Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 0.0e+00 1459.1 801 100.0
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 9.2e-201 704.5 821 56.6
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 3.5e-184 649.4 826 54.6
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 1.3e-181 641.0 827 53.2
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 4.9e-178 629.0 825 53.5
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 3.9e-175 619.4 817 52.0
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 1.5e-171 607.4 814 51.0
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 3.8e-170 602.8 835 52.0
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 4.6e-168 595.9 824 50.4
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 3.3e-166 589.7 806 50.0
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 3.3e-166 589.7 812 51.7
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 2.1e-165 587.0 814 50.0
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.7e-165 586.3 805 51.1
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 4.8e-165 585.9 831 50.4
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 1.1e-164 584.7 813 50.3
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 1.2e-163 581.3 830 49.6
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 1.7e-162 577.4 826 51.1
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.5e-161 573.5 810 49.9
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 2.1e-160 570.5 814 49.6
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 4.6e-160 569.3 823 49.7
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 6.7e-159 565.5 1007 44.7
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 3.3e-158 563.1 826 50.6
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 4.3e-158 562.8 816 49.3
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 1.3e-157 561.2 820 48.2
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 4.8e-157 559.3 897 46.4
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 1.8e-156 557.4 765 50.8
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 3.4e-155 553.1 823 48.7
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 4.5e-155 552.7 825 49.3
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 6.5e-154 548.9 818 47.8
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 1.9e-153 547.4 847 47.0
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 2.5e-153 547.0 829 47.4
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 1.6e-152 544.3 812 48.4
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.5e-150 537.7 817 48.3
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.5e-150 537.7 816 48.2
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 9.1e-148 528.5 813 46.4
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 2.9e-146 523.5 650 54.6
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 2.9e-146 523.5 818 47.2
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 8.5e-146 521.9 817 48.1
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 4.2e-145 519.6 828 47.0
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.2e-144 518.1 805 48.0
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 2.7e-144 516.9 836 46.7
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 6.7e-143 512.3 759 48.7
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.8e-141 506.9 814 46.1
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 8.2e-141 505.4 828 45.7
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 1.4e-140 504.6 837 45.3
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 1.4e-140 504.6 811 46.1
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 3.4e-139 500.0 851 45.4
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-138 498.0 814 46.1
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.2e-138 497.3 809 46.1
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 6.5e-138 495.7 815 46.1
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 1.0e-135 488.4 820 45.2
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 8.8e-135 485.3 818 46.0
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.2e-133 480.7 831 45.1
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 2.4e-132 477.2 823 44.3
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.4e-132 477.2 813 44.3
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 4.5e-131 473.0 822 45.7
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 4.5e-131 473.0 841 44.5
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.0e-130 471.9 470 61.9
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 2.2e-130 470.7 817 45.9
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.8e-130 469.9 859 42.4
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 5.0e-130 469.5 840 43.8
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 1.5e-129 468.0 851 42.8
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 1.8e-127 461.1 816 44.5
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 1.8e-127 461.1 811 44.5
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 3.3e-126 456.8 811 44.4
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.8e-124 451.1 789 43.7
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 5.3e-124 449.5 837 43.4
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 9.1e-124 448.7 829 42.5
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 7.7e-123 445.7 834 42.9
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 1.0e-122 445.3 839 43.6
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.3e-122 444.9 436 62.6
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 2.9e-122 443.7 849 42.2
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 3.8e-122 443.4 854 42.9
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 2.7e-120 437.2 803 42.8
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 8.0e-120 435.6 830 44.7
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 2.3e-119 434.1 690 45.1
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 5.2e-119 433.0 815 43.8
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 7.5e-118 429.1 820 43.8
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 7.5e-118 429.1 832 40.7
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 4.8e-117 426.4 810 42.8
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 4.1e-116 423.3 818 41.2
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 5.4e-116 422.9 819 43.1
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 2.3e-114 417.5 840 41.1
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 5.2e-111 406.4 392 60.7
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 8.8e-111 405.6 819 42.7
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 2.6e-110 404.1 816 40.7
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 1.3e-109 401.7 830 41.8
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 4.1e-108 396.7 843 40.3
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 3.5e-107 393.7 834 39.8
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 5.9e-107 392.9 803 41.0
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 4.3e-105 386.7 864 39.2
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 6.1e-104 382.9 562 48.2
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 5.4e-100 369.8 818 39.1
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 9.2e-100 369.0 819 39.8
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 2.0e-99 367.9 817 39.3
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 2.0e-99 367.9 815 39.0
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 4.6e-99 366.7 824 39.3
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 7.8e-99 365.9 814 39.8
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 1.6e-96 358.2 740 41.4
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 8.0e-96 355.9 785 39.0
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 8.9e-95 352.4 816 37.6
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 8.9e-95 352.4 544 46.5
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 8.9e-95 352.4 298 67.4
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 3.4e-94 350.5 661 43.6
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 7.5e-94 349.4 801 38.2
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 9.8e-94 349.0 818 39.1
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 2.4e-92 344.4 798 38.0
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 5.4e-92 343.2 479 48.6
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 4.6e-91 340.1 813 37.3
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 2.1e-88 331.3 609 42.2
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 6.2e-88 329.7 798 38.3
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 4.0e-87 327.0 803 37.7
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 2.9e-85 320.9 492 47.0
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 1.9e-84 318.2 851 36.2
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.9e-84 318.2 821 35.6
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 4.1e-84 317.0 820 37.2
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 5.4e-84 316.6 523 44.6
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 2.3e-82 311.2 827 37.1
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 3.0e-82 310.8 814 36.5
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 6.6e-82 309.7 822 36.3
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.2e-80 305.4 828 36.5
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 1.1e-79 302.4 497 44.5
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 1.8e-79 301.6 821 35.6
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 5.8e-78 296.6 452 46.5
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 2.9e-77 294.3 586 41.3
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 1.1e-76 292.4 499 45.5
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 4.1e-76 290.4 517 44.1
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 3.9e-74 283.9 825 34.3
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 6.6e-74 283.1 584 40.4
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 8.7e-74 282.7 827 35.9
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 1.9e-73 281.6 584 40.2
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 3.3e-73 280.8 809 36.2
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 9.6e-73 279.3 515 42.3
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.7e-66 258.5 640 38.1
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 5.1e-66 256.9 600 38.8
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 2.1e-51 208.4 679 35.1
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 5.6e-49 200.3 340 41.5
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 2.1e-48 198.4 418 38.8
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 3.7e-48 197.6 472 39.2
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 4.5e-46 190.7 426 35.9
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 1.4e-44 185.7 545 32.3
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 3.9e-42 177.6 422 34.4
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 5.7e-41 173.7 182 57.1
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 5.0e-37 160.6 388 36.6
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 6.5e-37 160.2 347 37.5
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 1.1e-36 159.5 113 73.5
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 2.1e-35 155.2 387 33.9
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 6.3e-32 143.7 100 77.0
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.4e-26 125.9 92 71.7
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 1.8e-26 125.6 112 64.3
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 3.9e-26 124.4 185 47.0
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 2.6e-25 121.7 567 28.6
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 4.4e-25 120.9 477 29.1
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 7.7e-22 110.2 189 45.0
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.2e-20 103.6 68 80.9
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.9e-18 97.8 66 77.3
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 1.7e-16 92.4 143 43.4
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.8e-16 90.9 75 68.0
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 1.8e-15 89.0 55 76.4
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 2.4e-15 88.6 76 61.8
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.1e-15 88.2 82 62.2
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 7.0e-15 87.0 82 62.2
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 2.6e-14 85.1 62 69.4
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.5e-14 84.3 97 56.7
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.9e-14 84.0 55 81.8
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.7e-13 82.4 54 81.5
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.2e-13 82.0 55 80.0
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.9e-12 79.0 55 76.4
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.2e-12 78.2 56 76.8
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.3e-10 72.0 50 76.0
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 3.0e-10 71.6 74 56.8
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 6.7e-10 70.5 50 74.0
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.2e-09 69.7 57 66.7
Gohir.D11G243366 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.7e-09 66.6 97 50.5
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 1.3e-08 66.2 78 48.7
Gohir.D04G051401 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-07 62.8 63 66.7
Gohir.A02G090400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.4e-07 62.0 63 65.1
Gohir.D12G066350 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.0e-07 60.5 63 65.1
Gorai.004G113400 Gossypium raimondii HOM05D003628 ORTHO05D004253 7.0e-07 60.5 63 63.5
Cre12.g514550 Chlamydomonas reinhardtii HOM05D003628 ORTHO05D004253 4.5e-06 57.8 95 35.8


User provided reference genes

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