Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1588 Cannabis sativa HOM05D006603 ORTHO05D007786 6.2e-74 280.8 150 100.0
MD16G1228700 Malus domestica HOM05D006603 ORTHO05D007786 6.9e-49 197.6 149 69.8
Manes.03G157300 Manihot esculenta HOM05D006603 ORTHO05D007786 9.0e-49 197.2 149 73.2
MD13G1223900 Malus domestica HOM05D006603 ORTHO05D007786 5.8e-48 194.5 149 69.1
FAN12G4195 Fragaria x ananassa HOM05D006603 ORTHO05D007786 1.7e-47 193.0 149 70.5
Lj6g0018890 Lotus japonicus HOM05D006603 ORTHO05D007786 2.9e-47 192.2 149 70.5
Ciclev10006126m.g Citrus clementina HOM05D006603 ORTHO05D007786 4.9e-47 191.4 150 70.0
FvH4_4g05040 Fragaria vesca HOM05D006603 ORTHO05D007786 1.1e-46 190.3 149 69.8
Medtr1g045660 Medicago truncatula HOM05D006603 ORTHO05D007786 1.1e-46 190.3 149 69.1
RcHm_v2.0_Chr4g0395941 Rosa chinensis HOM05D006603 ORTHO05D007786 1.1e-46 190.3 149 69.1
CiPaw.01G176600 Carya illinoinensis HOM05D006603 ORTHO05D007786 3.2e-46 188.7 149 69.8
FAN22G1779 Fragaria x ananassa HOM05D006603 ORTHO05D007786 7.1e-46 187.6 149 69.1
Ca_25848_v3 Cicer arietinum L. HOM05D006603 ORTHO05D007786 1.6e-45 186.4 150 68.7
TPR.G23967 Trifolium pratense HOM05D006603 ORTHO05D007786 2.7e-45 185.7 150 68.0
Lalb_Chr03g0036931 Lupinus albus HOM05D006603 ORTHO05D007786 4.6e-45 184.9 149 67.1
Psat6g018400 Pisum sativum HOM05D006603 ORTHO05D007786 6.0e-45 184.5 149 67.1
Thecc.04G267600 Theobroma cacao HOM05D006603 ORTHO05D007786 1.7e-44 183.0 149 69.1
Glyma.20G082000 Glycine max HOM05D006603 ORTHO05D007786 2.3e-44 182.6 149 67.1
MELO3C023048.2 Cucumis melo HOM05D006603 ORTHO05D007786 6.6e-44 181.0 149 65.8
Gohir.D09G231900 Gossypium hirsutum HOM05D006603 ORTHO05D007786 2.5e-43 179.1 147 67.3
CsaV3_2G012360 Cucumis sativus L. HOM05D006603 ORTHO05D007786 9.6e-43 177.2 149 65.1
Gohir.A09G230800 Gossypium hirsutum HOM05D006603 ORTHO05D007786 1.3e-42 176.8 143 67.8
THA.LOC104816009 Tarenaya hassleriana HOM05D006603 ORTHO05D007786 1.6e-42 176.4 144 70.8
arahy.Tifrunner.gnm1.ann1.T2GGRX Arachis hypogaea HOM05D006603 ORTHO05D007786 2.8e-42 175.6 173 59.5
Manes.15G046500 Manihot esculenta HOM05D006603 ORTHO05D007786 2.8e-42 175.6 141 68.8
arahy.Tifrunner.gnm1.ann1.GIKJ41 Arachis hypogaea HOM05D006603 ORTHO05D007786 3.6e-42 175.3 173 60.1
Duzib151G0118 Durio zibethinus HOM05D006603 ORTHO05D007786 3.6e-42 175.3 139 71.9
Potri.010G064500 Populus trichocarpa HOM05D006603 ORTHO05D007786 1.1e-41 173.7 149 65.1
MBI10_g39247_MAGBIO Magnolia biondii HOM05D006603 ORTHO05D007786 1.4e-41 173.3 150 64.0
TWI73G0993 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 3.1e-41 172.2 149 63.8
TAR633G2131 Trochodendron aralioides HOM05D006603 ORTHO05D007786 4.0e-41 171.8 146 64.4
Phvul.007G231900 Phaseolus vulgaris HOM05D006603 ORTHO05D007786 5.3e-41 171.4 148 64.9
Eucgr.H02902 Eucalyptus grandis HOM05D006603 ORTHO05D007786 6.9e-41 171.0 147 67.3
EL10Ac3g06681 Beta vulgaris HOM05D006603 ORTHO05D007786 9.0e-41 170.6 150 62.0
Potri.008G173000 Populus trichocarpa HOM05D006603 ORTHO05D007786 1.5e-40 169.9 145 62.1
Duzib212G0187 Durio zibethinus HOM05D006603 ORTHO05D007786 2.6e-40 169.1 149 63.8
Dinv29792 Davidia involucrata HOM05D006603 ORTHO05D007786 7.6e-40 167.5 150 63.3
Aqoxy2G03755 Aquilegia oxysepala HOM05D006603 ORTHO05D007786 2.2e-39 166.0 149 61.1
Actinidia11378 Actinidia chinensis HOM05D006603 ORTHO05D007786 3.8e-39 165.2 150 62.0
TWI09G1292 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 4.9e-39 164.9 149 63.8
GSVIVG01027941001 Vitis vinifera HOM05D006603 ORTHO05D007786 8.4e-39 164.1 145 64.8
CSS0001604 Camellia sinensis var. sinensis HOM05D006603 ORTHO05D007786 3.2e-38 162.2 146 61.6
Carub.0001s0377 Capsella rubella HOM05D006603 ORTHO05D007786 5.4e-38 161.4 143 64.3
PGR004G2303 Punica granatum HOM05D006603 ORTHO05D007786 5.4e-38 161.4 148 64.2
BolC5t29054H Brassica oleracea HOM05D006603 ORTHO05D007786 2.1e-37 159.5 143 64.3
Thhalv10009014m.g Eutrema salsugineum HOM05D006603 ORTHO05D007786 3.5e-37 158.7 149 61.7
Actinidia39936 Actinidia chinensis HOM05D006603 ORTHO05D007786 7.9e-37 157.5 150 58.7
Sp1g03390 Schrenkiella parvula HOM05D006603 ORTHO05D007786 1.0e-36 157.1 153 59.5
Sc25g0004840 Simmondsia chinensis HOM05D006603 ORTHO05D007786 1.3e-36 156.8 150 58.0
AT1G04555 Arabidopsis thaliana HOM05D006603 ORTHO05D007786 1.8e-36 156.4 143 62.9
AL1G14230 Arabidopsis lyrata HOM05D006603 ORTHO05D007786 2.3e-36 156.0 143 62.9
BraA10t42567Z Brassica rapa HOM05D006603 ORTHO05D007786 5.1e-36 154.8 144 63.9
Hma1.2p1_0112F.1_g054890 Hydrangea macrophylla HOM05D006603 ORTHO05D007786 1.9e-35 152.9 145 57.9
ATR0787G168 Amborella trichopoda HOM05D006603 ORTHO05D007786 7.4e-35 151.0 151 58.3
Cc03_g06500 Coffea canephora HOM05D006603 ORTHO05D007786 7.4e-35 151.0 145 62.8
Nitab4.5_0005154g0030 Nicotiana tabacum HOM05D006603 ORTHO05D007786 1.3e-34 150.2 140 60.0
Haze_11482 Corylus avellana HOM05D006603 ORTHO05D007786 6.2e-34 147.9 139 63.3
PSO210G0805 Papaver somniferum HOM05D006603 ORTHO05D007786 6.2e-34 147.9 146 58.9
CAN.G812.23 Capsicum annuum HOM05D006603 ORTHO05D007786 8.1e-34 147.5 143 58.7
Hund22279 Selenicereus undatus HOM05D006603 ORTHO05D007786 1.1e-33 147.1 150 57.3
BcaNung06560 Brassica carinata HOM05D006603 ORTHO05D007786 1.4e-33 146.7 145 60.0
Peaxi162Scf00531g00210 Petunia axillaris HOM05D006603 ORTHO05D007786 2.4e-33 146.0 149 59.1
CARHR003900 Cardamine hirsuta HOM05D006603 ORTHO05D007786 4.0e-33 145.2 134 62.7
Prupe.1G050700 Prunus persica HOM05D006603 ORTHO05D007786 4.0e-33 145.2 96 79.2
PSO210G7184 Papaver somniferum HOM05D006603 ORTHO05D007786 2.0e-32 142.9 148 58.1
QL06p021600 Quercus lobata HOM05D006603 ORTHO05D007786 3.4e-32 142.1 96 78.1
Cfa014798 Carpinus fangiana HOM05D006603 ORTHO05D007786 7.6e-32 141.0 93 80.6
FAN17G1046 Fragaria x ananassa HOM05D006603 ORTHO05D007786 7.6e-32 141.0 103 75.7
VMungo0720G0308 Vigna mungo HOM05D006603 ORTHO05D007786 9.9e-32 140.6 125 62.4
Lsat_1_v5_gn_1_75441 Lactuca sativa HOM05D006603 ORTHO05D007786 1.7e-31 139.8 140 57.1
Sabra08G0132100 Salix brachista HOM05D006603 ORTHO05D007786 8.4e-31 137.5 93 78.5
Os02g0816700 Oryza sativa ssp. japonica HOM05D006603 ORTHO05D007786 1.1e-30 137.1 155 52.3
Gorai.006G254700 Gossypium raimondii HOM05D006603 ORTHO05D007786 1.9e-30 136.3 123 62.6
Sopen09g033770 Solanum pennellii HOM05D006603 ORTHO05D007786 3.2e-30 135.6 141 54.6
vmacro15486 Vaccinium macrocarpon HOM05D006603 ORTHO05D007786 3.2e-30 135.6 170 50.0
Aa31LG1G20320 Aethionema arabicum HOM05D006603 ORTHO05D007786 5.5e-30 134.8 140 59.3
COL.COLO4_15990 Corchorus olitorius HOM05D006603 ORTHO05D007786 9.3e-30 134.0 123 61.8
CDE04G0122 Ceratophyllum demersum HOM05D006603 ORTHO05D007786 1.6e-29 133.3 146 55.5
ECA248G1661 Erigeron canadensis HOM05D006603 ORTHO05D007786 1.6e-29 133.3 138 55.8
Sed0025873 Sechium edule HOM05D006603 ORTHO05D007786 2.1e-29 132.9 125 59.2
ClCG06G007300 Citrullus lanatus HOM05D006603 ORTHO05D007786 2.7e-29 132.5 149 53.7
BolC8t46928H Brassica oleracea HOM05D006603 ORTHO05D007786 3.5e-29 132.1 144 59.0
HanXRQChr01g0023081 Helianthus annuus HOM05D006603 ORTHO05D007786 4.6e-29 131.7 140 52.9
PGSC0003DMG400001502 Solanum tuberosum HOM05D006603 ORTHO05D007786 7.9e-29 131.0 141 53.9
BolC8t46922H Brassica oleracea HOM05D006603 ORTHO05D007786 1.0e-28 130.6 144 58.3
BolC8t46924H Brassica oleracea HOM05D006603 ORTHO05D007786 1.3e-28 130.2 144 58.3
BolC8t46925H Brassica oleracea HOM05D006603 ORTHO05D007786 1.3e-28 130.2 144 58.3
Oeu059390.1 Olea europaea HOM05D006603 ORTHO05D007786 1.8e-28 129.8 150 53.3
BcaC07g36903 Brassica carinata HOM05D006603 ORTHO05D007786 3.9e-28 128.6 141 59.6
SGA_v2.0_scaffold147G36268 Striga asiatica HOM05D006603 ORTHO05D007786 6.7e-28 127.9 143 58.0
A08p36880 Brassica napus HOM05D006603 ORTHO05D007786 3.3e-27 125.6 144 56.9
MSTRG.9849 Avicennia marina HOM05D006603 ORTHO05D007786 5.6e-27 124.8 150 51.3
Cfa014800 Carpinus fangiana HOM05D006603 ORTHO05D007786 7.4e-27 124.4 81 81.5
C05p02730 Brassica napus HOM05D001210 ORTHO05D001036 6.2e-26 121.3 117 59.8
AUR62018035 Chenopodium quinoa HOM05D006603 ORTHO05D007786 6.2e-26 121.3 121 56.2
Ah.04g153810 Amaranthus hybridus HOM05D006603 ORTHO05D007786 1.4e-25 120.2 123 58.5
Rhsim02G0047700 Rhododendron simsii HOM05D006603 ORTHO05D007786 1.4e-25 120.2 124 53.2
AUR62015239 Chenopodium quinoa HOM05D006603 ORTHO05D007786 1.8e-25 119.8 120 55.8
Zm00001eb191430 Zea mays HOM05D006603 ORTHO05D007786 3.1e-25 119.0 102 67.6
BcaB03g13488 Brassica carinata HOM05D006603 ORTHO05D007786 6.9e-25 117.9 127 57.5
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 6.9e-25 117.9 138 54.3
Migut.G00559 Erythranthe guttata HOM05D006603 ORTHO05D007786 1.3e-23 113.6 152 46.1
Solyc09g090820.4 Solanum lycopersicum HOM05D006603 ORTHO05D007786 3.8e-23 112.1 89 68.5
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 2.5e-22 109.4 96 71.9
BraA08t35589Z Brassica rapa HOM05D003335 ORTHO05D003853 3.5e-21 105.5 96 69.8
HPP92_020757 Vanilla planifolia HOM05D006603 ORTHO05D007786 4.6e-21 105.1 150 44.7
Nitab4.5_0001041g0010 Nicotiana tabacum HOM05D006603 ORTHO05D007786 1.0e-20 104.0 120 52.5
BraA09t42112Z Brassica rapa HOM05D000117 ORTHO05D007786 1.3e-20 103.6 94 69.1
arahy.Tifrunner.gnm1.ann1.QP5CHE Arachis hypogaea HOM05D006603 ORTHO05D007786 2.3e-20 102.8 125 54.4
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 3.0e-20 102.4 93 60.2
arahy.Tifrunner.gnm1.ann1.YUK4FD Arachis hypogaea HOM05D006603 ORTHO05D007786 3.9e-20 102.1 139 48.2
Dinv27124 Davidia involucrata HOM05D006603 ORTHO05D007786 5.1e-20 101.7 80 68.8
Cpa.g.sc59.20 Carica papaya HOM05D006603 ORTHO05D007786 4.3e-19 98.6 72 73.6
arahy.Tifrunner.gnm1.ann1.M12JR8 Arachis hypogaea HOM05D006603 ORTHO05D007786 2.2e-18 96.3 141 48.2
unitig_32.g11693 Utricularia gibba HOM05D006603 ORTHO05D007786 4.1e-17 92.0 160 40.6
Sabra10G0042500 Salix brachista HOM05D006603 ORTHO05D007786 9.0e-17 90.9 88 59.1
SalBow2G0496 Salvia bowleyana HOM05D006603 ORTHO05D007786 3.4e-16 89.0 121 47.9
arahy.Tifrunner.gnm1.ann1.N50CGY Arachis hypogaea HOM05D006603 ORTHO05D007786 1.4e-14 83.6 89 58.4
arahy.Tifrunner.gnm1.ann1.49WF5R Arachis hypogaea HOM05D006603 ORTHO05D007786 7.2e-14 81.3 86 58.1
Mapoly0020s0146 Marchantia polymorpha HOM05D002103 ORTHO05D007786 9.3e-14 80.9 146 36.3
GSVIVG01027940001 Vitis vinifera HOM05D006603 ORTHO05D015671 7.9e-13 77.8 98 53.1
SMO144G0051 Selaginella moellendorffii HOM05D002103 ORTHO05D007786 6.7e-12 74.7 137 35.0
SMO271G0137 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 3.3e-11 72.4 138 37.7
C08p52130 Brassica napus HOM05D000117 ORTHO05D001036 9.7e-11 70.9 62 62.9
SMO308G0045 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 1.7e-10 70.1 131 38.9
A09p67800 Brassica napus HOM05D000117 ORTHO05D001036 2.8e-10 69.3 61 68.9
Nn1g02998 Nelumbo nucifera HOM05D006603 ORTHO05D007786 3.7e-10 68.9 81 46.9
AagrBONN_evm.TU.Sc2ySwM_228.3673 Anthoceros agrestis HOM05D002103 ORTHO05D004020 1.1e-09 67.4 137 37.2
Hma1.2p1_0982F.1_g243900 Hydrangea macrophylla HOM05D002103 ORTHO05D004020 1.1e-09 67.4 150 36.0
CiPaw.16G045800 Carya illinoinensis HOM05D002103 ORTHO05D004020 2.0e-08 63.2 152 35.5
CsaV3_2G028030 Cucumis sativus L. HOM05D002103 ORTHO05D004020 1.0e-07 60.8 157 32.5
BolC8t46926H Brassica oleracea HOM05D006603 ORTHO05D007786 1.7e-07 60.1 106 45.3
Cfa018527 Carpinus fangiana HOM05D002103 ORTHO05D004020 2.2e-07 59.7 152 32.2
CANSAT01G2416 Cannabis sativa HOM05D002103 ORTHO05D004020 2.9e-07 59.3 151 31.1
MELO3C010883.2 Cucumis melo HOM05D002103 ORTHO05D004020 2.9e-07 59.3 157 31.8
Thhalv10025691m.g Eutrema salsugineum HOM05D002103 ORTHO05D004020 3.8e-07 58.9 141 30.5
Actinidia23265 Actinidia chinensis HOM05D002103 ORTHO05D004020 5.0e-07 58.5 141 33.3
CARHR241420 Cardamine hirsuta HOM05D002103 ORTHO05D004020 5.0e-07 58.5 140 30.0
Pp3c12_23290 Physcomitrium patens HOM05D002103 ORTHO05D004020 5.0e-07 58.5 154 31.8
Sp7g31080 Schrenkiella parvula HOM05D002103 ORTHO05D004020 5.0e-07 58.5 141 29.8
CSS0022390 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 8.5e-07 57.8 153 34.0
MD08G1103400 Malus domestica HOM05D002103 ORTHO05D004020 8.5e-07 57.8 151 29.8
AagrBONN_evm.TU.Sc2ySwM_362.2116 Anthoceros agrestis HOM05D006603 ORTHO05D007786 1.1e-06 57.4 137 36.5
GSVIVG01009523001 Vitis vinifera HOM05D002103 ORTHO05D004020 1.1e-06 57.4 142 32.4
MD15G1084700 Malus domestica HOM05D002103 ORTHO05D004020 1.4e-06 57.0 150 30.7
Gohir.D06G015300 Gossypium hirsutum HOM05D002103 ORTHO05D004020 1.9e-06 56.6 142 32.4
Prupe.1G438400 Prunus persica HOM05D002103 ORTHO05D004020 1.9e-06 56.6 150 31.3
Thecc.08G010900 Theobroma cacao HOM05D002103 ORTHO05D004020 1.9e-06 56.6 158 29.1
Dinv39328 Davidia involucrata HOM05D002103 ORTHO05D004020 2.5e-06 56.2 151 31.8
Duzib093G0320 Durio zibethinus HOM05D002103 ORTHO05D004020 2.5e-06 56.2 140 32.1
SEGI_34793 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 2.5e-06 56.2 67 49.3
TAR381G0883 Trochodendron aralioides HOM05D002103 ORTHO05D004020 2.5e-06 56.2 153 31.4
Atru.chr13.650 Acer truncatum HOM05D002103 ORTHO05D004020 3.2e-06 55.8 151 29.8
A10p02970 Brassica napus HOM05D000117 ORTHO05D001036 3.2e-06 55.8 46 65.2
Gohir.A06G017200 Gossypium hirsutum HOM05D002103 ORTHO05D004020 3.2e-06 55.8 142 31.7
Pp3c19_17840 Physcomitrium patens HOM05D002103 ORTHO05D004020 3.2e-06 55.8 146 29.5
Phvul.009G063800 Phaseolus vulgaris HOM05D002103 ORTHO05D004020 4.2e-06 55.5 140 32.1
Nn5g30229 Nelumbo nucifera HOM05D002103 ORTHO05D004020 5.5e-06 55.1 131 33.6
QL06p021608 Quercus lobata HOM05D006603 ORTHO05D007786 5.5e-06 55.1 54 57.4
Glyma.17G243300 Glycine max HOM05D002103 ORTHO05D004020 9.4e-06 54.3 153 31.4
TPR.G35873 Trifolium pratense HOM05D002103 ORTHO05D004020 9.4e-06 54.3 136 31.6
TAR625G1123 Trochodendron aralioides HOM05D002103 ORTHO05D004020 9.4e-06 54.3 155 30.3


User provided reference genes

Program Settings