Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 7.0e-207 723.8 380 100.0
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 1.6e-150 536.6 383 72.8
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 1.3e-149 533.5 393 73.5
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 3.9e-149 531.9 393 72.8
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 8.7e-149 530.8 390 74.6
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 2.1e-147 526.2 394 73.1
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 1.5e-145 520.0 383 73.9
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 2.0e-145 519.6 388 71.4
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 7.6e-145 517.7 382 71.7
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 2.9e-144 515.8 382 73.6
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 1.1e-143 513.8 385 70.1
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 1.1e-143 513.8 385 70.1
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 2.4e-143 512.7 398 68.6
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 1.6e-142 510.0 398 69.3
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 8.1e-139 497.7 334 76.3
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 3.1e-138 495.7 393 68.2
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 4.0e-138 495.4 382 69.6
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 3.4e-137 492.3 392 67.6
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 3.4e-137 492.3 399 67.7
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 5.8e-137 491.5 383 68.7
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 2.9e-136 489.2 391 67.3
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 4.9e-136 488.4 383 67.9
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 6.4e-136 488.0 380 67.9
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 9.3e-135 484.2 384 67.4
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 1.2e-134 483.8 334 74.9
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 1.6e-134 483.4 416 63.7
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 3.5e-134 482.3 382 69.1
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 1.8e-133 479.9 382 67.8
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 2.3e-133 479.6 400 65.8
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 3.0e-133 479.2 366 69.1
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 3.0e-133 479.2 397 66.0
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 3.9e-133 478.8 388 65.7
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 5.1e-133 478.4 391 66.0
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 5.1e-133 478.4 334 73.4
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 1.1e-132 477.2 383 66.8
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 2.5e-132 476.1 375 68.0
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 2.5e-132 476.1 381 66.7
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 5.6e-132 474.9 329 73.3
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 2.8e-131 472.6 384 66.9
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 3.1e-130 469.2 389 64.5
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 5.3e-130 468.4 374 66.8
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 5.3e-130 468.4 363 68.9
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 5.3e-130 468.4 378 65.1
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 2.0e-129 466.5 385 65.7
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 9.9e-129 464.2 363 68.0
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 2.2e-128 463.0 363 67.8
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 1.9e-127 459.9 395 63.5
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 2.4e-127 459.5 363 67.8
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 4.2e-127 458.8 376 65.2
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 9.3e-127 457.6 381 64.8
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 4.6e-126 455.3 384 64.6
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 4.6e-126 455.3 318 73.9
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 4.6e-126 455.3 359 67.4
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 6.0e-126 454.9 376 64.4
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 1.0e-125 454.1 388 64.4
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 1.0e-125 454.1 388 64.4
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 1.8e-125 453.4 375 65.1
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 2.1e-123 446.4 384 63.8
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 2.1e-123 446.4 314 73.2
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 2.1e-123 446.4 376 63.8
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 4.8e-123 445.3 384 63.5
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 4.8e-123 445.3 332 68.7
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 1.4e-122 443.7 331 68.3
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 1.8e-122 443.4 332 69.6
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 1.9e-119 433.3 316 69.3
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 9.3e-119 431.0 376 64.6
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 1.2e-118 430.6 401 59.9
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 2.1e-118 429.9 373 60.6
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 6.0e-118 428.3 399 61.4
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 1.0e-117 427.6 399 61.4
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 1.9e-116 423.3 330 66.4
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 7.4e-116 421.4 306 67.6
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 3.7e-115 419.1 373 62.2
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 3.7e-115 419.1 345 64.1
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 4.8e-115 418.7 345 66.1
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 6.3e-115 418.3 345 63.8
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 3.1e-114 416.0 345 63.8
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 9.0e-114 414.5 376 59.0
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 4.5e-113 412.1 343 65.3
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 7.7e-113 411.4 386 59.8
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 1.0e-112 411.0 308 67.5
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 5.5e-111 405.2 329 64.7
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 9.4e-111 404.4 415 56.6
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 1.2e-110 404.1 357 59.9
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 2.3e-109 399.8 256 78.5
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 1.1e-108 397.5 329 64.4
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 4.3e-108 395.6 378 57.7
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 1.1e-106 391.0 328 61.0
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 1.4e-106 390.6 313 68.7
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 5.3e-106 388.7 364 61.8
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 1.4e-95 354.0 389 51.9
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 4.7e-94 349.0 252 68.3
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 3.7e-91 339.3 312 55.4
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 1.4e-90 337.4 227 74.4
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 4.5e-89 332.4 311 60.1
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 7.7e-89 331.6 287 63.1
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 1.0e-88 331.3 295 55.6
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 4.2e-87 325.9 348 55.2
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 3.3e-84 316.2 198 80.3
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 1.1e-82 311.2 337 48.7
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 5.3e-82 308.9 309 54.0
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 4.7e-78 295.8 309 49.2
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 6.1e-78 295.4 315 52.1
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 1.4e-77 294.3 188 78.2
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 1.3e-72 277.7 179 79.9
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 8.6e-72 275.0 271 59.0
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 8.0e-70 268.5 247 58.7
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 2.0e-65 253.8 223 58.7
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 6.6e-64 248.8 159 81.1
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 4.7e-62 242.7 253 56.9
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 3.1e-61 240.0 200 65.0
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 8.0e-54 215.3 268 42.5
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 1.7e-51 207.6 302 47.0
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 4.0e-45 186.4 279 40.1
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 4.9e-43 179.5 137 66.4
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 1.2e-41 174.9 289 34.6
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 2.3e-32 144.1 233 42.5
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 1.9e-31 141.0 107 68.2
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 1.5e-28 131.3 129 55.0
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 9.3e-26 122.1 84 77.4
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 1.2e-25 121.7 229 41.5
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 1.0e-24 118.6 84 73.8
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 4.5e-12 76.6 62 61.3
Oeu037664.1 Olea europaea HOM05D006658 ORTHO05D008515 1.0e-11 75.5 67 53.7
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 1.0e-08 65.5 46 69.6
Medtr2g021155 Medicago truncatula HOM05D000007 ORTHO05D000017 4.8e-06 56.6 75 46.7


User provided reference genes

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