Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 2.0e-53 212.2 114 100.0
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 5.6e-27 124.4 129 60.5
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 6.2e-26 120.9 113 62.8
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 8.1e-26 120.6 119 58.8
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.1e-25 120.2 112 60.7
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.4e-25 119.0 125 58.4
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 5.2e-25 117.9 125 58.4
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 6.9e-25 117.5 110 59.1
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 6.9e-25 117.5 116 62.9
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.2e-24 116.7 114 59.6
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 1.2e-24 116.7 102 65.7
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.5e-24 116.3 119 57.1
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 5.8e-24 114.4 104 64.4
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 5.8e-24 114.4 119 58.8
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 9.9e-24 113.6 108 61.1
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 1.7e-23 112.8 121 57.9
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 1.7e-23 112.8 119 59.7
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 2.2e-23 112.5 116 65.5
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 2.9e-23 112.1 116 63.8
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 2.9e-23 112.1 116 64.7
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 1.1e-22 110.2 115 54.8
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.9e-22 109.4 111 55.0
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 4.2e-22 108.2 103 66.0
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.1e-22 107.5 117 57.3
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 7.1e-22 107.5 117 57.3
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.7e-21 105.5 104 64.4
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.5e-21 105.1 104 64.4
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 7.8e-21 104.0 104 63.5
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 3.0e-20 102.1 96 60.4
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 3.9e-20 101.7 109 57.8
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 3.9e-20 101.7 99 64.6
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 5.1e-20 101.3 112 57.1
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 5.1e-20 101.3 101 57.4
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 1.9e-19 99.4 118 57.6
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 2.5e-19 99.0 120 54.2
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 3.3e-19 98.6 110 52.7
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 3.3e-19 98.6 112 55.4
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 5.6e-19 97.8 106 55.7
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 5.6e-19 97.8 129 55.0
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 5.6e-19 97.8 114 52.6
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 7.3e-19 97.4 114 51.8
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 7.3e-19 97.4 114 51.8
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 9.6e-19 97.1 117 53.8
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 9.6e-19 97.1 102 54.9
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 9.6e-19 97.1 112 50.9
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.6e-18 96.3 103 52.4
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.6e-18 96.3 112 50.9
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 1.6e-18 96.3 113 54.9
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.1e-18 95.9 118 51.7
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.1e-18 95.9 114 51.8
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 2.1e-18 95.9 114 51.8
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.1e-18 95.9 111 53.2
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 2.8e-18 95.5 101 52.5
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 3.6e-18 95.1 98 56.1
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 3.6e-18 95.1 98 58.2
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.8e-18 94.7 132 56.1
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.8e-18 94.7 132 56.1
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 4.8e-18 94.7 117 51.3
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 6.2e-18 94.4 117 53.8
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 8.1e-18 94.0 101 51.5
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 8.1e-18 94.0 105 53.3
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.1e-17 93.6 115 53.9
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 1.1e-17 93.6 111 57.7
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.1e-17 93.6 115 49.6
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 1.8e-17 92.8 92 53.3
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 2.4e-17 92.4 101 52.5
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.4e-17 92.4 98 58.2
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 2.4e-17 92.4 103 50.5
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.4e-17 92.4 113 52.2
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.1e-17 92.0 110 53.6
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.0e-17 91.7 110 52.7
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 5.3e-17 91.3 102 51.0
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.3e-17 91.3 110 52.7
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 6.9e-17 90.9 110 52.7
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 6.9e-17 90.9 112 50.0
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 9.0e-17 90.5 110 55.5
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 9.0e-17 90.5 103 49.5
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 9.0e-17 90.5 119 50.4
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 9.0e-17 90.5 103 55.3
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.2e-16 90.1 103 50.5
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.2e-16 90.1 103 51.5
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 1.5e-16 89.7 111 53.2
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.5e-16 89.7 98 57.1
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 2.0e-16 89.4 101 49.5
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.6e-16 89.0 103 48.5
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 3.4e-16 88.6 109 52.3
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 4.5e-16 88.2 109 48.6
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 5.8e-16 87.8 119 50.4
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 5.8e-16 87.8 108 51.9
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 7.6e-16 87.4 115 48.7
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 9.9e-16 87.0 115 47.8
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 9.9e-16 87.0 95 53.7
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 9.9e-16 87.0 99 52.5
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 1.3e-15 86.7 115 47.8
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 1.3e-15 86.7 108 51.9
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.7e-15 86.3 105 48.6
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 2.2e-15 85.9 123 54.5
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.2e-15 85.9 100 50.0
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.2e-15 85.9 114 47.4
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 3.8e-15 85.1 115 47.0
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.8e-15 85.1 92 53.3
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 4.9e-15 84.7 118 50.0
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 6.4e-15 84.3 112 49.1
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.4e-15 84.3 105 49.5
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 8.4e-15 84.0 102 51.0
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 1.1e-14 83.6 115 46.1
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 1.1e-14 83.6 115 46.1
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 1.1e-14 83.6 115 46.1
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 1.1e-14 83.6 95 52.6
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 1.1e-14 83.6 97 49.5
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 1.1e-14 83.6 110 51.8
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.4e-14 83.2 118 50.0
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 1.4e-14 83.2 119 45.4
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.4e-14 83.2 108 44.4
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 1.9e-14 82.8 110 49.1
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 1.9e-14 82.8 102 47.1
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 2.4e-14 82.4 100 49.0
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 3.2e-14 82.0 110 51.8
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 4.2e-14 81.6 110 49.1
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 4.2e-14 81.6 97 48.5
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 4.2e-14 81.6 109 48.6
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 7.1e-14 80.9 102 55.9
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-13 80.1 110 48.2
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 1.2e-13 80.1 104 47.1
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.6e-13 79.7 110 48.2
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.6e-13 79.7 105 45.7
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 1.6e-13 79.7 106 51.9
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.1e-13 79.3 104 47.1
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.1e-13 79.3 112 47.3
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 2.7e-13 79.0 110 46.4
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 3.5e-13 78.6 110 47.3
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 3.5e-13 78.6 98 44.9
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 4.6e-13 78.2 97 47.4
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 6.0e-13 77.8 115 45.2
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 7.9e-13 77.4 101 54.5
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.0e-12 77.0 112 47.3
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 1.0e-12 77.0 108 45.4
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.0e-12 77.0 113 47.8
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.3e-12 75.9 105 45.7
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 2.3e-12 75.9 100 52.0
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.9e-12 75.1 113 45.1
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 5.1e-12 74.7 100 42.0
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 5.1e-12 74.7 102 45.1
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 6.7e-12 74.3 108 43.5
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 6.7e-12 74.3 121 45.5
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 6.7e-12 74.3 102 45.1
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 8.7e-12 73.9 106 45.3
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 8.7e-12 73.9 106 49.1
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 8.7e-12 73.9 106 45.3
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 1.1e-11 73.6 111 44.1
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 1.5e-11 73.2 118 40.7
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 2.5e-11 72.4 124 49.2
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 3.3e-11 72.0 106 44.3
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 3.3e-11 72.0 106 46.2
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.3e-11 72.0 95 46.3
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 4.3e-11 71.6 95 46.3
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 4.3e-11 71.6 95 46.3
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 4.3e-11 71.6 95 46.3
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 5.6e-11 71.2 95 46.3
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.6e-11 71.2 93 47.3
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 7.4e-11 70.9 106 44.3
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 7.4e-11 70.9 82 50.0
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 9.6e-11 70.5 95 46.3
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 1.3e-10 70.1 112 40.2
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 1.6e-10 69.7 117 42.7
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.6e-10 69.7 95 45.3
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 2.8e-10 68.9 110 42.7
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 6.2e-10 67.8 93 46.2
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 6.2e-10 67.8 93 46.2
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.1e-09 67.0 112 42.0
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 1.8e-09 66.2 122 42.6
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 2.4e-09 65.9 109 42.2
FAN17G0281 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.3e-07 60.1 90 44.4
PGSC0003DMG400013448 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.3e-07 60.1 54 57.4
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 8.4e-07 57.4 105 37.1
ATR0680G398 Amborella trichopoda HOM05D003940 ORTHO05D004461 1.1e-06 57.0 101 41.6
unitig_33.g30216 Utricularia gibba HOM05D003940 ORTHO05D004461 4.2e-06 55.1 32 75.0


User provided reference genes

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