02683 Striga asiatica HOM05D002758 ORTHO05D002885 1.1e-06 57.0 115 41.7
MSTRG.11135 Avicennia marina HOM05D002758 ORTHO05D002885 1.8e-06 56.2 95 43.2
BraA05t20788Z Brassica rapa HOM05D002758 ORTHO05D002885 1.8e-06 56.2 107 43.9
QL09p026717 Quercus lobata HOM05D002758 ORTHO05D002885 1.8e-06 56.2 103 45.6
C06p14110 Brassica napus HOM05D002758 ORTHO05D002885 2.3e-06 55.8 87 49.4
BolC6t36589H Brassica oleracea HOM05D002758 ORTHO05D002885 2.3e-06 55.8 87 49.4
Carub.0003s1550 Capsella rubella HOM05D002758 ORTHO05D002885 2.3e-06 55.8 94 45.7
Medtr4g010530 Medicago truncatula HOM05D002758 ORTHO05D002885 2.3e-06 55.8 103 46.6
AT3G15760 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 3.1e-06 55.5 94 45.7
Duzib150G0461 Durio zibethinus HOM05D002758 ORTHO05D002885 4.0e-06 55.1 88 46.6
Duzib160G0702 Durio zibethinus HOM05D002758 ORTHO05D002885 4.0e-06 55.1 103 46.6
Potri.006G069100 Populus trichocarpa HOM05D002758 ORTHO05D002885 4.0e-06 55.1 94 42.6
Potri.018G131100 Populus trichocarpa HOM05D002758 ORTHO05D002885 4.0e-06 55.1 92 43.5
Nitab4.5_0000373g0020 Nicotiana tabacum HOM05D002758 ORTHO05D002885 5.2e-06 54.7 105 41.0
CARHR090850 Cardamine hirsuta HOM05D002758 ORTHO05D002885 6.8e-06 54.3 89 46.1
ClCG07G012650 Citrullus lanatus HOM05D002758 ORTHO05D002885 6.8e-06 54.3 114 43.0
AL3G28420 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 8.9e-06 53.9 89 43.8
EL10Ac8g18667 Beta vulgaris HOM05D002758 ORTHO05D002885 8.9e-06 53.9 108 41.7
CANSAT11G2365 Cannabis sativa HOM05D002758 ORTHO05D002885 8.9e-06 53.9 100 41.0
FAN02G3379 Fragaria x ananassa HOM05D002758 ORTHO05D002885 8.9e-06 53.9 102 45.1


User provided reference genes

Program Settings