Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 8.3e-230 800.0 411 100.0
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 8.8e-147 524.2 375 72.8
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 5.7e-146 521.5 360 75.6
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 7.4e-146 521.2 415 66.7
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 1.3e-145 520.4 390 70.5
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 2.2e-145 519.6 416 66.1
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 6.3e-145 518.1 343 77.3
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 8.2e-145 517.7 378 72.2
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 2.4e-144 516.2 378 71.7
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 5.3e-144 515.0 346 77.7
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 1.5e-143 513.5 336 78.9
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 2.6e-143 512.7 336 78.9
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 1.3e-142 510.4 334 78.1
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 5.0e-142 508.4 356 75.0
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 5.0e-142 508.4 340 75.9
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 1.4e-141 506.9 352 75.6
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 1.4e-141 506.9 350 74.6
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 3.2e-141 505.8 344 75.0
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 4.2e-141 505.4 405 67.2
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 4.2e-141 505.4 342 76.0
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 7.2e-141 504.6 358 72.6
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 1.6e-140 503.4 342 76.0
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 6.1e-140 501.5 328 78.4
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 1.4e-139 500.4 334 77.5
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 1.4e-139 500.4 371 70.4
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 3.9e-139 498.8 348 73.6
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 6.7e-139 498.0 346 73.4
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 1.5e-138 496.9 348 73.6
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 2.6e-138 496.1 348 73.3
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 3.3e-138 495.7 421 64.6
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 5.7e-138 495.0 354 73.4
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 2.2e-137 493.0 357 71.7
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 2.2e-137 493.0 347 73.2
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 1.8e-136 490.0 354 73.4
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 2.4e-136 489.6 326 77.9
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 5.3e-136 488.4 350 73.1
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 5.3e-136 488.4 371 70.4
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 7.0e-136 488.0 423 63.1
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 1.2e-135 487.3 429 63.6
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 1.5e-135 486.9 345 73.9
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 2.6e-135 486.1 351 69.8
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 4.5e-135 485.3 292 83.6
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 2.2e-134 483.0 362 70.2
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 2.9e-134 482.6 347 68.9
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 5.0e-134 481.9 345 72.2
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 6.5e-134 481.5 374 68.4
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 8.5e-134 481.1 362 70.2
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 1.9e-133 479.9 350 72.0
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 1.6e-132 476.9 354 68.6
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 2.7e-132 476.1 295 78.6
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 3.6e-132 475.7 345 70.4
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 3.6e-132 475.7 373 67.6
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 3.6e-132 475.7 355 69.3
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 4.7e-132 475.3 345 70.1
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 1.4e-131 473.8 385 66.2
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 2.3e-131 473.0 301 79.7
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 3.0e-131 472.6 348 68.1
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 5.2e-131 471.9 357 68.3
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 6.7e-131 471.5 357 68.3
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 6.7e-131 471.5 392 65.3
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 1.1e-130 470.7 345 70.1
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 1.1e-130 470.7 411 63.0
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 2.0e-130 469.9 361 67.3
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 2.6e-130 469.5 318 74.2
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 4.4e-130 468.8 409 62.6
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 5.7e-130 468.4 409 61.6
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 9.7e-130 467.6 357 67.5
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 1.1e-128 464.2 369 67.5
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 1.4e-128 463.8 329 71.7
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 3.1e-128 462.6 364 65.7
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 3.1e-128 462.6 302 79.5
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 5.3e-128 461.8 507 53.8
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 9.1e-128 461.1 344 70.1
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 1.2e-127 460.7 410 61.5
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 5.0e-126 455.3 407 62.2
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 9.4e-125 451.1 276 82.2
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 6.1e-124 448.4 347 66.9
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 6.8e-123 444.9 343 68.2
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 3.4e-122 442.6 275 80.0
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 4.4e-122 442.2 343 66.5
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 7.5e-122 441.4 299 76.6
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 9.8e-122 441.0 342 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 2.2e-121 439.9 435 57.2
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 6.5e-118 428.3 509 51.7
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 7.0e-112 408.3 265 77.0
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 1.6e-111 407.1 309 67.3
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 2.3e-110 403.3 318 67.3
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 3.3e-109 399.4 365 58.4
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 2.9e-105 386.3 371 57.7
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 1.8e-104 383.6 352 61.4
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 7.0e-104 381.7 370 56.8
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 2.9e-102 376.3 243 75.7
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 3.3e-101 372.9 302 66.6
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 3.3e-101 372.9 348 58.3
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 5.6e-101 372.1 287 69.0
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 7.3e-101 371.7 362 59.4
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 3.2e-96 356.3 267 71.5
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 6.0e-95 352.1 401 50.6
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 1.5e-93 347.4 241 77.2
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 1.8e-91 340.5 251 72.9
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 4.0e-91 339.3 265 67.9
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 2.9e-89 333.2 223 76.7
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 8.1e-84 315.1 314 51.6
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 8.6e-78 295.0 390 46.4
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 2.5e-77 293.5 199 76.4
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 3.3e-77 293.1 295 58.0
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 1.5e-74 284.3 265 58.9
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 1.4e-72 277.7 158 84.2
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 1.8e-67 260.8 157 78.3
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 1.3e-60 238.0 195 66.2
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 6.2e-60 235.7 157 71.3
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 1.3e-57 228.0 219 61.2
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 1.8e-46 191.0 156 63.5
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 1.6e-31 141.4 113 64.6
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 8.8e-30 135.6 113 61.9
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 2.8e-28 130.6 140 53.6
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 2.2e-25 120.9 107 58.9
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 2.1e-23 114.4 92 60.9
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 4.8e-20 103.2 92 60.9
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 5.5e-16 89.7 69 63.8
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 7.2e-16 89.4 154 46.1
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 7.5e-13 79.3 134 42.5
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 4.7e-07 60.1 63 50.8
Psat4g208440 Pisum sativum HOM05D006104 ORTHO05D008303 1.4e-06 58.5 49 65.3


User provided reference genes

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