Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 1.9e-253 879.0 549 100.0
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 5.2e-171 605.1 554 70.8
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 4.3e-133 479.2 509 60.9
CANSAT25G3543 Cannabis sativa HOM05D006236 ORTHO05D003486 3.5e-26 124.0 165 50.3
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 7.3e-24 116.3 182 36.8
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 3.6e-23 114.0 146 42.5
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 8.1e-23 112.8 216 37.0
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 1.4e-22 112.1 128 45.3
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 1.8e-22 111.7 195 35.9
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 9.0e-22 109.4 418 27.8
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 4.9e-20 103.6 212 35.4
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.4e-20 102.8 414 26.8
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 2.4e-19 101.3 424 28.1
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 2.4e-19 101.3 220 33.6
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 1.2e-18 99.0 229 31.0
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 1.6e-18 98.6 213 36.2
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 1.6e-18 98.6 196 35.7
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 1.0e-17 95.9 464 25.6
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 3.0e-17 94.4 180 36.7
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 5.1e-17 93.6 205 31.2
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 1.1e-16 92.4 223 30.5
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 1.1e-16 92.4 418 26.6
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 1.9e-16 91.7 198 30.3
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 2.5e-16 91.3 110 40.9
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 4.3e-16 90.5 114 38.6
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 7.4e-16 89.7 381 26.2
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 9.6e-16 89.4 115 38.3
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 1.6e-15 88.6 179 33.5
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 1.6e-15 88.6 183 32.8
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 2.8e-15 87.8 143 39.9
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 3.7e-15 87.4 201 34.8
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 4.8e-15 87.0 193 27.5
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.1e-14 85.9 159 33.3
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 1.1e-14 85.9 108 40.7
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.1e-14 85.9 118 43.2
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 1.1e-14 85.9 239 27.6
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 3.1e-14 84.3 185 27.0
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 4.0e-14 84.0 115 37.4
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 4.0e-14 84.0 230 30.0
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 6.9e-14 83.2 107 36.4
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 9.0e-14 82.8 199 31.7
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 1.2e-13 82.4 186 32.8
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 2.0e-13 81.6 113 43.4
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 2.6e-13 81.3 211 32.2
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.6e-13 81.3 248 31.9
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.6e-13 81.3 105 37.1
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 4.5e-13 80.5 264 29.2
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 4.5e-13 80.5 112 39.3
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 4.5e-13 80.5 200 28.0
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 4.5e-13 80.5 123 35.8
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 5.8e-13 80.1 191 31.9
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 7.6e-13 79.7 113 35.4
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 7.6e-13 79.7 196 29.1
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 1.0e-12 79.3 118 38.1
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 1.3e-12 79.0 239 32.2
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 1.3e-12 79.0 112 38.4
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.2e-12 78.2 121 39.7
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 2.9e-12 77.8 114 35.1
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 3.8e-12 77.4 167 34.1
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 3.8e-12 77.4 130 33.1
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 3.8e-12 77.4 114 36.0
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 4.9e-12 77.0 115 39.1
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 6.5e-12 76.6 110 33.6
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.1e-11 75.9 226 29.2
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.1e-11 75.9 128 35.9
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 1.1e-11 75.9 408 24.5
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 1.1e-11 75.9 115 37.4
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 1.4e-11 75.5 199 31.2
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 1.9e-11 75.1 211 29.9
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 1.9e-11 75.1 112 33.0
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 1.9e-11 75.1 112 33.0
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 1.9e-11 75.1 192 30.7
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.5e-11 74.7 126 32.5
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 2.5e-11 74.7 114 35.1
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 3.2e-11 74.3 121 33.1
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 3.2e-11 74.3 115 36.5
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 4.2e-11 73.9 127 37.0
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 4.2e-11 73.9 100 37.0
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 5.5e-11 73.6 121 38.8
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 5.5e-11 73.6 129 36.4
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 5.5e-11 73.6 110 32.7
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 5.5e-11 73.6 115 36.5
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 5.5e-11 73.6 212 30.7
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 7.1e-11 73.2 120 33.3
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 1.2e-10 72.4 257 29.6
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.2e-10 72.4 96 36.5
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.6e-10 72.0 112 38.4
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 1.6e-10 72.0 111 39.6
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 1.6e-10 72.0 111 39.6
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 2.1e-10 71.6 120 35.8
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 2.7e-10 71.2 98 41.8
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 2.7e-10 71.2 113 38.1
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 3.5e-10 70.9 122 35.2
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 3.5e-10 70.9 121 37.2
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 7.9e-10 69.7 95 36.8
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 1.0e-09 69.3 132 36.4
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.3e-09 68.9 100 36.0
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 1.8e-09 68.6 110 36.4
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.8e-09 68.6 118 38.1
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 1.8e-09 68.6 130 33.1
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 1.8e-09 68.6 72 43.1
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 3.0e-09 67.8 100 36.0
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 6.7e-09 66.6 129 35.7
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 8.7e-09 66.2 168 28.0
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 8.7e-09 66.2 115 33.0
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.1e-08 65.9 112 36.6
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 1.1e-08 65.9 116 34.5
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.5e-08 65.5 101 38.6
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 1.9e-08 65.1 105 41.0
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 1.9e-08 65.1 93 41.9
ECA246G0424 Erigeron canadensis HOM05D006236 ORTHO05D003486 2.5e-08 64.7 112 30.4
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 3.3e-08 64.3 113 33.6
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 3.3e-08 64.3 121 33.9
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 4.3e-08 63.9 145 33.1
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 4.3e-08 63.9 118 29.7
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 4.3e-08 63.9 118 29.7
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 5.7e-08 63.5 115 33.0
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 5.7e-08 63.5 109 32.1
Gohir.D02G077700 Gossypium hirsutum HOM05D006236 ORTHO05D003486 7.4e-08 63.2 111 34.2
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 7.4e-08 63.2 130 33.8
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 9.6e-08 62.8 150 27.3
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 9.6e-08 62.8 376 22.9
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 1.6e-07 62.0 116 32.8
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 1.6e-07 62.0 105 39.0
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 2.1e-07 61.6 307 23.8
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 2.1e-07 61.6 109 34.9
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 2.1e-07 61.6 100 39.0
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 2.1e-07 61.6 140 32.1
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 2.1e-07 61.6 154 31.8
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 2.8e-07 61.2 110 38.2
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.8e-07 61.2 130 33.1
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 2.8e-07 61.2 93 35.5
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 3.7e-07 60.8 129 32.6
PSO528G0025 Papaver somniferum HOM05D020877 ORTHO05D003486 3.7e-07 60.8 113 31.9
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 4.8e-07 60.5 116 31.9
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 8.2e-07 59.7 129 32.6
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 8.2e-07 59.7 129 32.6
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 8.2e-07 59.7 130 31.5
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.4e-06 58.9 137 31.4
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 1.8e-06 58.5 287 25.4
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 1.8e-06 58.5 136 34.6
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 1.8e-06 58.5 117 30.8
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 1.8e-06 58.5 99 34.3
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 2.4e-06 58.2 123 28.5
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 3.1e-06 57.8 129 31.8
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 4.1e-06 57.4 104 34.6
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 4.1e-06 57.4 129 31.8
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 4.1e-06 57.4 129 31.8
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 5.3e-06 57.0 122 31.1
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 6.9e-06 56.6 122 31.1
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 6.9e-06 56.6 122 31.1


User provided reference genes

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