Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 5.9e-267 923.7 492 100.0
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 1.1e-106 391.3 505 48.9
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 1.5e-105 387.5 511 49.9
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 9.9e-105 384.8 498 49.8
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 4.2e-103 379.4 510 50.8
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 4.2e-103 379.4 505 50.1
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 2.8e-99 366.7 518 49.0
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 6.2e-99 365.5 508 50.8
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 6.2e-99 365.5 485 50.1
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 1.3e-96 357.8 516 47.1
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.1e-94 350.5 534 45.3
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 1.3e-93 347.8 528 46.6
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 1.8e-93 347.4 527 47.2
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 2.3e-93 347.1 523 44.4
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 6.7e-93 345.5 504 45.2
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 4.8e-91 339.3 491 49.7
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 6.2e-91 339.0 517 44.7
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 6.2e-91 339.0 537 44.9
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 6.2e-91 339.0 490 45.3
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 1.4e-90 337.8 495 47.3
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 7.6e-89 332.0 505 47.7
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 2.9e-88 330.1 542 44.1
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 6.5e-88 328.9 523 44.9
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 8.4e-88 328.6 508 45.7
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 1.1e-87 328.2 526 45.2
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 1.9e-87 327.4 509 46.2
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 1.6e-86 324.3 509 45.0
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.7e-86 323.6 514 42.6
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 1.8e-85 320.9 498 45.2
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 6.7e-85 318.9 509 45.0
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.5e-84 317.8 514 42.0
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 3.3e-84 316.6 495 45.7
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 5.7e-84 315.8 523 42.6
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 7.4e-84 315.5 519 43.2
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 9.7e-84 315.1 509 44.8
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.1e-82 311.6 514 41.6
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.4e-82 311.2 513 43.7
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 4.1e-82 309.7 513 44.1
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 4.5e-81 306.2 509 42.8
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 3.8e-80 303.1 540 40.7
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 2.5e-79 300.4 503 42.7
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 4.2e-79 299.7 507 43.2
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 3.6e-78 296.6 506 42.7
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 7.9e-78 295.4 504 43.5
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 5.1e-77 292.7 451 45.2
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.3e-75 288.1 520 41.3
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 2.2e-75 287.3 502 43.2
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.7e-75 286.6 501 43.3
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 8.2e-75 285.4 520 41.5
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 2.4e-74 283.9 502 42.4
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 3.1e-74 283.5 508 42.1
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 9.1e-74 282.0 424 47.4
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.0e-73 280.8 515 41.0
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 7.7e-73 278.9 507 40.8
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.2e-72 277.3 500 41.2
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 6.5e-72 275.8 512 41.4
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 8.5e-72 275.4 498 42.2
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 1.1e-71 275.0 449 44.5
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 3.2e-71 273.5 510 41.4
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 5.5e-71 272.7 517 40.4
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.2e-70 271.6 433 44.8
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 6.1e-70 269.2 484 41.9
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 1.5e-68 264.6 494 39.5
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 4.4e-68 263.1 517 39.1
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 9.7e-68 261.9 510 40.4
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 1.3e-67 261.5 519 39.7
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 2.8e-67 260.4 395 46.1
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 8.2e-67 258.8 509 40.1
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 7.0e-66 255.8 512 38.9
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 1.0e-64 251.9 496 38.9
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.2e-64 250.8 509 38.9
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.9e-64 250.4 515 39.2
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.9e-64 250.4 502 38.8
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 2.9e-64 250.4 503 39.2
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 5.0e-64 249.6 514 38.3
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 2.3e-61 240.7 499 38.5
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 5.2e-61 239.6 489 35.2
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 8.8e-61 238.8 510 38.4
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 8.8e-61 238.8 501 36.5
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.3e-60 236.9 532 37.6
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 4.4e-60 236.5 495 36.0
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 9.7e-60 235.3 423 43.0
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 1.3e-59 235.0 478 39.7
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 1.4e-58 231.5 497 39.4
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 1.4e-58 231.5 439 41.2
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 9.1e-58 228.8 489 35.4
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.0e-57 227.6 495 36.0
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 2.6e-57 227.3 513 37.8
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 3.5e-57 226.9 503 34.6
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 7.7e-57 225.7 475 39.6
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 2.9e-56 223.8 521 36.3
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 5.0e-56 223.0 469 37.5
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 1.1e-55 221.9 496 36.3
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 4.2e-55 219.9 418 40.2
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 2.1e-54 217.6 514 35.6
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 3.6e-54 216.9 512 35.2
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 1.0e-53 215.3 512 35.4
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 1.0e-53 215.3 516 36.6
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 1.8e-53 214.5 522 35.4
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 8.8e-53 212.2 499 37.5
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 8.8e-53 212.2 456 37.1
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.2e-52 211.8 499 36.5
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 1.3e-51 208.4 404 40.8
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 1.7e-51 208.0 497 34.8
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 4.1e-50 203.4 453 35.5
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.2e-49 201.8 447 38.0
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 4.5e-49 199.9 446 37.4
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 1.9e-47 194.5 409 37.2
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 9.4e-47 192.2 412 36.9
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 3.6e-46 190.3 424 37.0
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 4.7e-46 189.9 478 34.1
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 1.8e-45 188.0 424 35.6
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 1.8e-45 188.0 524 34.0
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.5e-44 184.9 448 34.8
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 1.5e-44 184.9 501 32.3
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 5.7e-44 183.0 418 36.8
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 7.5e-44 182.6 445 35.3
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 3.1e-42 177.2 486 32.1
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 1.2e-41 175.3 430 36.0
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 1.2e-41 175.3 434 35.9
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 3.5e-41 173.7 277 44.4
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 1.3e-40 171.8 437 36.4
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 1.1e-39 168.7 360 40.8
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 1.5e-39 168.3 492 33.7
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 4.2e-39 166.8 434 35.3
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 6.1e-38 162.9 445 33.7
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.0e-36 157.9 427 33.5
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 4.4e-36 156.8 465 32.9
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.1e-34 152.1 175 51.4
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 5.4e-34 149.8 357 35.6
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 7.0e-34 149.4 408 35.0
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 7.0e-34 149.4 450 30.2
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.6e-33 146.7 349 35.8
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 1.7e-32 144.8 422 32.7
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 2.3e-32 144.4 400 33.2
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 2.3e-32 144.4 436 31.4
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 2.3e-32 144.4 422 32.7
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 6.6e-32 142.9 480 30.0
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 1.9e-31 141.4 422 32.5
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 4.3e-31 140.2 276 37.7
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 5.2e-29 133.3 387 31.5
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 2.2e-27 127.9 141 54.6
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 4.9e-27 126.7 214 43.0
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 7.0e-26 122.9 347 32.9
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 7.3e-23 112.8 141 51.8
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 1.6e-22 111.7 475 29.9
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 2.8e-22 110.9 222 40.1
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 6.8e-21 106.3 146 47.3
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 4.9e-19 100.1 436 30.7
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 8.3e-19 99.4 166 40.4
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 1.1e-18 99.0 105 51.4
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.1e-17 94.7 97 48.5
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 3.5e-17 94.0 494 28.5
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 1.1e-15 89.0 524 25.4
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 1.6e-14 85.1 201 34.8
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 1.6e-14 85.1 154 40.3
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 8.1e-14 82.8 297 33.3
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 1.1e-13 82.4 229 28.8
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 5.2e-13 80.1 257 30.7
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 1.3e-11 75.5 224 33.0
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 1.4e-10 72.0 231 33.3
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 1.9e-10 71.6 67 50.7
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 4.1e-10 70.5 213 31.0
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 5.4e-10 70.1 396 27.0
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.7e-09 67.8 368 28.3
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 3.5e-09 67.4 526 25.1
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 6.0e-09 66.6 213 31.0
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 6.0e-09 66.6 246 28.0
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 7.8e-09 66.2 60 56.7
FAN08G1429 Fragaria x ananassa HOM05D003987 ORTHO05D004532 3.9e-08 63.9 85 50.6
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 1.5e-07 62.0 67 46.3
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 2.1e-06 58.2 44 61.4


User provided reference genes

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