Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 2.6e-217 758.4 381 100.0
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 1.3e-168 596.7 392 75.5
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 1.9e-167 592.8 391 74.9
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 4.1e-167 591.7 393 72.8
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 7.8e-166 587.4 391 75.4
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 4.3e-164 581.6 392 73.5
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 4.3e-164 581.6 391 73.1
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 5.6e-164 581.3 391 74.7
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 4.7e-163 578.2 419 69.7
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 1.8e-162 576.2 382 72.3
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 5.2e-162 574.7 391 71.9
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 3.8e-160 568.5 391 71.9
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 6.4e-160 567.8 379 71.5
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 6.4e-160 567.8 391 71.9
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 1.4e-159 566.6 392 71.7
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.2e-159 565.5 391 72.9
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 7.1e-159 564.3 392 70.2
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 9.2e-159 563.9 390 72.1
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.1e-158 562.8 391 72.6
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 7.8e-158 560.8 448 64.5
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 5.1e-157 558.1 391 71.1
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 6.6e-157 557.8 391 71.1
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.1e-156 557.0 391 71.9
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 1.5e-156 556.6 391 71.1
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 2.5e-156 555.8 391 70.8
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 9.6e-156 553.9 391 70.1
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 1.6e-155 553.1 403 69.0
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 1.6e-155 553.1 391 67.5
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 3.6e-155 552.0 391 69.6
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 4.0e-154 548.5 417 66.7
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 5.3e-154 548.1 380 70.5
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 6.9e-154 547.7 391 69.8
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 1.5e-153 546.6 394 69.5
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 1.5e-153 546.6 391 70.3
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 2.0e-153 546.2 416 66.6
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 3.4e-153 545.4 394 69.3
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 7.6e-153 544.3 381 69.6
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 9.9e-153 543.9 391 67.5
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 1.7e-152 543.1 394 68.8
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 3.8e-152 542.0 392 69.4
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 3.8e-152 542.0 394 68.8
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 6.4e-152 541.2 392 69.1
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 8.4e-152 540.8 391 67.0
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 3.2e-151 538.9 391 67.5
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 3.2e-151 538.9 391 68.5
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 4.2e-151 538.5 394 68.3
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 1.2e-150 537.0 392 68.1
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 1.6e-150 536.6 467 59.7
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 2.1e-150 536.2 381 68.8
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 2.7e-150 535.8 381 69.8
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 3.5e-150 535.4 392 68.4
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 6.0e-150 534.6 391 67.5
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 1.3e-149 533.5 392 67.3
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 1.7e-149 533.1 391 67.8
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 1.7e-149 533.1 391 67.8
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 5.1e-149 531.6 391 67.3
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 1.1e-148 530.4 394 67.8
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.1e-148 530.4 426 64.8
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 1.9e-148 529.6 392 66.1
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 4.3e-148 528.5 391 67.3
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 7.3e-148 527.7 390 67.7
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 1.3e-147 526.9 392 67.6
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 4.8e-147 525.0 391 65.7
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 6.9e-146 521.2 406 63.3
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 9.0e-146 520.8 426 63.6
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 1.2e-145 520.4 390 65.1
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 3.4e-145 518.8 391 65.5
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 2.2e-144 516.2 391 65.0
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 6.4e-144 514.6 392 64.5
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 1.1e-143 513.8 392 64.5
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.4e-143 513.5 375 68.5
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 3.2e-143 512.3 391 64.2
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 4.2e-143 511.9 356 70.5
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 2.7e-142 509.2 370 68.4
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 6.7e-141 504.6 385 64.4
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 6.7e-141 504.6 392 63.5
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 4.3e-140 501.9 359 69.9
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 4.3e-140 501.9 391 64.2
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 1.9e-135 486.5 504 52.6
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 1.2e-134 483.8 391 61.9
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 9.0e-130 467.6 330 70.6
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 8.4e-128 461.1 379 60.9
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.0e-125 454.1 421 57.5
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 5.1e-125 451.8 391 58.6
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 6.7e-125 451.4 359 63.5
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 6.9e-122 441.4 442 53.8
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 4.8e-115 418.7 391 56.0
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 3.8e-112 409.1 313 62.9
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 1.1e-111 407.5 349 59.3
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 7.2e-111 404.8 350 58.6
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.3e-107 394.0 295 69.8
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 2.2e-104 383.3 272 68.4
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 3.6e-102 375.9 272 66.5
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 3.0e-101 372.9 399 50.9
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 6.1e-94 348.6 402 45.3
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.5e-92 344.0 250 68.8
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 5.3e-90 335.5 402 44.8
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 8.5e-88 328.2 235 68.9
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 1.4e-85 320.9 220 70.5
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 3.4e-84 316.2 287 55.4
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 1.2e-81 307.8 395 42.8
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 2.0e-76 290.4 193 74.1
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 3.4e-76 289.7 234 61.5
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 1.6e-70 270.8 484 35.7
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 2.0e-65 253.8 377 37.9
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 1.2e-62 244.6 322 41.9
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 1.4e-50 204.5 142 68.3
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 5.2e-45 186.0 136 68.4
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 5.4e-42 176.0 108 76.9
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 4.6e-41 172.9 530 26.4
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.2e-34 150.2 90 76.7
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.2e-34 150.2 90 76.7
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.2e-34 150.2 90 76.7
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.1e-34 149.1 90 75.6
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.3e-34 148.7 90 75.6
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.2e-33 148.3 90 75.6
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.6e-33 147.9 90 75.6
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.5e-33 146.7 83 79.5
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.3e-32 144.1 90 73.3
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 1.9e-31 141.0 104 65.4
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 9.6e-31 138.7 171 46.2
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 1.3e-30 138.3 108 63.0
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 4.8e-30 136.3 80 78.8
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.4e-28 130.2 71 83.1
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 8.4e-27 125.6 80 76.2
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 4.2e-26 123.2 182 39.6
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 6.7e-24 115.9 79 70.9
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.4e-23 112.5 62 80.6
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 7.4e-23 112.5 62 80.6
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.1e-22 110.9 62 80.6
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 5.3e-21 106.3 157 42.7
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 1.5e-20 104.8 258 33.7
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.0e-20 104.4 62 77.4
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.8e-20 102.8 62 74.2
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 6.5e-19 99.4 69 65.2
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 7.1e-18 95.9 60 75.0
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 1.2e-17 95.1 63 66.7
PRCOL_00001496 Prasinoderma coloniale HOM05D002536 ORTHO05D006290 1.6e-17 94.7 328 25.9
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 2.3e-16 90.9 62 75.8
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 3.9e-16 90.1 65 70.8
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.5e-15 87.4 90 51.1
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 1.9e-10 71.2 73 49.3
ClCG05G010860 Citrullus lanatus HOM05D002536 ORTHO05D006290 6.1e-09 66.2 42 71.4
TPR.G25728 Trifolium pratense HOM05D002536 ORTHO05D006290 6.1e-09 66.2 70 47.1
TPR.G3472 Trifolium pratense HOM05D002536 ORTHO05D000008 3.3e-07 60.5 32 78.1
AL2G24330 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 8.2e-06 55.8 34 76.5


User provided reference genes

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