Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 5.0e-294 1013.8 559 100.0
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 1.8e-256 889.0 561 82.5
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 1.6e-255 885.9 561 82.5
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 3.8e-254 881.3 562 82.0
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 6.5e-254 880.6 561 86.6
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 1.1e-253 879.8 561 81.8
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 9.5e-253 876.7 561 81.1
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 2.8e-252 875.2 561 81.1
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 6.3e-249 864.0 562 79.4
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 6.3e-249 864.0 562 80.8
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 2.4e-248 862.1 560 80.0
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 7.0e-248 860.5 561 80.2
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 1.2e-247 859.8 600 76.5
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 2.9e-246 855.1 561 79.5
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 3.8e-246 854.7 561 79.3
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 3.8e-246 854.7 561 79.3
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 5.0e-246 854.4 560 79.8
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 6.6e-246 854.0 560 79.5
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 3.3e-245 851.7 562 78.5
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 5.6e-245 850.9 560 78.9
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.2e-244 849.7 560 79.1
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 2.1e-244 849.0 626 73.6
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 2.8e-244 848.6 562 77.6
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 1.4e-243 846.3 561 81.5
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 1.8e-243 845.9 560 78.8
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 6.8e-243 844.0 561 78.3
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.5e-242 842.8 565 79.3
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 3.4e-242 841.6 561 79.3
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 1.7e-241 839.3 561 79.3
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 2.2e-241 839.0 557 79.5
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 2.9e-241 838.6 562 77.9
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 2.9e-241 838.6 563 78.2
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 9.2e-240 833.6 561 78.4
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.6e-239 832.8 560 79.1
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 2.0e-239 832.4 561 77.7
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 1.0e-238 830.1 561 76.8
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 3.9e-238 828.2 562 77.2
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 4.3e-237 824.7 560 77.5
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 5.6e-237 824.3 561 77.2
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 5.6e-237 824.3 561 77.2
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 9.5e-237 823.5 562 75.8
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 4.4e-234 814.7 561 76.1
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 9.8e-234 813.5 546 79.5
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 1.7e-233 812.8 557 77.0
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 1.9e-232 809.3 574 74.9
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 3.2e-232 808.5 560 75.4
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 2.7e-231 805.4 542 76.8
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 3.5e-231 805.1 562 75.1
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 1.3e-230 803.1 562 73.8
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 3.9e-230 801.6 513 81.1
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 2.5e-229 798.9 612 71.4
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 2.8e-228 795.4 561 79.3
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 4.7e-228 794.7 560 74.5
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 1.4e-227 793.1 562 73.5
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 8.9e-227 790.4 561 74.5
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 1.5e-226 789.6 562 74.9
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 4.1e-224 781.6 561 72.9
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 1.2e-223 780.0 515 77.9
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 1.3e-222 776.5 542 75.3
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 1.5e-221 773.1 536 74.3
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 7.3e-221 770.8 560 72.5
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 4.7e-220 768.1 648 66.5
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 1.1e-219 766.9 575 75.5
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 1.4e-219 766.5 560 71.1
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 5.8e-218 761.1 561 71.5
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 2.7e-215 752.3 565 71.2
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 3.5e-215 751.9 560 71.6
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 7.8e-215 750.7 560 71.2
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 3.0e-214 748.8 560 70.7
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 1.1e-213 746.9 560 70.0
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 5.6e-213 744.6 561 70.1
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 5.6e-213 744.6 561 70.1
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 2.1e-212 742.7 576 69.8
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 3.6e-212 741.9 511 75.3
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 1.1e-211 740.3 561 69.5
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 3.1e-211 738.8 514 75.7
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 5.2e-211 738.0 566 69.1
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 2.2e-209 732.6 570 68.2
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 2.9e-209 732.3 542 70.8
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 2.4e-208 729.2 570 68.2
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 3.2e-208 728.8 562 67.3
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 5.4e-208 728.0 559 70.1
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 5.4e-208 728.0 571 68.1
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 5.4e-208 728.0 561 68.6
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 4.6e-207 724.9 562 67.3
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 3.0e-206 722.2 531 71.9
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 6.2e-204 714.5 562 65.8
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 3.5e-199 698.7 531 69.3
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 1.8e-198 696.4 564 69.0
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 4.2e-192 675.2 471 74.7
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.5e-189 666.8 393 87.3
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 2.5e-176 622.9 432 72.0
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 3.3e-173 612.5 433 71.8
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 4.8e-164 582.0 553 59.7
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 3.1e-163 579.3 562 55.2
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 7.7e-162 574.7 563 55.6
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 3.1e-155 552.7 569 52.7
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 7.2e-152 541.6 563 52.8
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 2.7e-151 539.7 382 74.1
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 1.5e-149 533.9 339 82.0
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 1.7e-145 520.4 566 49.5
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 6.8e-142 508.4 306 87.6
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 7.0e-131 471.9 349 70.5
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 2.7e-130 469.9 522 54.6
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 3.9e-113 412.9 340 62.9
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 9.5e-112 408.3 356 57.6
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 2.9e-92 343.6 260 67.3
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 1.4e-78 298.1 541 36.6
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 6.0e-74 282.7 208 73.6
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 9.3e-67 258.8 144 85.4
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 8.2e-63 245.7 200 68.5
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.0e-60 238.8 180 62.2
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 5.7e-56 223.0 198 60.6
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.4e-54 217.6 130 83.8
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 1.1e-35 155.6 159 57.2
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 1.0e-33 149.1 180 50.0
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 1.5e-32 145.2 90 73.3
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.6e-32 144.4 90 81.1
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 3.4e-32 144.1 178 48.9
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 4.8e-31 140.2 158 52.5
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 4.8e-31 140.2 158 52.5
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 4.2e-27 127.1 167 47.9
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 3.4e-24 117.5 77 72.7
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.7e-23 114.0 128 50.0
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 5.9e-21 106.7 58 89.7
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 7.2e-19 99.8 129 45.7
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.6e-18 98.6 90 63.3
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 3.6e-18 97.4 87 63.2
MBI01_g40850_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 4.3e-11 73.9 254 26.0
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 4.3e-11 73.9 74 54.1
MBI01_g33693_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 1.0e-09 69.3 182 27.5
Medtr1g103750 Medicago truncatula HOM05D004454 ORTHO05D005462 2.3e-09 68.2 226 24.3
Phvul.007G021500 Phaseolus vulgaris HOM05D004454 ORTHO05D005462 2.0e-08 65.1 160 25.6
Glyma.11G026400 Glycine max HOM05D004454 ORTHO05D005462 2.6e-08 64.7 162 25.3
Lsat_1_v5_gn_5_17960 Lactuca sativa HOM05D004454 ORTHO05D005462 2.6e-08 64.7 172 23.8
Glyma.01G216500 Glycine max HOM05D004454 ORTHO05D005462 4.4e-08 63.9 162 25.3
VMungo1215G3435 Vigna mungo HOM05D004454 ORTHO05D005462 4.4e-08 63.9 159 25.2
DCAR_031479 Daucus carota HOM05D004454 ORTHO05D005462 7.5e-08 63.2 162 24.7
Phvul.002G154200 Phaseolus vulgaris HOM05D004454 ORTHO05D005462 7.5e-08 63.2 159 25.2
HanXRQChr05g0155441 Helianthus annuus HOM05D004454 ORTHO05D005462 9.8e-08 62.8 161 23.6
Peaxi162Scf00017g02211 Petunia axillaris HOM05D004454 ORTHO05D005462 9.8e-08 62.8 254 21.3
HPP92_012132 Vanilla planifolia HOM05D004454 ORTHO05D005462 9.8e-08 62.8 230 22.6
Psat4g146120 Pisum sativum HOM05D004454 ORTHO05D005462 2.2e-07 61.6 225 23.6
MBI04_g34104_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 3.7e-07 60.8 159 24.5
Sed0026284 Sechium edule HOM05D004454 ORTHO05D005462 3.7e-07 60.8 162 22.8
ClCG01G014140 Citrullus lanatus HOM05D004454 ORTHO05D005462 4.9e-07 60.5 162 22.8
MELO3C002234.2 Cucumis melo HOM05D004454 ORTHO05D005462 4.9e-07 60.5 162 22.8
CsaV3_1G008170 Cucumis sativus L. HOM05D004454 ORTHO05D005462 4.9e-07 60.5 162 22.8
HanXRQChr14g0438801 Helianthus annuus HOM05D004454 ORTHO05D005462 4.9e-07 60.5 162 23.5
TPR.G25821 Trifolium pratense HOM05D004454 ORTHO05D005462 1.1e-06 59.3 220 23.2
CiPaw.12G022700 Carya illinoinensis HOM05D004454 ORTHO05D005462 1.4e-06 58.9 160 23.1
Hma1.2p1_0002F.1_g002910 Hydrangea macrophylla HOM05D004454 ORTHO05D005462 1.4e-06 58.9 160 21.9
Cpa.g.sc35.32 Carica papaya HOM05D004454 ORTHO05D005462 1.9e-06 58.5 160 21.9
DCAR_026102 Daucus carota HOM05D004454 ORTHO05D005462 3.2e-06 57.8 220 21.4
TAR629G2352 Trochodendron aralioides HOM05D004454 ORTHO05D005462 3.2e-06 57.8 159 21.4
unitig_0.g2210 Utricularia gibba HOM05D004454 ORTHO05D005462 3.2e-06 57.8 148 21.6
PSO832G1188 Papaver somniferum HOM05D004454 ORTHO05D005462 4.1e-06 57.4 153 22.2
Nn3g17037 Nelumbo nucifera HOM05D004454 ORTHO05D005462 5.4e-06 57.0 161 21.7
PSO013G0161 Papaver somniferum HOM05D004454 ORTHO05D005462 5.4e-06 57.0 153 22.2
Prupe.5G180200 Prunus persica HOM05D004454 ORTHO05D005462 5.4e-06 57.0 160 21.9
Rhsim12G0161100 Rhododendron simsii HOM05D004454 ORTHO05D005462 5.4e-06 57.0 154 22.1
Solyc03g113740.4 Solanum lycopersicum HOM05D004454 ORTHO05D005462 5.4e-06 57.0 154 21.4
Sopen03g032790 Solanum pennellii HOM05D004454 ORTHO05D005462 5.4e-06 57.0 154 21.4
TAR374G1062 Trochodendron aralioides HOM05D004454 ORTHO05D005462 5.4e-06 57.0 159 21.4
MD17G1271900 Malus domestica HOM05D004454 ORTHO05D005462 7.0e-06 56.6 155 21.9
Manes.14G071000 Manihot esculenta HOM05D004454 ORTHO05D005462 7.0e-06 56.6 154 22.1
CSS0019873 Camellia sinensis var. sinensis HOM05D004454 ORTHO05D005462 9.2e-06 56.2 154 22.1
CSS0024488 Camellia sinensis var. sinensis HOM05D004454 ORTHO05D005462 9.2e-06 56.2 154 22.1
MD06G1182000 Malus domestica HOM05D004454 ORTHO05D005462 9.2e-06 56.2 154 22.1
MD13G1029000 Malus domestica HOM05D004454 ORTHO05D005462 9.2e-06 56.2 154 22.1
MD14G1188000 Malus domestica HOM05D004454 ORTHO05D005462 9.2e-06 56.2 154 22.1
PGSC0003DMG400024579 Solanum tuberosum HOM05D004454 ORTHO05D005462 9.2e-06 56.2 220 20.5


User provided reference genes

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