Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 4.0e-87 324.7 163 100.0
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 7.7e-70 267.3 160 80.6
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 1.0e-69 266.9 160 81.9
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 1.0e-69 266.9 160 80.6
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 3.8e-69 265.0 160 80.0
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 6.5e-69 264.2 154 82.5
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 8.5e-69 263.8 156 82.7
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 1.1e-68 263.5 154 82.5
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 1.1e-68 263.5 154 83.1
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 2.5e-68 262.3 160 80.6
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 3.2e-68 261.9 149 85.2
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 4.2e-68 261.5 154 81.2
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 4.2e-68 261.5 160 78.8
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 9.4e-68 260.4 154 81.8
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 1.2e-67 260.0 156 80.1
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 2.1e-67 259.2 156 82.7
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 2.7e-67 258.8 158 80.4
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 3.6e-67 258.5 159 79.9
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 3.6e-67 258.5 159 79.9
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 4.6e-67 258.1 156 81.4
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 6.1e-67 257.7 160 79.4
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 2.3e-66 255.8 162 77.2
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 2.3e-66 255.8 160 77.5
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 3.0e-66 255.4 158 79.7
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 3.0e-66 255.4 158 79.1
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 6.7e-66 254.2 154 79.9
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 8.8e-66 253.8 156 79.5
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 8.8e-66 253.8 154 81.2
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 8.8e-66 253.8 160 75.0
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 8.8e-66 253.8 158 78.5
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 1.5e-65 253.1 156 80.1
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 2.0e-65 252.7 152 80.9
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 2.0e-65 252.7 156 79.5
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 2.0e-65 252.7 159 78.0
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 2.5e-65 252.3 157 79.0
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 2.5e-65 252.3 154 81.2
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 2.5e-65 252.3 158 77.2
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 3.3e-65 251.9 156 78.8
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 3.3e-65 251.9 156 78.8
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 4.3e-65 251.5 160 78.1
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 5.7e-65 251.1 159 76.7
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 7.4e-65 250.8 156 78.8
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 9.7e-65 250.4 158 79.1
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 9.7e-65 250.4 154 80.5
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 9.7e-65 250.4 159 76.1
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 1.7e-64 249.6 151 79.5
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 1.7e-64 249.6 150 78.7
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 1.7e-64 249.6 156 78.2
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 3.7e-64 248.4 159 76.7
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 3.7e-64 248.4 162 73.5
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 3.7e-64 248.4 162 73.5
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 1.1e-63 246.9 151 80.1
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 1.8e-63 246.1 150 80.0
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 2.4e-63 245.7 160 75.0
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 3.1e-63 245.4 154 79.9
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 3.1e-63 245.4 160 75.6
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 1.2e-62 243.4 147 78.2
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 1.2e-62 243.4 150 78.7
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 1.5e-62 243.0 154 76.6
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 1.5e-62 243.0 154 76.0
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 1.5e-62 243.0 154 76.0
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 2.0e-62 242.7 156 75.0
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 2.0e-62 242.7 156 76.9
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 2.0e-62 242.7 157 76.4
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 4.5e-62 241.5 146 78.1
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 4.5e-62 241.5 154 76.6
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 1.0e-61 240.4 147 80.3
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 1.3e-61 240.0 146 78.8
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 1.7e-61 239.6 158 73.4
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 2.2e-61 239.2 156 73.1
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 2.2e-61 239.2 156 75.6
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 6.5e-61 237.7 157 74.5
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 6.5e-61 237.7 157 74.5
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 6.5e-61 237.7 146 78.8
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 8.5e-61 237.3 157 74.5
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 8.5e-61 237.3 157 73.2
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 8.5e-61 237.3 157 73.2
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 1.1e-60 236.9 157 73.9
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 1.1e-60 236.9 157 74.5
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 3.2e-60 235.3 157 73.9
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 4.2e-60 235.0 157 73.2
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 4.2e-60 235.0 139 81.3
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 1.2e-59 233.4 157 72.0
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 1.6e-59 233.0 157 72.0
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 2.7e-59 232.3 149 75.8
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 2.7e-59 232.3 157 72.0
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 4.7e-59 231.5 183 66.7
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 1.0e-58 230.3 147 77.6
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 3.9e-58 228.4 156 70.5
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 5.1e-58 228.0 147 74.8
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 2.0e-57 226.1 156 67.3
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 2.2e-56 222.6 190 63.7
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.4e-55 219.9 156 71.2
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 3.5e-54 215.3 178 63.5
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 2.2e-53 212.6 154 69.5
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 1.4e-50 203.4 165 63.6
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 1.5e-49 199.9 149 64.4
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 1.0e-45 187.2 152 60.5
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 9.4e-44 180.6 119 73.1
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 2.3e-42 176.0 148 62.2
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 3.0e-42 175.6 112 76.8
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 8.8e-42 174.1 157 55.4
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 2.2e-40 169.5 91 87.9
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 1.8e-39 166.4 91 84.6
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 2.0e-38 162.9 113 70.8
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 1.0e-37 160.6 162 50.0
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 1.0e-37 160.6 158 58.9
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 1.6e-35 153.3 157 51.0
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 4.7e-35 151.8 263 38.8
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 1.5e-33 146.7 154 48.1
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 1.9e-28 129.8 83 74.7
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 2.5e-28 129.4 140 45.7
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 6.6e-21 104.8 74 70.3
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.8e-18 96.7 67 71.6
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 6.4e-16 88.2 64 67.2
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 7.0e-15 84.7 92 48.9
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 1.6e-14 83.6 49 75.5
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 4.6e-14 82.0 55 72.7
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 1.3e-13 80.5 45 82.2
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 2.1e-11 73.2 135 34.8
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 1.1e-10 70.9 37 89.2
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 6.8e-10 68.2 37 83.8
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 8.3e-08 61.2 48 66.7


User provided reference genes

Program Settings