Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 6.4e-188 660.6 338 100.0
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 6.9e-49 198.7 380 39.2
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 1.7e-42 177.6 387 37.0
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 6.9e-41 172.2 384 33.1
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.9e-38 164.1 392 35.2
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 2.1e-37 160.6 381 34.1
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 8.0e-37 158.7 365 35.3
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 2.3e-36 157.1 384 35.7
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.3e-34 151.4 378 34.1
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.4e-33 147.9 366 34.7
Glyma.09G051600 Glycine max HOM05D005863 ORTHO05D003355 1.6e-32 144.4 403 32.3
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 2.2e-31 140.6 361 33.0
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 6.5e-31 139.0 365 34.0
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 8.5e-31 138.7 389 30.3
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.5e-30 137.9 361 30.7
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 1.9e-30 137.5 339 34.5
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 5.5e-30 136.0 376 32.2
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 2.1e-29 134.0 368 31.0
Lj6g0020676 Lotus japonicus HOM05D005863 ORTHO05D003355 4.7e-29 132.9 372 32.0
VMungo1309G2065 Vigna mungo HOM05D001598 ORTHO05D002757 2.3e-28 130.6 388 31.2
Glyma.15G157900 Glycine max HOM05D005863 ORTHO05D003355 2.6e-27 127.1 259 36.7
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 5.7e-27 125.9 321 33.0
Dinv10342 Davidia involucrata HOM05D005863 ORTHO05D003355 2.2e-26 124.0 331 33.5
Psat1g149600 Pisum sativum HOM05D005863 ORTHO05D003355 3.7e-26 123.2 379 30.3
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 1.4e-25 121.3 253 35.2
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 1.8e-25 120.9 355 30.7
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 1.2e-24 118.2 88 59.1
CsaV3_7G011440 Cucumis sativus L. HOM05D031146 ORTHO05D003355 7.7e-24 115.5 367 32.7
arahy.Tifrunner.gnm1.ann1.11ED70 Arachis hypogaea HOM05D005863 ORTHO05D003355 1.5e-22 111.3 350 30.9
AT1G55865 Arabidopsis thaliana HOM05D012516 ORTHO05D003355 5.5e-22 109.4 94 54.3
Carub.0001s4444 Capsella rubella HOM05D012516 ORTHO05D003355 7.2e-22 109.0 152 41.4
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 7.2e-22 109.0 89 57.3
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 1.2e-21 108.2 360 30.3
Medtr2g036070 Medicago truncatula HOM05D005863 ORTHO05D003355 2.7e-21 107.1 310 30.3
Ca_02000_v3 Cicer arietinum L. HOM05D005863 ORTHO05D003355 4.7e-21 106.3 374 29.9
ClCG09G021400 Citrullus lanatus HOM05D031146 ORTHO05D003355 4.7e-21 106.3 377 30.5
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 6.1e-21 105.9 104 50.0
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 8.0e-21 105.5 85 55.3
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 1.0e-20 105.1 332 30.1
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 1.0e-20 105.1 338 29.9
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.8e-20 104.4 342 30.4
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.8e-20 104.4 396 25.8
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 1.8e-20 104.4 85 55.3
AL1G63990 Arabidopsis lyrata HOM05D012516 ORTHO05D003355 2.3e-20 104.0 249 32.5
Hund23103 Selenicereus undatus HOM05D005863 ORTHO05D003355 3.0e-20 103.6 374 29.7
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 3.0e-20 103.6 115 47.0
CARHR045560 Cardamine hirsuta HOM05D000747 ORTHO05D001683 4.0e-20 103.2 123 42.3
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 4.0e-20 103.2 104 49.0
Sed0025324 Sechium edule HOM05D031146 ORTHO05D003355 4.0e-20 103.2 370 28.4
TPR.G1700 Trifolium pratense HOM05D005863 ORTHO05D003355 6.8e-20 102.4 388 27.8
arahy.Tifrunner.gnm1.ann1.9BU9L2 Arachis hypogaea HOM05D005863 ORTHO05D003355 1.2e-19 101.7 350 28.0
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 2.6e-19 100.5 313 28.1
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 7.5e-19 99.0 336 27.1
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 9.8e-19 98.6 87 51.7
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 1.3e-18 98.2 332 29.2
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 3.7e-18 96.7 250 31.2
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 4.8e-18 96.3 92 51.1
C06p16270 Brassica napus HOM05D012516 ORTHO05D003355 8.3e-18 95.5 106 45.3
BolC6t36826H Brassica oleracea HOM05D012516 ORTHO05D003355 8.3e-18 95.5 106 45.3
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 1.1e-17 95.1 113 43.4
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 1.8e-17 94.4 374 27.3
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 3.1e-17 93.6 81 54.3
BcaC08g44222 Brassica carinata HOM05D012516 ORTHO05D003355 4.1e-17 93.2 106 45.3
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 9.1e-17 92.0 108 43.5
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 1.2e-16 91.7 90 50.0
Nitab4.5_0006876g0020 Nicotiana tabacum HOM05D005863 ORTHO05D003355 1.2e-16 91.7 85 49.4
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 2.0e-16 90.9 87 48.3
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 7.7e-16 89.0 161 38.5
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.3e-15 88.2 140 38.6
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 1.7e-15 87.8 351 27.4
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 2.9e-15 87.0 82 48.8
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 3.8e-15 86.7 88 44.3
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 1.5e-14 84.7 239 29.7
Haze_09834 Corylus avellana HOM05D014719 ORTHO05D003355 3.3e-14 83.6 215 33.5
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 8.0e-13 79.0 81 45.7
FAN23G2175 Fragaria x ananassa HOM05D014719 ORTHO05D003355 3.0e-12 77.0 87 43.7
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 4.0e-12 76.6 87 39.1
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 4.0e-12 76.6 86 44.2
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 5.2e-12 76.3 87 40.2
Phvul.009G242100 Phaseolus vulgaris HOM05D005863 ORTHO05D003355 6.8e-12 75.9 320 26.9
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 6.8e-12 75.9 86 43.0
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 8.9e-12 75.5 97 36.1
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 8.9e-12 75.5 85 42.4
Rhsim10G0199200 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.2e-11 75.1 59 50.8
Rhsim10G0199400 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.0e-11 74.3 58 51.7
Aa31LG10G330 Aethionema arabicum HOM05D000747 ORTHO05D001683 2.6e-11 73.9 118 36.4
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 2.6e-11 73.9 87 37.9
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 3.4e-11 73.6 80 38.8
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 3.4e-11 73.6 83 42.2
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 4.4e-11 73.2 90 41.1
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 4.4e-11 73.2 88 40.9
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 5.7e-11 72.8 84 40.5
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 5.7e-11 72.8 127 30.7
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 7.5e-11 72.4 81 39.5
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 7.5e-11 72.4 86 43.0
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 7.5e-11 72.4 92 42.4
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 7.5e-11 72.4 114 36.8
Duzib213G0291 Durio zibethinus HOM05D005863 ORTHO05D003355 9.8e-11 72.0 325 25.2
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 1.3e-10 71.6 112 33.0
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 1.3e-10 71.6 90 42.2
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 1.3e-10 71.6 83 37.3
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 1.7e-10 71.2 97 37.1
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.7e-10 71.2 345 26.4
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.2e-10 70.9 81 37.0
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 2.2e-10 70.9 86 39.5
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 2.8e-10 70.5 90 35.6
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 2.8e-10 70.5 145 33.1
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 3.7e-10 70.1 90 42.2
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 3.7e-10 70.1 90 41.1
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 3.7e-10 70.1 81 35.8
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 3.7e-10 70.1 81 35.8
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 3.7e-10 70.1 83 37.3
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 4.9e-10 69.7 81 42.0
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 4.9e-10 69.7 84 40.5
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 4.9e-10 69.7 81 40.7
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 4.9e-10 69.7 84 41.7
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 6.3e-10 69.3 86 39.5
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 6.3e-10 69.3 83 41.0
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 6.3e-10 69.3 86 40.7
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 1.1e-09 68.6 86 37.2
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 1.4e-09 68.2 163 34.4
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 1.4e-09 68.2 162 29.0
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.8e-09 67.8 143 29.4
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.8e-09 67.8 84 36.9
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.8e-09 67.8 83 34.9
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 2.4e-09 67.4 81 39.5
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 2.4e-09 67.4 82 39.0
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 2.4e-09 67.4 90 37.8
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 2.4e-09 67.4 83 38.6
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 2.4e-09 67.4 81 35.8
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 3.1e-09 67.0 81 39.5
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 3.1e-09 67.0 81 35.8
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 3.1e-09 67.0 83 34.9
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 4.1e-09 66.6 80 40.0
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 5.4e-09 66.2 89 37.1
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 7.0e-09 65.9 111 36.0
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 7.0e-09 65.9 86 39.5
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 9.2e-09 65.5 81 38.3
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 9.2e-09 65.5 95 33.7
FAN19G1520 Fragaria x ananassa HOM05D014719 ORTHO05D003355 1.2e-08 65.1 87 39.1
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 1.2e-08 65.1 83 37.3
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.6e-08 64.7 83 28.9
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.6e-08 64.7 86 33.7
Manes.02G222900 Manihot esculenta HOM05D005863 ORTHO05D003355 2.0e-08 64.3 325 25.8
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 2.0e-08 64.3 92 34.8
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 2.0e-08 64.3 83 37.3
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 2.7e-08 63.9 258 25.6
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 3.5e-08 63.5 95 33.7
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 3.5e-08 63.5 81 38.3
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 3.5e-08 63.5 197 26.4
FAN26G0704 Fragaria x ananassa HOM05D014719 ORTHO05D003355 4.5e-08 63.2 63 46.0
FAN28G3008 Fragaria x ananassa HOM05D014719 ORTHO05D003355 5.9e-08 62.8 63 46.0
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 5.9e-08 62.8 83 34.9
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 5.9e-08 62.8 79 39.2
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 7.8e-08 62.4 90 35.6
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.0e-07 62.0 90 34.4
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 1.3e-07 61.6 91 38.5
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 1.3e-07 61.6 91 38.5
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 1.3e-07 61.6 81 39.5
ECA236G3808 Erigeron canadensis HOM05D000747 ORTHO05D001683 1.7e-07 61.2 51 51.0
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 2.3e-07 60.8 90 37.8
SEGI_35034 Sequoiadendron giganteum HOM05D005863 ORTHO05D003355 3.8e-07 60.1 152 28.3
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 5.0e-07 59.7 91 37.4
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 5.0e-07 59.7 91 37.4
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 5.0e-07 59.7 80 38.8
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 5.0e-07 59.7 219 26.0
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 3.3e-06 57.0 52 48.1
AUR62036468 Chenopodium quinoa HOM05D038882 ORTHO05D003355 3.3e-06 57.0 297 25.6
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 4.3e-06 56.6 326 23.3
COL.COLO4_09843 Corchorus olitorius HOM05D005863 ORTHO05D003355 5.6e-06 56.2 266 26.7


User provided reference genes

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