Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1812 Cannabis sativa HOM05D012549 ORTHO05D013546 0.0e+00 1085.9 527 100.0
CANSAT78G0001 Cannabis sativa HOM05D012549 ORTHO05D013546 2.2e-150 536.6 451 61.9
CANSAT80G0415 Cannabis sativa HOM05D001729 ORTHO05D001155 1.1e-29 135.6 464 29.1
CANSAT21G1526 Cannabis sativa HOM05D012549 ORTHO05D013546 1.2e-28 132.1 464 28.9
CANSAT21G0540 Cannabis sativa HOM05D012549 ORTHO05D001155 4.0e-27 127.1 420 29.3
QL07p036134 Quercus lobata HOM05D001729 ORTHO05D001155 1.5e-26 125.2 458 28.8
CANSAT54G0181 Cannabis sativa HOM05D023019 ORTHO05D013546 1.3e-25 122.1 456 30.3
SGA_v2.0_scaffold80G25794 Striga asiatica HOM05D012549 ORTHO05D013546 1.3e-22 112.1 445 26.7
QL01p006048 Quercus lobata HOM05D001729 ORTHO05D001155 8.6e-22 109.4 455 26.8
QL07p036110 Quercus lobata HOM05D001729 ORTHO05D001155 1.1e-21 109.0 401 30.4
SGA_v2.0_scaffold98G29332 Striga asiatica HOM05D012549 ORTHO05D013546 1.5e-21 108.6 441 26.8
SGA_v2.0_scaffold94G28510 Striga asiatica HOM05D012549 ORTHO05D013546 3.6e-20 104.0 440 25.5
QL07p036156 Quercus lobata HOM05D001729 ORTHO05D001155 4.7e-20 103.6 494 26.7
SGA_v2.0_scaffold98G29336 Striga asiatica HOM05D012549 ORTHO05D013546 4.7e-20 103.6 441 26.1
QL08p043319 Quercus lobata HOM05D001729 ORTHO05D001155 8.1e-20 102.8 463 28.1
SGA_v2.0_scaffold80G25772 Striga asiatica HOM05D012549 ORTHO05D013546 8.1e-20 102.8 454 24.4
PGSC0003DMG400005639 Solanum tuberosum HOM05D001729 ORTHO05D001155 1.1e-19 102.4 447 24.6
RcHm_v2.0_Chr6g0292271 Rosa chinensis HOM05D001729 ORTHO05D001155 6.8e-19 99.8 448 27.0
AUR62035624 Chenopodium quinoa HOM05D001729 ORTHO05D001155 3.4e-18 97.4 444 28.2
SGA_v2.0_scaffold80G25855 Striga asiatica HOM05D012549 ORTHO05D013546 3.4e-18 97.4 452 24.8
QL07p019801 Quercus lobata HOM05D001729 ORTHO05D001155 7.6e-18 96.3 463 25.9
QL08p043324 Quercus lobata HOM05D001729 ORTHO05D001155 9.9e-18 95.9 468 26.5
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 1.3e-17 95.5 482 25.3
QL07p036320 Quercus lobata HOM05D001729 ORTHO05D001155 1.7e-17 95.1 513 25.1
SGA_v2.0_scaffold199G41212 Striga asiatica HOM05D012549 ORTHO05D013546 1.7e-17 95.1 449 24.3
Rhsim08G0238800 Rhododendron simsii HOM05D001729 ORTHO05D001155 2.2e-17 94.7 439 23.9
TAR625G1137 Trochodendron aralioides HOM05D001729 ORTHO05D001155 2.9e-17 94.4 477 28.7
AUR62006002 Chenopodium quinoa HOM05D001729 ORTHO05D001155 1.4e-16 92.0 437 26.8
FAN14G2874 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.4e-16 92.0 465 24.3
FvH4_2g24261 Fragaria vesca HOM05D001729 ORTHO05D001155 3.2e-16 90.9 442 24.4
FvH4_6g01541 Fragaria vesca HOM05D001729 ORTHO05D001155 7.1e-16 89.7 465 24.3
MD09G1201600 Malus domestica HOM05D001729 ORTHO05D001155 7.8e-15 86.3 449 25.4
HanXRQChr15g0474331 Helianthus annuus HOM05D008898 ORTHO05D001155 2.3e-14 84.7 433 25.4
Rhsim08G0237800 Rhododendron simsii HOM05D001729 ORTHO05D001155 3.0e-14 84.3 440 25.0
FAN14G0866 Fragaria x ananassa HOM05D001729 ORTHO05D001155 3.9e-14 84.0 472 23.1
SGA_v2.0_scaffold386G50500 Striga asiatica HOM05D023019 ORTHO05D013546 5.1e-14 83.6 412 25.5
FAN05G0208 Fragaria x ananassa HOM05D001729 ORTHO05D001155 6.6e-14 83.2 473 26.4
QL02p054283 Quercus lobata HOM05D001729 ORTHO05D001155 1.9e-13 81.6 448 23.9
Lsat_1_v5_gn_0_16480 Lactuca sativa HOM05D008898 ORTHO05D001155 2.5e-13 81.3 333 25.2
PGSC0003DMG400005638 Solanum tuberosum HOM05D001729 ORTHO05D001155 3.3e-13 80.9 427 23.9
CSS0028413 Camellia sinensis var. sinensis HOM05D008898 ORTHO05D001155 5.6e-13 80.1 452 26.1
FvH4_3g44471 Fragaria vesca HOM05D001729 ORTHO05D001155 5.6e-13 80.1 479 23.8
Medtr4g124160 Medicago truncatula HOM05D001729 ORTHO05D001155 5.6e-13 80.1 397 25.7
Atru.chr9.1050 Acer truncatum HOM05D006807 ORTHO05D008528 7.3e-13 79.7 455 25.3
QL05p052800 Quercus lobata HOM05D001729 ORTHO05D001155 7.3e-13 79.7 471 22.7
QL06p006093 Quercus lobata HOM05D001729 ORTHO05D001155 9.6e-13 79.3 521 23.0
CSS0020895 Camellia sinensis var. sinensis HOM05D008898 ORTHO05D001155 1.2e-12 79.0 452 25.9
COL.COLO4_30694 Corchorus olitorius HOM05D001729 ORTHO05D001155 1.6e-12 78.6 400 26.5
FAN02G0048 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.6e-12 78.6 470 22.6
FAN05G1447 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.6e-12 78.6 445 24.0
FAN14G1187 Fragaria x ananassa HOM05D001729 ORTHO05D001155 2.1e-12 78.2 397 24.9
Dinv35017 Davidia involucrata HOM05D008898 ORTHO05D001155 2.8e-12 77.8 442 26.5
SGA_v2.0_scaffold386G50502 Striga asiatica HOM05D023019 ORTHO05D013546 2.8e-12 77.8 351 26.5
FAN27G2714 Fragaria x ananassa HOM05D001115 ORTHO05D001023 3.6e-12 77.4 440 25.0
Lj4g0002979 Lotus japonicus HOM05D001729 ORTHO05D001155 3.6e-12 77.4 399 26.1
RcHm_v2.0_Chr3g0449911 Rosa chinensis HOM05D001729 ORTHO05D001155 4.7e-12 77.0 453 23.6
RcHm_v2.0_Chr6g0275871 Rosa chinensis HOM05D001729 ORTHO05D001155 8.1e-12 76.3 473 23.3
FAN15G1054 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.8e-11 75.1 454 24.0
Sabra09G0102700 Salix brachista HOM05D001729 ORTHO05D001155 4.0e-11 73.9 480 22.9
Rhsim08G0219900 Rhododendron simsii HOM05D001729 ORTHO05D001155 5.2e-11 73.6 446 24.7
SGA_v2.0_scaffold56G20030 Striga asiatica HOM05D023019 ORTHO05D013546 6.8e-11 73.2 362 26.5
Sc19g0000590 Simmondsia chinensis HOM05D001729 ORTHO05D001155 8.9e-11 72.8 450 23.6
FvH4_6g02171 Fragaria vesca HOM05D001729 ORTHO05D001155 1.2e-10 72.4 447 24.4
Sabra15G0014700 Salix brachista HOM05D001729 ORTHO05D001155 1.5e-10 72.0 460 27.0
FvH4_6g03221 Fragaria vesca HOM05D001729 ORTHO05D001155 2.0e-10 71.6 325 27.1
MD02G1008900 Malus domestica HOM05D001729 ORTHO05D001155 2.0e-10 71.6 474 21.1
Lsat_1_v5_gn_6_92061 Lactuca sativa HOM05D001729 ORTHO05D001155 3.4e-10 70.9 441 23.8
Potri.011G000700 Populus trichocarpa HOM05D001729 ORTHO05D001155 3.4e-10 70.9 461 24.7
FAN11G2672 Fragaria x ananassa HOM05D001729 ORTHO05D001155 4.4e-10 70.5 384 24.0
Potri.009G132400 Populus trichocarpa HOM05D001729 ORTHO05D001155 5.8e-10 70.1 451 23.3
RcHm_v2.0_Chr2g0151111 Rosa chinensis HOM05D001729 ORTHO05D001155 5.8e-10 70.1 362 26.2
Duzib177G1156 Durio zibethinus HOM05D000664 ORTHO05D000491 7.6e-10 69.7 311 24.8
FvH4_2g19920 Fragaria vesca HOM05D001729 ORTHO05D001155 7.6e-10 69.7 440 23.4
FAN09G4239 Fragaria x ananassa HOM05D001729 ORTHO05D001155 7.6e-10 69.7 322 26.7
FAN24G2147 Fragaria x ananassa HOM05D001729 ORTHO05D001155 7.6e-10 69.7 440 23.4
FAN14G5781 Fragaria x ananassa HOM05D001729 ORTHO05D001155 9.9e-10 69.3 380 22.4
PSO421G0629 Papaver somniferum HOM05D000007 ORTHO05D000676 9.9e-10 69.3 258 27.9
Prupe.3G246100 Prunus persica HOM05D001729 ORTHO05D001155 9.9e-10 69.3 496 22.8
Ah.10g030210 Amaranthus hybridus HOM05D021952 ORTHO05D021205 1.3e-09 68.9 481 22.7
Prupe.4G053600 Prunus persica HOM05D001729 ORTHO05D001155 1.3e-09 68.9 372 27.4
COL.COLO4_32997 Corchorus olitorius HOM05D000664 ORTHO05D000491 1.7e-09 68.6 245 29.0
FvH4_6g46241 Fragaria vesca HOM05D001729 ORTHO05D001155 2.2e-09 68.2 238 30.7
HanXRQChr15g0474381 Helianthus annuus HOM05D008898 ORTHO05D001155 2.2e-09 68.2 379 24.5
Lj2A946T25 Lonicera japonica HOM05D001729 ORTHO05D001155 2.2e-09 68.2 339 26.5
RcHm_v2.0_Chr7g0221261 Rosa chinensis HOM05D001729 ORTHO05D001155 2.9e-09 67.8 451 22.2
RcHm_v2.0_Chr6g0276071 Rosa chinensis HOM05D001729 ORTHO05D001155 4.9e-09 67.0 262 26.0
AUR62035625 Chenopodium quinoa HOM05D001729 ORTHO05D001155 6.4e-09 66.6 411 23.8
COL.COLO4_34020 Corchorus olitorius HOM05D001729 ORTHO05D001155 6.4e-09 66.6 305 30.8
FvH4_6g45890 Fragaria vesca HOM05D001729 ORTHO05D001155 6.4e-09 66.6 272 26.1
FAN14G3193 Fragaria x ananassa HOM05D001729 ORTHO05D001155 6.4e-09 66.6 272 26.1
Prupe.3G059500 Prunus persica HOM05D001729 ORTHO05D001155 6.4e-09 66.6 461 23.6
RcHm_v2.0_Chr2g0123691 Rosa chinensis HOM05D001729 ORTHO05D001155 6.4e-09 66.6 266 25.6
RcHm_v2.0_Chr6g0291931 Rosa chinensis HOM05D001729 ORTHO05D001155 1.1e-08 65.9 435 24.4
Sabra09G0127200 Salix brachista HOM05D001729 ORTHO05D001155 1.1e-08 65.9 433 25.4
FAN16G0249 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.4e-08 65.5 286 26.9
Duzib177G1102 Durio zibethinus HOM05D000664 ORTHO05D000491 2.4e-08 64.7 258 25.6
FAN01G0708 Fragaria x ananassa HOM05D001729 ORTHO05D001155 2.4e-08 64.7 265 27.2
QL05p012589 Quercus lobata HOM05D001729 ORTHO05D001155 2.4e-08 64.7 442 23.5
Thecc.03G222100 Theobroma cacao HOM05D001729 ORTHO05D001155 3.2e-08 64.3 470 23.6
FAN11G1727 Fragaria x ananassa HOM05D001729 ORTHO05D001155 4.2e-08 63.9 449 23.4
FvH4_6g46260 Fragaria vesca HOM05D001729 ORTHO05D001155 5.4e-08 63.5 474 21.9
MD02G1008700 Malus domestica HOM05D001729 ORTHO05D001155 5.4e-08 63.5 273 22.7
CAN.G46.3 Capsicum annuum HOM05D000007 ORTHO05D000039 7.1e-08 63.2 253 26.1
CDE06G0907 Ceratophyllum demersum HOM05D000855 ORTHO05D000491 7.1e-08 63.2 412 23.5
FvH4_3g44510 Fragaria vesca HOM05D001729 ORTHO05D001155 7.1e-08 63.2 456 23.0
PSO333G0040 Papaver somniferum HOM05D008326 ORTHO05D001155 7.1e-08 63.2 307 26.4
Thecc.05G238100 Theobroma cacao HOM05D000664 ORTHO05D000491 9.3e-08 62.8 301 25.2
FvH4_6g45251 Fragaria vesca HOM05D001729 ORTHO05D001155 1.2e-07 62.4 500 22.4
FAN09G2757 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.2e-07 62.4 260 27.3
FAN14G1727 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.2e-07 62.4 260 27.3
FAN14G2361 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.2e-07 62.4 330 26.4
FAN16G2506 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.2e-07 62.4 273 27.1
HanXRQChr03g0067811 Helianthus annuus HOM05D000664 ORTHO05D000491 1.2e-07 62.4 305 26.9
FvH4_6g39371 Fragaria vesca HOM05D001729 ORTHO05D001155 1.6e-07 62.0 260 27.3
Sabra11G0003700 Salix brachista HOM05D001729 ORTHO05D001155 1.6e-07 62.0 263 28.5
SGA_v2.0_scaffold1G00575 Striga asiatica HOM05D001729 ORTHO05D001155 1.6e-07 62.0 308 23.7
FvH4_6g46240 Fragaria vesca HOM05D001729 ORTHO05D001155 2.1e-07 61.6 257 23.3
PSO541G4811 Papaver somniferum HOM05D008326 ORTHO05D001155 2.1e-07 61.6 393 23.4
Prupe.6G075500 Prunus persica HOM05D001729 ORTHO05D001155 2.1e-07 61.6 276 25.7
QL05p008212 Quercus lobata HOM05D001729 ORTHO05D001155 2.1e-07 61.6 347 24.2
Aqoxy7G01704 Aquilegia oxysepala HOM05D015194 ORTHO05D010440 2.7e-07 61.2 301 25.2
FvH4_6g46242 Fragaria vesca HOM05D001729 ORTHO05D001155 2.7e-07 61.2 227 29.1
FAN02G3094 Fragaria x ananassa HOM05D001729 ORTHO05D001155 2.7e-07 61.2 278 25.5
QL05p074174 Quercus lobata HOM05D001729 ORTHO05D001155 2.7e-07 61.2 435 23.2
Lj8C33T14 Lonicera japonica HOM05D000664 ORTHO05D000491 3.5e-07 60.8 327 26.9
FvH4_7g31431 Fragaria vesca HOM05D001729 ORTHO05D001155 4.6e-07 60.5 273 27.1
FAN05G2911 Fragaria x ananassa HOM05D001729 ORTHO05D001155 4.6e-07 60.5 272 26.1
Carub.0006s0291 Capsella rubella HOM05D007779 ORTHO05D009863 6.0e-07 60.1 343 26.5
FvH4_4g18120 Fragaria vesca HOM05D001729 ORTHO05D001155 6.0e-07 60.1 271 26.6
FvH4_6g45291 Fragaria vesca HOM05D001729 ORTHO05D001155 6.0e-07 60.1 449 22.7
FAN14G0421 Fragaria x ananassa HOM05D001729 ORTHO05D001155 6.0e-07 60.1 449 22.9
PSO161G0051 Papaver somniferum HOM05D008326 ORTHO05D001155 6.0e-07 60.1 367 26.7
Prupe.1G509300 Prunus persica HOM05D001729 ORTHO05D001155 6.0e-07 60.1 477 21.6
Aqoxy7G01734 Aquilegia oxysepala HOM05D015194 ORTHO05D010440 7.8e-07 59.7 360 24.4
Manes.01G166900 Manihot esculenta HOM05D000664 ORTHO05D000491 7.8e-07 59.7 332 25.6
FAN06G0675 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.0e-06 59.3 273 26.7
FAN06G3231 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.0e-06 59.3 273 26.7
PSO675G0549 Papaver somniferum HOM05D000007 ORTHO05D000017 1.0e-06 59.3 285 27.0
Potri.011G004800 Populus trichocarpa HOM05D001729 ORTHO05D001155 1.0e-06 59.3 276 27.2
QL06p001056 Quercus lobata HOM05D001729 ORTHO05D001155 1.0e-06 59.3 235 24.7
Aqoxy5G01770 Aquilegia oxysepala HOM05D000664 ORTHO05D009863 1.3e-06 58.9 251 27.5
Hma1.2p1_0178F.1_g078390 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 1.3e-06 58.9 343 26.2
CANSAT78G1184 Cannabis sativa HOM05D007162 ORTHO05D007631 1.7e-06 58.5 293 25.3
CDE04G2855 Ceratophyllum demersum HOM05D000664 ORTHO05D000491 1.7e-06 58.5 305 24.9
Duzib177G1036 Durio zibethinus HOM05D000664 ORTHO05D000491 1.7e-06 58.5 256 25.4
QL07p036147 Quercus lobata HOM05D001729 ORTHO05D001155 1.7e-06 58.5 237 25.7
FAN05G4264 Fragaria x ananassa HOM05D001526 ORTHO05D001417 2.3e-06 58.2 227 27.3
Lsat_1_v5_gn_4_183980 Lactuca sativa HOM05D002420 ORTHO05D002422 2.3e-06 58.2 283 27.2
PSO541G3853 Papaver somniferum HOM05D000007 ORTHO05D000017 2.3e-06 58.2 364 23.1
FvH4_6g46280 Fragaria vesca HOM05D001729 ORTHO05D001155 3.0e-06 57.8 227 26.9
FAN08G2539 Fragaria x ananassa HOM05D001729 ORTHO05D001155 3.0e-06 57.8 301 22.9
Lalb_Chr04g0264551 Lupinus albus HOM05D012242 ORTHO05D001155 3.0e-06 57.8 388 21.4
Prupe.1G510700 Prunus persica HOM05D001729 ORTHO05D001155 3.0e-06 57.8 282 23.8
QL08p014547 Quercus lobata HOM05D001729 ORTHO05D001155 3.0e-06 57.8 219 23.3
FAN06G0177 Fragaria x ananassa HOM05D001729 ORTHO05D001155 3.9e-06 57.4 451 24.4
FAN12G2308 Fragaria x ananassa HOM05D001729 ORTHO05D001155 3.9e-06 57.4 271 25.1
FAN20G1095 Fragaria x ananassa HOM05D001729 ORTHO05D001155 3.9e-06 57.4 237 30.0
FvH4_3g30171 Fragaria vesca HOM05D001729 ORTHO05D001155 5.1e-06 57.0 262 25.6
Potri.003G215900 Populus trichocarpa HOM05D000664 ORTHO05D000491 5.1e-06 57.0 269 27.5
FAN06G3932 Fragaria x ananassa HOM05D001729 ORTHO05D001155 6.6e-06 56.6 445 23.8
Thecc.05G282300 Theobroma cacao HOM05D000664 ORTHO05D000491 6.6e-06 56.6 341 24.0
Dinv34857 Davidia involucrata HOM05D001729 ORTHO05D001155 8.7e-06 56.2 256 27.7
FvH4_4g16921 Fragaria vesca HOM05D001729 ORTHO05D001155 8.7e-06 56.2 271 24.7
FAN09G2884 Fragaria x ananassa HOM05D020628 ORTHO05D001155 8.7e-06 56.2 458 20.7
FAN11G0139 Fragaria x ananassa HOM05D001729 ORTHO05D001155 8.7e-06 56.2 269 25.3
MBI01_g31985_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 8.7e-06 56.2 231 27.7


User provided reference genes

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