Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 0.0e+00 1757.7 928 100.0
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 2.8e-116 424.1 1067 37.7
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 3.6e-108 397.1 1072 35.4
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 4.2e-96 357.1 1050 33.0
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 3.5e-95 354.0 1143 32.9
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.3e-89 335.5 1213 31.9
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 1.9e-88 331.6 1213 31.8
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 9.3e-88 329.3 1324 30.4
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 1.1e-85 322.4 1190 32.8
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 3.7e-84 317.4 1207 31.3
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 8.5e-81 306.2 1265 30.2
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 1.9e-80 305.1 1129 31.0
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 2.7e-79 301.2 1069 31.4
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 8.8e-78 296.2 1012 31.6
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 4.3e-77 293.9 1205 30.3
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 9.1e-75 286.2 1043 31.3
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 2.0e-74 285.0 1069 29.3
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 7.9e-71 273.1 1119 30.7
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 7.9e-71 273.1 1040 32.4
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 1.4e-70 272.3 1135 29.9
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 1.8e-70 271.9 1071 31.5
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 1.8e-70 271.9 1205 30.0
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 3.0e-70 271.2 1055 31.0
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 8.2e-68 263.1 1140 29.0
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 4.5e-66 257.3 1090 29.4
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 4.5e-66 257.3 1049 30.1
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 1.3e-65 255.8 984 30.1
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 1.3e-65 255.8 1025 29.5
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 5.0e-65 253.8 1027 30.1
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 1.1e-64 252.7 1126 29.1
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 5.5e-64 250.4 1002 29.9
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 9.4e-64 249.6 1017 30.5
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 2.1e-63 248.4 506 39.7
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 6.1e-63 246.9 1119 27.2
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 1.4e-62 245.7 1021 30.1
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 4.0e-62 244.2 1127 30.3
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 2.0e-61 241.9 1093 29.6
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 2.6e-61 241.5 997 29.7
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 7.4e-61 240.0 996 30.4
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 7.4e-61 240.0 1117 27.6
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 4.8e-60 237.3 1108 29.5
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 7.0e-59 233.4 957 29.9
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 1.6e-58 232.3 1135 29.3
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.0e-58 231.9 957 30.2
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 4.5e-58 230.7 1131 29.9
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 2.2e-57 228.4 977 28.4
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 2.2e-57 228.4 992 28.8
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 2.9e-57 228.0 265 53.2
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 5.5e-56 223.8 1117 28.5
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 9.4e-56 223.0 925 30.8
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 4.7e-55 220.7 1139 27.8
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 8.0e-55 219.9 1094 29.6
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 1.4e-54 219.2 1152 28.4
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 4.0e-54 217.6 487 39.2
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 2.6e-53 214.9 1092 26.1
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 9.8e-53 213.0 996 28.7
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.8e-52 211.5 1012 28.9
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.1e-51 207.6 947 28.7
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 7.0e-51 206.8 412 43.4
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 9.1e-51 206.5 753 34.3
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 9.1e-51 206.5 927 28.6
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 3.5e-50 204.5 911 29.4
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 5.9e-50 203.8 988 29.1
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.5e-48 199.1 900 29.2
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 7.2e-48 196.8 970 27.8
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 9.4e-48 196.4 966 28.6
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 1.6e-47 195.7 231 54.1
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.6e-47 195.7 326 44.5
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 1.4e-46 192.6 238 50.0
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.5e-45 189.1 499 36.3
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 3.7e-44 184.5 1055 26.2
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 6.3e-44 183.7 1072 25.9
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 1.1e-43 183.0 1072 25.9
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 4.5e-42 177.6 1128 26.7
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.5e-40 172.6 893 28.0
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 7.2e-40 170.2 636 32.2
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 5.2e-38 164.1 982 27.8
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 2.6e-37 161.8 173 58.4
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 9.8e-37 159.8 934 25.3
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 1.3e-36 159.5 331 37.5
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 6.4e-36 157.1 989 26.9
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 8.3e-36 156.8 1036 25.1
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 1.8e-35 155.6 235 46.4
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 7.0e-35 153.7 973 25.1
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 9.2e-35 153.3 1060 25.1
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 2.0e-34 152.1 1083 26.8
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 2.1e-31 142.1 950 25.8
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 4.7e-31 141.0 241 41.9
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 1.0e-30 139.8 225 46.2
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 7.5e-29 133.7 865 25.1
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 7.5e-29 133.7 312 39.1
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 1.1e-27 129.8 998 25.9
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 7.0e-27 127.1 882 26.6
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 2.3e-25 122.1 143 52.4
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 1.1e-24 119.8 233 41.2
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 3.1e-22 111.7 236 35.6
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 2.0e-21 109.0 570 28.9
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 2.2e-20 105.5 345 29.3
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 1.9e-19 102.4 1030 24.0
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 2.4e-19 102.1 161 42.2
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.6e-18 99.4 938 23.7
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 3.5e-18 98.2 931 23.7
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 3.0e-17 95.1 992 24.3
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-16 92.8 925 23.1
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 6.8e-14 84.0 941 23.0
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 1.2e-13 83.2 934 23.3
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 1.2e-13 83.2 963 23.3
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 1.2e-13 83.2 983 23.2
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 1.5e-13 82.8 72 50.0
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 2.0e-13 82.4 935 22.8
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 3.4e-13 81.6 386 23.8
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 5.8e-13 80.9 99 43.4
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 1.7e-12 79.3 936 22.2
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 1.9e-11 75.9 53 56.6
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 4.1e-11 74.7 124 37.1
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 2.1e-10 72.4 59 62.7
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 2.7e-10 72.0 38 71.1
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 4.6e-10 71.2 942 23.6
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 1.3e-09 69.7 933 22.6
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 2.3e-09 68.9 65 50.8
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 2.3e-09 68.9 776 22.2
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 3.0e-09 68.6 469 26.2
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 3.3e-08 65.1 412 26.2
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 5.6e-08 64.3 41 61.0
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 5.6e-08 64.3 41 61.0
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 1.2e-07 63.2 61 44.3
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 1.2e-07 63.2 61 44.3
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 1.6e-07 62.8 34 67.6
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 2.8e-07 62.0 67 44.8
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 4.7e-07 61.2 35 65.7
Zm00001eb317490 Zea mays HOM05D020277 ORTHO05D023046 1.1e-06 60.1 141 29.8
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 1.8e-06 59.3 206 27.2
CDE05G0606 Ceratophyllum demersum HOM05D062397 ORTHO05D043856 1.8e-06 59.3 176 29.0
Mapoly0034s0131 Marchantia polymorpha HOM05D005839 ORTHO05D005686 2.4e-06 58.9 56 48.2
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 3.1e-06 58.5 73 37.0
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 6.8e-06 57.4 942 21.5
Actinidia04544 Actinidia chinensis HOM05D005839 ORTHO05D005686 8.9e-06 57.0 66 53.0
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 8.9e-06 57.0 204 26.0
Mapoly0059s0004 Marchantia polymorpha HOM05D005839 ORTHO05D005686 8.9e-06 57.0 82 37.8


User provided reference genes

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