Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 0.0e+00 2514.6 1276 100.0
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 0.0e+00 1238.8 1275 54.0
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 0.0e+00 1221.5 1273 55.2
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 0.0e+00 1206.8 1272 53.3
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1171.4 1268 52.3
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 0.0e+00 1168.7 1268 52.3
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1164.1 1276 52.2
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1157.1 1270 52.0
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1152.5 1250 50.9
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 0.0e+00 1149.8 1294 50.0
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1144.0 1271 50.5
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 0.0e+00 1130.9 1319 48.4
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 0.0e+00 1117.1 1345 46.9
QL12p011919 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1110.5 1220 50.5
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1108.2 1319 47.8
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 0.0e+00 1099.7 1259 48.6
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 8.6e-310 1067.4 1264 48.4
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 2.5e-309 1065.8 1285 47.8
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 9.5e-309 1063.9 1315 45.6
Manes.10G091300 Manihot esculenta HOM05D005395 ORTHO05D006352 1.4e-307 1060.1 1255 48.2
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 5.2e-307 1058.1 1252 48.1
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 9.9e-306 1053.9 1265 47.9
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 9.9e-306 1053.9 1271 47.5
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 2.3e-302 1042.7 1320 46.0
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 3.3e-301 1038.9 1279 46.9
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 5.2e-299 1031.6 1274 45.8
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 5.2e-299 1031.6 1266 46.8
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 7.8e-295 1017.7 1259 46.6
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 1.1e-293 1013.8 1266 47.2
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 1.1e-293 1013.8 1263 47.6
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 1.3e-292 1010.4 1285 45.8
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 4.2e-280 968.8 1298 44.4
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 7.6e-274 948.0 1298 44.1
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 2.9e-273 946.0 1268 44.2
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 6.3e-268 928.3 1060 49.9
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 1.7e-265 920.2 1283 44.2
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 2.9e-265 919.5 1281 43.8
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 5.0e-265 918.7 1284 43.1
Thecc.10G136000 Theobroma cacao HOM05D005395 ORTHO05D006352 2.1e-263 913.3 1101 46.1
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 1.0e-262 911.0 1270 43.8
Gorai.012G022200 Gossypium raimondii HOM05D005395 ORTHO05D006352 1.8e-262 910.2 1269 42.1
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 4.3e-261 905.6 1019 49.4
Gohir.D04G018600 Gossypium hirsutum HOM05D005395 ORTHO05D006352 4.3e-261 905.6 1276 42.2
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 3.1e-259 899.4 1289 42.3
Gohir.A05G396700 Gossypium hirsutum HOM05D005395 ORTHO05D006352 3.4e-258 896.0 1270 42.1
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 3.0e-254 882.9 1318 40.4
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 5.0e-249 865.5 1286 40.9
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 4.2e-248 862.4 1444 39.1
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 4.4e-245 852.4 1292 40.3
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 2.2e-244 850.1 1280 41.3
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 4.5e-242 842.4 1289 41.2
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 1.6e-239 833.9 1246 41.4
EL10Ac1g02254 Beta vulgaris HOM05D005395 ORTHO05D006352 2.2e-236 823.5 1316 39.4
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 1.8e-235 820.5 1318 38.7
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 2.0e-229 800.4 1001 45.8
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 1.8e-227 793.9 827 51.1
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 8.5e-225 785.0 1305 39.1
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 5.9e-218 762.3 850 48.4
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 7.7e-218 761.9 1251 38.5
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 1.7e-212 744.2 841 49.3
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 1.6e-210 737.6 1250 38.6
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 1.0e-209 734.9 1251 38.3
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 1.0e-209 734.9 1251 38.4
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 3.3e-208 729.9 1251 38.2
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 1.6e-207 727.6 1268 38.6
Migut.B01303 Erythranthe guttata HOM05D005395 ORTHO05D006352 1.4e-206 724.5 1180 39.9
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 4.0e-206 723.0 1254 37.9
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 2.9e-204 716.8 1249 36.8
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 4.1e-203 713.0 1251 37.3
Atru.chr11.730 Acer truncatum HOM05D005395 ORTHO05D006352 5.0e-201 706.1 871 46.8
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 2.8e-199 700.3 1254 37.0
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 8.6e-193 678.7 1286 35.5
Migut.B01025 Erythranthe guttata HOM05D005395 ORTHO05D006352 1.4e-187 661.4 874 44.1
Sc04g0005700 Simmondsia chinensis HOM05D005395 ORTHO05D006352 3.3e-184 650.2 878 42.7
CsaV3_3G032200 Cucumis sativus L. HOM05D005395 ORTHO05D006352 2.4e-182 644.0 932 42.8
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 1.2e-178 631.7 1115 38.0
AUR62014136 Chenopodium quinoa HOM05D005395 ORTHO05D006352 2.1e-170 604.4 1484 31.6
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 2.9e-164 583.9 1258 34.3
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 1.0e-153 548.9 1096 36.1
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 9.1e-142 509.2 615 45.7
Pp3c1_42700 Physcomitrium patens HOM05D005395 ORTHO05D006352 1.4e-131 475.3 1352 28.4
SHI19147 Sapria himalayana HOM05D005395 ORTHO05D006352 2.1e-130 471.5 873 36.3
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 5.0e-124 450.3 833 34.8
AagrBONN_evm.TU.Sc2ySwM_344.2351 Anthoceros agrestis HOM05D005395 ORTHO05D006352 8.0e-122 443.0 776 35.1
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 2.0e-120 438.3 367 59.9
Mapoly0009s0015 Marchantia polymorpha HOM05D005395 ORTHO05D006352 8.2e-119 433.0 1146 29.1
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 1.0e-116 426.0 371 58.2
vmacro19894 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 1.9e-115 421.8 487 47.0
Hma1.2p1_0293F.1_g116170 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 6.8e-113 413.3 378 54.8
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 4.8e-111 407.1 374 55.6
ATR0681G222 Amborella trichopoda HOM05D005395 ORTHO05D006352 1.3e-108 399.1 843 33.8
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 5.0e-108 397.1 384 52.3
Lalb_Chr13g0291141 Lupinus albus HOM05D005395 ORTHO05D006352 5.0e-100 370.5 401 47.9
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 9.5e-99 366.3 318 58.8
QL05p050737 Quercus lobata HOM05D005395 ORTHO05D006352 5.4e-86 323.9 469 42.6
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 1.5e-75 289.3 273 55.7
Lalb_Chr13g0291131 Lupinus albus HOM05D005395 ORTHO05D006352 2.8e-66 258.5 451 38.8
Cpa.g.sc245.15 Carica papaya HOM05D005395 ORTHO05D006352 3.2e-62 245.0 257 51.4
SEGI_03843 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 9.3e-62 243.4 457 33.5
SEGI_22370 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 3.3e-59 235.0 343 40.5
SEGI_30633 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 3.3e-59 235.0 343 40.5
MCO03G604 Micromonas commoda HOM05D005395 ORTHO05D006352 2.1e-58 232.3 1012 24.1
Nitab4.5_0002179g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 4.8e-58 231.1 195 61.0
Hma1.2p1_0293F.1_g116180 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 3.7e-50 204.9 323 44.0
PSO384G3069 Papaver somniferum HOM05D005395 ORTHO05D006352 4.0e-49 201.4 249 42.2
Dinv12038 Davidia involucrata HOM05D005395 ORTHO05D006352 2.9e-47 195.3 200 53.0
SEGI_09183 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 3.3e-43 181.8 703 24.9
Cfa026815 Carpinus fangiana HOM05D005395 ORTHO05D006352 2.8e-42 178.7 572 24.5
CAN.G1820.3 Capsicum annuum HOM05D005395 ORTHO05D006352 2.5e-38 165.6 181 50.3
Lj7P570T32 Lonicera japonica HOM05D005395 ORTHO05D006352 2.5e-38 165.6 193 48.7
BcaC04g18840 Brassica carinata HOM05D005395 ORTHO05D006352 3.4e-32 145.2 205 42.4
CDE07G0235 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 1.2e-29 136.7 179 43.0
CBR_g45714 Chara braunii HOM05D005395 ORTHO05D006352 6.1e-29 134.4 354 26.6
Ca_14375_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 3.7e-26 125.2 302 33.8
Cre04.g213652 Chlamydomonas reinhardtii HOM05D005395 ORTHO05D006352 6.9e-25 120.9 173 42.2
CDE07G1503 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 1.2e-24 120.2 144 45.1
ATR0829G203 Amborella trichopoda HOM05D005395 ORTHO05D006352 2.6e-24 119.0 188 38.3
Cpa.g.sc245.13 Carica papaya HOM05D005395 ORTHO05D006352 1.9e-22 112.8 149 43.0
CBR_g45710 Chara braunii HOM05D005395 ORTHO05D006352 2.1e-21 109.4 150 42.0
PSO384G2197 Papaver somniferum HOM05D005395 ORTHO05D006352 1.0e-15 90.5 96 42.7
Lsat_1_v5_gn_3_2761 Lactuca sativa HOM05D005395 ORTHO05D006352 1.7e-15 89.7 148 40.5
SEGI_37340 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.2e-13 83.6 154 34.4
BcaC06g35111 Brassica carinata HOM05D020491 ORTHO05D006352 2.1e-13 82.8 140 37.1
Os12g0293100 Oryza sativa ssp. japonica HOM05D005395 ORTHO05D006352 1.5e-11 76.6 312 27.6
SHI19146 Sapria himalayana HOM05D005395 ORTHO05D002065 2.0e-11 76.3 95 46.3
QL02p026296 Quercus lobata HOM05D005395 ORTHO05D006352 4.4e-11 75.1 96 41.7
CSS0040942 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 1.7e-10 73.2 84 48.8
Aa31sc690G30 Aethionema arabicum HOM05D005395 ORTHO05D006352 2.4e-09 69.3 94 37.2
BcaB02g11432 Brassica carinata HOM05D020491 ORTHO05D006352 3.1e-09 68.9 103 40.8
CSS0036458 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 3.1e-09 68.9 84 48.8
CSS0041236 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 1.2e-08 67.0 84 47.6
Nitab4.5_0002179g0020 Nicotiana tabacum HOM05D005395 ORTHO05D006352 3.5e-08 65.5 116 33.6
CSS0042886 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 1.0e-07 63.9 84 45.2
CDE07G0311 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 5.0e-07 61.6 69 46.4
DCAR_024213 Daucus carota HOM05D005395 ORTHO05D006352 8.5e-07 60.8 84 42.9
BcaC01g02118 Brassica carinata HOM05D014762 ORTHO05D023916 1.9e-06 59.7 78 41.0
DCAR_005448 Daucus carota HOM05D005395 ORTHO05D006352 4.2e-06 58.5 84 41.7


User provided reference genes

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