Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1962 Cannabis sativa HOM05D007778 ORTHO05D009819 1.7e-97 359.4 184 100.0
QL02p054670 Quercus lobata HOM05D007778 ORTHO05D009819 9.6e-37 157.5 172 52.3
Haze_14055 Corylus avellana HOM05D007778 ORTHO05D009819 3.7e-36 155.6 172 50.0
Haze_14066 Corylus avellana HOM05D007778 ORTHO05D009819 3.7e-36 155.6 172 50.0
Glyma.18G046700 Glycine max HOM05D007778 ORTHO05D009819 9.0e-35 151.0 171 50.3
COL.COLO4_05993 Corchorus olitorius HOM05D007778 ORTHO05D009819 3.4e-34 149.1 122 60.7
RcHm_v2.0_Chr3g0487781 Rosa chinensis HOM05D007778 ORTHO05D009819 4.5e-34 148.7 174 44.8
Duzib211G0615 Durio zibethinus HOM05D007778 ORTHO05D009819 5.8e-34 148.3 136 55.1
Thecc.04G114700 Theobroma cacao HOM05D007778 ORTHO05D009819 7.6e-34 147.9 163 49.1
Gohir.A07G078000 Gossypium hirsutum HOM05D007778 ORTHO05D009819 1.7e-33 146.7 141 53.9
Gohir.D07G082800 Gossypium hirsutum HOM05D007778 ORTHO05D009819 2.9e-33 146.0 141 53.2
Gorai.001G088400 Gossypium raimondii HOM05D007778 ORTHO05D009819 2.9e-33 146.0 141 53.2
TPR.G37414 Trifolium pratense HOM05D007778 ORTHO05D009819 8.4e-33 144.4 168 49.4
Psat4g221240 Pisum sativum HOM05D007778 ORTHO05D009819 3.2e-32 142.5 169 47.9
Prupe.3G011900 Prunus persica HOM05D007778 ORTHO05D009819 4.2e-32 142.1 172 46.5
Glyma.11G204300 Glycine max HOM05D007778 ORTHO05D009819 5.5e-32 141.7 174 47.1
Lalb_Chr15g0085401 Lupinus albus HOM05D007778 ORTHO05D009819 5.5e-32 141.7 168 47.6
FAN28G0539 Fragaria x ananassa HOM05D007778 ORTHO05D009819 7.2e-32 141.4 157 47.1
Ciclev10012879m.g Citrus clementina HOM05D007778 ORTHO05D009819 9.3e-32 141.0 188 46.3
FvH4_1g27614 Fragaria vesca HOM05D007778 ORTHO05D009819 1.2e-31 140.6 174 44.8
Cpa.g.sc116.56 Carica papaya HOM05D007778 ORTHO05D009819 1.6e-31 140.2 171 48.5
Atru.chr1.1920 Acer truncatum HOM05D007778 ORTHO05D009819 2.7e-31 139.4 122 55.7
MD09G1282000 Malus domestica HOM05D007778 ORTHO05D009819 4.6e-31 138.7 118 59.3
AUR62004744 Chenopodium quinoa HOM05D007778 ORTHO05D009819 6.1e-31 138.3 166 46.4
Cc07_g09880 Coffea canephora HOM05D007778 ORTHO05D009819 6.1e-31 138.3 121 52.9
CAN.G1228.14 Capsicum annuum HOM05D007778 ORTHO05D009819 7.9e-31 137.9 182 45.6
MBI06_g15669_MAGBIO Magnolia biondii HOM05D007778 ORTHO05D009819 7.9e-31 137.9 149 49.7
MELO3C025069.2 Cucumis melo HOM05D007778 ORTHO05D009819 1.0e-30 137.5 174 44.8
arahy.Tifrunner.gnm1.ann1.0X1LIN Arachis hypogaea HOM05D007778 ORTHO05D009819 1.8e-30 136.7 165 47.9
Actinidia04816 Actinidia chinensis HOM05D001693 ORTHO05D001588 2.3e-30 136.3 118 56.8
arahy.Tifrunner.gnm1.ann1.U19ACF Arachis hypogaea HOM05D007778 ORTHO05D009819 2.3e-30 136.3 165 47.9
AUR62037508 Chenopodium quinoa HOM05D007778 ORTHO05D009819 3.0e-30 136.0 170 45.9
FAN28G2555 Fragaria x ananassa HOM05D007778 ORTHO05D009819 3.0e-30 136.0 150 48.0
Nitab4.5_0001485g0010 Nicotiana tabacum HOM05D007778 ORTHO05D009819 3.9e-30 135.6 142 50.7
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 5.1e-30 135.2 158 48.1
Nitab4.5_0007160g0010 Nicotiana tabacum HOM05D007778 ORTHO05D009819 6.7e-30 134.8 121 56.2
EL10Ac4g08900 Beta vulgaris HOM05D007778 ORTHO05D009819 8.7e-30 134.4 168 45.8
Phvul.006G084300 Phaseolus vulgaris HOM05D007778 ORTHO05D009819 8.7e-30 134.4 142 49.3
Dinv17427 Davidia involucrata HOM05D007778 ORTHO05D009819 1.1e-29 134.0 105 61.0
CsaV3_5G020220 Cucumis sativus L. HOM05D007778 ORTHO05D009819 1.9e-29 133.3 174 42.5
Medtr3g064070 Medicago truncatula HOM05D007778 ORTHO05D009819 1.9e-29 133.3 164 49.4
TWI74G0094 Tripterygium wilfordii HOM05D007778 ORTHO05D009819 1.9e-29 133.3 182 43.4
PGSC0003DMG400024679 Solanum tuberosum HOM05D007778 ORTHO05D009819 3.3e-29 132.5 180 43.9
VMungo0540G2068 Vigna mungo HOM05D007778 ORTHO05D009819 3.3e-29 132.5 172 43.6
Migut.D01632 Erythranthe guttata HOM05D007778 ORTHO05D009819 4.3e-29 132.1 156 46.2
Nn4g24886 Nelumbo nucifera HOM05D007778 ORTHO05D009819 4.3e-29 132.1 119 57.1
Oeu032099.1 Olea europaea HOM05D007778 ORTHO05D009819 4.3e-29 132.1 139 49.6
ClCG01G008280 Citrullus lanatus HOM05D007778 ORTHO05D009819 5.7e-29 131.7 160 43.8
PSO782G0382 Papaver somniferum HOM05D007778 ORTHO05D009819 1.3e-28 130.6 120 52.5
Lsat_1_v5_gn_4_110701 Lactuca sativa HOM05D007778 ORTHO05D009819 2.2e-28 129.8 111 57.7
Lj6g0006010 Lotus japonicus HOM05D007778 ORTHO05D009819 8.2e-28 127.9 146 47.9
Sabra17G0107900 Salix brachista HOM05D007778 ORTHO05D009819 8.2e-28 127.9 184 41.8
Manes.01G118400 Manihot esculenta HOM05D007778 ORTHO05D009819 1.1e-27 127.5 183 44.3
HanXRQChr09g0270391 Helianthus annuus HOM05D007778 ORTHO05D009819 2.4e-27 126.3 111 55.9
SalBow7G4718 Salvia bowleyana HOM05D007778 ORTHO05D009819 5.3e-27 125.2 120 53.3
Aqoxy3G04229 Aquilegia oxysepala HOM05D007778 ORTHO05D009819 1.5e-26 123.6 141 47.5
Potri.017G129700 Populus trichocarpa HOM05D007778 ORTHO05D009819 2.0e-26 123.2 174 42.5
PSO063G5463 Papaver somniferum HOM05D007778 ORTHO05D009819 2.6e-26 122.9 120 50.0
Eucgr.C02480 Eucalyptus grandis HOM05D007778 ORTHO05D009819 4.5e-26 122.1 176 41.5
Eucgr.C02546 Eucalyptus grandis HOM05D007778 ORTHO05D009819 5.9e-26 121.7 176 40.9
CDE05G2207 Ceratophyllum demersum HOM05D007778 ORTHO05D009819 7.7e-26 121.3 149 47.0
PGR102G3280 Punica granatum HOM05D007778 ORTHO05D009819 1.7e-25 120.2 122 50.8
unitig_736.g22611 Utricularia gibba HOM05D007778 ORTHO05D009819 2.5e-24 116.3 118 48.3
CSS0000221 Camellia sinensis var. sinensis HOM05D007778 ORTHO05D009819 5.5e-24 115.2 181 40.3
FAN26G2882 Fragaria x ananassa HOM05D007778 ORTHO05D009819 5.5e-24 115.2 102 54.9
Lj5P133T80 Lonicera japonica HOM05D007778 ORTHO05D009819 2.1e-23 113.2 114 53.5
Rhsim08G0144800 Rhododendron simsii HOM05D007778 ORTHO05D009819 3.0e-22 109.4 105 55.2
Os04g0523000 Oryza sativa ssp. japonica HOM05D007778 ORTHO05D009819 5.1e-22 108.6 114 47.4
Zm00001eb077030 Zea mays HOM05D007778 ORTHO05D009819 1.5e-21 107.1 119 47.9
CiPaw.03G008500 Carya illinoinensis HOM05D007778 ORTHO05D009819 9.7e-21 104.4 160 41.2
Cfa008003 Carpinus fangiana HOM05D007778 ORTHO05D009819 1.1e-19 100.9 154 40.3
Sp5g21340 Schrenkiella parvula HOM05D007778 ORTHO05D009819 1.8e-19 100.1 109 46.8
Sed0002702 Sechium edule HOM05D007778 ORTHO05D009819 5.3e-19 98.6 91 50.5
MD09G1282100 Malus domestica HOM05D007778 ORTHO05D009819 1.2e-18 97.4 88 56.8
Eucgr.I00539 Eucalyptus grandis HOM05D007778 ORTHO05D009819 3.4e-18 95.9 153 39.9
CARHR144520 Cardamine hirsuta HOM05D007778 ORTHO05D009819 5.9e-18 95.1 109 43.1
AL5G11050 Arabidopsis lyrata HOM05D007778 ORTHO05D009819 1.0e-17 94.4 109 42.2
AT2G01918 Arabidopsis thaliana HOM05D007778 ORTHO05D009819 1.3e-17 94.0 183 32.2
Carub.0005s0093 Capsella rubella HOM05D007778 ORTHO05D009819 1.3e-17 94.0 109 42.2
THA.LOC104823842 Tarenaya hassleriana HOM05D007778 ORTHO05D009819 5.5e-16 88.6 109 39.4
BcaC03g14741 Brassica carinata HOM05D007778 ORTHO05D009819 7.2e-16 88.2 109 41.3
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 7.2e-16 88.2 109 41.3
Aa31LG2G2990 Aethionema arabicum HOM05D007778 ORTHO05D009819 9.4e-16 87.8 106 45.3
BcaB05g24166 Brassica carinata HOM05D007778 ORTHO05D009819 1.2e-15 87.4 99 43.4
Duzib133G0400 Durio zibethinus HOM05D007778 ORTHO05D009819 1.4e-14 84.0 73 50.7
GSVIVG01000799001 Vitis vinifera HOM05D007778 ORTHO05D009819 2.3e-14 83.2 74 56.8
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 5.7e-13 78.6 90 43.3
BraA02t06417Z Brassica rapa HOM05D003087 ORTHO05D009819 5.7e-13 78.6 90 43.3
Nitab4.5_0003738g0060 Nicotiana tabacum HOM05D004209 ORTHO05D004970 1.7e-12 77.0 110 33.6
Thhalv10019189m.g Eutrema salsugineum HOM05D007778 ORTHO05D009819 2.2e-12 76.6 109 38.5
Aqoxy4G02128 Aquilegia oxysepala HOM05D004209 ORTHO05D004970 6.3e-12 75.1 119 33.6
Ciclev10016525m.g Citrus clementina HOM05D004209 ORTHO05D004970 2.4e-11 73.2 110 36.4
DCAR_028152 Daucus carota HOM05D004209 ORTHO05D004970 2.4e-11 73.2 90 38.9
DCAR_024925 Daucus carota HOM05D004209 ORTHO05D004970 3.1e-11 72.8 90 37.8
Solyc02g079950.3 Solanum lycopersicum HOM05D004209 ORTHO05D004970 3.1e-11 72.8 105 34.3
Sopen02g024700 Solanum pennellii HOM05D004209 ORTHO05D004970 3.1e-11 72.8 105 34.3
SEGI_28796 Sequoiadendron giganteum HOM05D004209 ORTHO05D004970 5.3e-11 72.0 90 40.0
Hund23509 Selenicereus undatus HOM05D004209 ORTHO05D004970 7.0e-11 71.6 111 34.2
Cpa.g.sc139.72 Carica papaya HOM05D004209 ORTHO05D004970 9.1e-11 71.2 122 32.8
SMO171G0022 Selaginella moellendorffii HOM05D004209 ORTHO05D004970 9.1e-11 71.2 106 36.8
Lj3g0019605 Lotus japonicus HOM05D004209 ORTHO05D004970 1.2e-10 70.9 110 32.7
arahy.Tifrunner.gnm1.ann1.1B2UBR Arachis hypogaea HOM05D004209 ORTHO05D004970 1.6e-10 70.5 110 32.7
arahy.Tifrunner.gnm1.ann1.G1SUYP Arachis hypogaea HOM05D004209 ORTHO05D004970 1.6e-10 70.5 110 32.7
PSO210G5932 Papaver somniferum HOM05D004209 ORTHO05D004970 1.6e-10 70.5 106 34.0
Ah.14g088480 Amaranthus hybridus HOM05D004209 ORTHO05D004970 2.0e-10 70.1 102 35.3
HanXRQChr01g0004411 Helianthus annuus HOM05D004209 ORTHO05D004970 2.0e-10 70.1 119 32.8
PSO832G1281 Papaver somniferum HOM05D004209 ORTHO05D004970 2.0e-10 70.1 106 34.0
PGSC0003DMG400021727 Solanum tuberosum HOM05D004209 ORTHO05D004970 2.0e-10 70.1 105 33.3
Thecc.06G208500 Theobroma cacao HOM05D004209 ORTHO05D004970 2.0e-10 70.1 110 34.5
Aa31LG9G9260 Aethionema arabicum HOM05D004209 ORTHO05D004970 2.6e-10 69.7 110 33.6
CDE02G0449 Ceratophyllum demersum HOM05D004209 ORTHO05D004970 3.5e-10 69.3 110 32.7
Ca_14052_v3 Cicer arietinum L. HOM05D004209 ORTHO05D004970 3.5e-10 69.3 105 36.2
Lsat_1_v5_gn_1_123241 Lactuca sativa HOM05D004209 ORTHO05D004970 3.5e-10 69.3 102 36.3
SGA_v2.0_scaffold49G18269 Striga asiatica HOM05D004209 ORTHO05D004970 3.5e-10 69.3 110 34.5
CARHR227860 Cardamine hirsuta HOM05D004209 ORTHO05D004970 4.5e-10 68.9 90 36.7
PGR004G2512 Punica granatum HOM05D004209 ORTHO05D004970 4.5e-10 68.9 110 33.6
Nitab4.5_0002345g0070 Nicotiana tabacum HOM05D004209 ORTHO05D004970 5.9e-10 68.6 105 32.4
Pp3c5_4110 Physcomitrium patens HOM05D004209 ORTHO05D004970 5.9e-10 68.6 91 37.4
THA.LOC104812569 Tarenaya hassleriana HOM05D004209 ORTHO05D004970 5.9e-10 68.6 102 34.3
Sc24g0000590 Simmondsia chinensis HOM05D004209 ORTHO05D004970 7.7e-10 68.2 110 32.7
CAN.G424.102 Capsicum annuum HOM05D004209 ORTHO05D004970 1.0e-09 67.8 105 33.3
FAN21G1744 Fragaria x ananassa HOM05D004209 ORTHO05D004970 1.0e-09 67.8 105 34.3
Nn1g03715 Nelumbo nucifera HOM05D004209 ORTHO05D004970 1.0e-09 67.8 119 30.3
Nitab4.5_0006475g0030 Nicotiana tabacum HOM05D004209 ORTHO05D004970 1.0e-09 67.8 105 32.4
EL10As6g23703 Beta vulgaris HOM05D004209 ORTHO05D004970 1.7e-09 67.0 110 31.8
Cfa016409 Carpinus fangiana HOM05D004209 ORTHO05D004970 1.7e-09 67.0 105 35.2
AUR62014619 Chenopodium quinoa HOM05D004209 ORTHO05D004970 1.7e-09 67.0 102 32.4
AUR62044485 Chenopodium quinoa HOM05D004209 ORTHO05D004970 1.7e-09 67.0 102 32.4
Sc24g0000090 Simmondsia chinensis HOM05D004209 ORTHO05D004970 1.7e-09 67.0 110 31.8
ClCG03G005130 Citrullus lanatus HOM05D004209 ORTHO05D004970 2.2e-09 66.6 109 33.9
TWI63G1530 Tripterygium wilfordii HOM05D004209 ORTHO05D004970 2.2e-09 66.6 105 31.4
VMungo0331G0173 Vigna mungo HOM05D004209 ORTHO05D004970 2.2e-09 66.6 122 29.5
MELO3C002510.2 Cucumis melo HOM05D004209 ORTHO05D004970 2.9e-09 66.2 109 33.0
ECA248G1673 Erigeron canadensis HOM05D004209 ORTHO05D004970 2.9e-09 66.2 105 35.2
Glyma.03G114600 Glycine max HOM05D004209 ORTHO05D004970 2.9e-09 66.2 110 31.8
HanXRQChr11g0339031 Helianthus annuus HOM05D004209 ORTHO05D004970 2.9e-09 66.2 90 36.7
Phvul.010G052300 Phaseolus vulgaris HOM05D004209 ORTHO05D004970 2.9e-09 66.2 110 30.9
vmacro15841 Vaccinium macrocarpon HOM05D004209 ORTHO05D004970 2.9e-09 66.2 110 33.6
CsaV3_1G011330 Cucumis sativus L. HOM05D004209 ORTHO05D004970 3.8e-09 65.9 109 33.9
Migut.M01264 Erythranthe guttata HOM05D004209 ORTHO05D004970 3.8e-09 65.9 106 32.1
Sed0006596 Sechium edule HOM05D004209 ORTHO05D004970 3.8e-09 65.9 109 33.0
CBR_g33939 Chara braunii HOM05D004209 ORTHO05D004970 5.0e-09 65.5 91 35.2
Eucgr.D00854 Eucalyptus grandis HOM05D004209 ORTHO05D004970 5.0e-09 65.5 110 31.8
Glyma.07G112000 Glycine max HOM05D004209 ORTHO05D004970 5.0e-09 65.5 110 30.9
Lalb_Chr13g0290461 Lupinus albus HOM05D004209 ORTHO05D004970 5.0e-09 65.5 102 33.3
QL05p077152 Quercus lobata HOM05D004209 ORTHO05D004970 5.0e-09 65.5 110 31.8
Rhsim02G0115100 Rhododendron simsii HOM05D004209 ORTHO05D004970 5.0e-09 65.5 110 32.7
Actinidia11832 Actinidia chinensis HOM05D004209 ORTHO05D004970 6.5e-09 65.1 108 34.3
ATR0618G409 Amborella trichopoda HOM05D007778 ORTHO05D009819 6.5e-09 65.1 88 38.6
CiPaw.09G080300 Carya illinoinensis HOM05D004209 ORTHO05D004970 6.5e-09 65.1 110 31.8
AUR62012582 Chenopodium quinoa HOM05D004209 ORTHO05D004970 6.5e-09 65.1 102 32.4
MSTRG.13163 Avicennia marina HOM05D004209 ORTHO05D004970 8.5e-09 64.7 90 35.6
Gohir.D06G125800 Gossypium hirsutum HOM05D004209 ORTHO05D004970 8.5e-09 64.7 110 30.9
Gorai.010G146500 Gossypium raimondii HOM05D004209 ORTHO05D004970 8.5e-09 64.7 110 30.9
Psat4g225520 Pisum sativum HOM05D004209 ORTHO05D004970 8.5e-09 64.7 91 37.4
Prupe.4G029300 Prunus persica HOM05D004209 ORTHO05D004970 8.5e-09 64.7 110 30.0
Sabra11G0018800 Salix brachista HOM05D004209 ORTHO05D004970 8.5e-09 64.7 110 30.9
SalBow8G1884 Salvia bowleyana HOM05D004209 ORTHO05D004970 8.5e-09 64.7 108 33.3
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 1.1e-08 64.3 105 31.4
MD10G1311700 Malus domestica HOM05D004209 ORTHO05D004970 1.1e-08 64.3 110 30.9
TPR.G33125 Trifolium pratense HOM05D004209 ORTHO05D004970 1.1e-08 64.3 105 35.2
Haze_06687 Corylus avellana HOM05D004209 ORTHO05D004970 1.5e-08 63.9 105 33.3
QL93p0073_1246 Quercus lobata HOM05D004209 ORTHO05D004970 1.5e-08 63.9 110 30.9
Hund21317 Selenicereus undatus HOM05D004209 ORTHO05D004970 1.5e-08 63.9 103 31.1
CDE11G0355 Ceratophyllum demersum HOM05D004209 ORTHO05D004970 1.9e-08 63.5 105 31.4
Lj2A275T37 Lonicera japonica HOM05D004209 ORTHO05D004970 1.9e-08 63.5 108 33.3
MD05G1336200 Malus domestica HOM05D004209 ORTHO05D004970 1.9e-08 63.5 110 30.9
CANSAT56G4323 Cannabis sativa HOM05D004209 ORTHO05D004970 3.2e-08 62.8 105 31.4
Gohir.A06G121600 Gossypium hirsutum HOM05D004209 ORTHO05D004970 4.2e-08 62.4 110 30.0
Lj2A275T36 Lonicera japonica HOM05D004209 ORTHO05D004970 7.2e-08 61.6 114 28.9
HPP92_000863 Vanilla planifolia HOM05D004209 ORTHO05D004970 1.2e-07 60.8 108 31.5
RcHm_v2.0_Chr5g0004501 Rosa chinensis HOM05D004209 ORTHO05D004970 2.1e-07 60.1 110 29.1
TWI38G0662 Tripterygium wilfordii HOM05D004209 ORTHO05D004970 2.1e-07 60.1 90 31.1
CDE05G2391 Ceratophyllum demersum HOM05D004209 ORTHO05D004970 8.0e-07 58.2 104 30.8
HPP92_000866 Vanilla planifolia HOM05D004209 ORTHO05D004970 3.0e-06 56.2 94 33.0


User provided reference genes

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