Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 6.5e-74 281.6 149 100.0
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 1.2e-67 260.8 149 91.9
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 2.0e-67 260.0 149 91.3
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 1.7e-66 256.9 149 91.3
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 1.9e-65 253.4 145 91.7
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 2.1e-64 250.0 149 87.9
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 2.1e-64 250.0 151 88.7
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 3.6e-64 249.2 149 86.6
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 8.0e-64 248.1 149 87.2
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 1.4e-63 247.3 151 87.4
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 1.8e-63 246.9 148 86.5
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 2.3e-63 246.5 151 86.8
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 5.2e-63 245.4 148 85.8
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 6.8e-63 245.0 146 87.7
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 1.2e-62 244.2 149 86.6
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 2.0e-62 243.4 149 85.9
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 2.0e-62 243.4 149 85.2
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 2.0e-62 243.4 148 84.5
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 3.4e-62 242.7 148 84.5
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 5.7e-62 241.9 149 85.9
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 9.8e-62 241.1 149 83.9
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 9.8e-62 241.1 150 85.3
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 9.8e-62 241.1 150 85.3
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 2.2e-61 240.0 149 83.2
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 2.2e-61 240.0 149 83.9
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 6.3e-61 238.4 149 83.9
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 8.3e-61 238.0 145 86.9
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 8.3e-61 238.0 149 85.9
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 8.3e-61 238.0 150 86.0
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 1.1e-60 237.7 149 85.2
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.4e-60 237.3 149 85.2
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 2.4e-60 236.5 149 83.2
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 4.1e-60 235.7 149 84.6
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 5.4e-60 235.3 149 85.2
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 5.4e-60 235.3 132 93.9
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 7.0e-60 235.0 143 88.1
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 9.1e-60 234.6 149 85.2
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 1.2e-59 234.2 136 90.4
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 1.2e-59 234.2 147 85.0
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 2.0e-59 233.4 149 82.6
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 2.0e-59 233.4 149 83.2
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 2.7e-59 233.0 150 82.0
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 2.7e-59 233.0 149 83.9
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 3.5e-59 232.6 152 84.2
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 3.5e-59 232.6 145 86.2
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 3.5e-59 232.6 145 86.2
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 4.5e-59 232.3 146 86.3
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 4.5e-59 232.3 145 82.8
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 4.5e-59 232.3 149 84.6
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 7.7e-59 231.5 149 81.9
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 1.3e-58 230.7 149 82.6
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 1.3e-58 230.7 149 83.2
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 2.3e-58 229.9 143 86.7
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 2.3e-58 229.9 147 83.0
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 2.9e-58 229.6 151 83.4
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 3.8e-58 229.2 149 83.2
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 5.0e-58 228.8 151 83.4
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 6.6e-58 228.4 150 84.0
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 6.6e-58 228.4 145 86.9
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 8.6e-58 228.0 145 86.2
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 8.6e-58 228.0 145 84.8
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 1.1e-57 227.6 148 84.5
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 1.1e-57 227.6 148 84.5
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.1e-57 227.6 149 83.2
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 1.1e-57 227.6 146 82.2
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 1.1e-57 227.6 151 82.8
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 1.1e-57 227.6 150 82.7
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 1.5e-57 227.3 151 82.8
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.9e-57 226.9 149 81.2
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 1.9e-57 226.9 151 84.1
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 1.9e-57 226.9 151 84.1
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 1.9e-57 226.9 151 84.1
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 2.5e-57 226.5 134 88.1
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 2.5e-57 226.5 149 83.2
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 3.3e-57 226.1 150 83.3
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 3.3e-57 226.1 150 83.3
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 3.3e-57 226.1 145 84.1
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 3.3e-57 226.1 151 83.4
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 3.3e-57 226.1 151 83.4
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 4.2e-57 225.7 133 88.0
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 4.2e-57 225.7 133 88.0
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 4.2e-57 225.7 151 80.8
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 5.5e-57 225.3 148 83.8
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 9.5e-57 224.6 146 84.2
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 9.5e-57 224.6 150 84.7
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 9.5e-57 224.6 145 82.8
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 9.5e-57 224.6 149 82.6
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 1.2e-56 224.2 149 81.2
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.2e-56 224.2 149 82.6
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 1.6e-56 223.8 148 81.8
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 2.1e-56 223.4 146 84.2
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 3.6e-56 222.6 145 82.1
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 4.7e-56 222.2 144 85.4
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 6.1e-56 221.9 149 81.2
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 8.0e-56 221.5 150 81.3
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 8.0e-56 221.5 149 81.2
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 1.4e-55 220.7 148 82.4
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 1.4e-55 220.7 133 87.2
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 1.4e-55 220.7 147 83.7
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.4e-55 220.7 147 83.0
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 1.4e-55 220.7 151 80.1
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 1.4e-55 220.7 143 83.2
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 1.8e-55 220.3 150 78.7
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 1.8e-55 220.3 152 80.9
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 4.0e-55 219.2 146 79.5
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 4.0e-55 219.2 141 84.4
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 6.8e-55 218.4 136 86.0
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 8.9e-55 218.0 150 81.3
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 8.9e-55 218.0 150 80.0
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 8.9e-55 218.0 137 85.4
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 8.9e-55 218.0 137 85.4
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 1.2e-54 217.6 148 81.8
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 1.2e-54 217.6 148 81.8
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 1.5e-54 217.2 149 81.9
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 1.5e-54 217.2 149 81.9
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 2.0e-54 216.9 149 77.9
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 5.7e-54 215.3 151 80.1
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 9.8e-54 214.5 149 78.5
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 1.3e-53 214.2 149 78.5
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 2.8e-53 213.0 150 78.7
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 4.9e-53 212.2 130 86.2
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 6.3e-53 211.8 144 84.0
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 6.3e-53 211.8 149 77.2
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 1.6e-51 207.2 149 77.2
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 5.0e-50 202.2 144 75.7
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 6.6e-50 201.8 136 81.6
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 1.2e-48 197.6 147 74.1
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 2.1e-48 196.8 147 72.1
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 2.8e-48 196.4 147 72.8
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 6.1e-48 195.3 147 74.8
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 4.0e-47 192.6 145 75.2
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 9.8e-46 188.0 146 75.3
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 7.0e-44 181.8 127 76.4
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 5.0e-42 175.6 138 68.1
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 2.5e-41 173.3 140 65.7
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 6.2e-40 168.7 115 82.6
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 5.2e-39 165.6 121 77.7
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 2.6e-38 163.3 146 66.4
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 8.6e-34 148.3 134 65.7
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 9.5e-33 144.8 113 69.9
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 2.1e-32 143.7 92 89.1
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 1.3e-29 134.4 128 57.8
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 1.7e-29 134.0 109 67.0
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 2.1e-27 127.1 113 67.3
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 9.5e-25 118.2 136 53.7
ATR1159G054 Amborella trichopoda HOM05D001765 ORTHO05D005876 2.4e-23 113.6 80 67.5
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 2.4e-23 113.6 108 59.3
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 3.4e-22 109.8 100 62.0
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 1.7e-21 107.5 151 51.7
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 4.2e-20 102.8 69 85.5
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 4.2e-20 102.8 69 85.5
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 3.5e-19 99.8 84 69.0
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 7.3e-17 92.0 66 84.8
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 6.2e-16 89.0 64 82.8
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 2.4e-15 87.0 72 69.4
Dinv15195 Davidia involucrata HOM05D002174 ORTHO05D005447 6.6e-10 68.9 39 87.2
Cre12.g529200 Chlamydomonas reinhardtii HOM05D001765 ORTHO05D005876 1.8e-07 60.8 47 53.2


User provided reference genes

Program Settings