Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1456 Cannabis sativa HOM05D007595 ORTHO05D009570 5.5e-234 814.3 538 100.0
CANSAT25G1659 Cannabis sativa HOM05D007595 ORTHO05D009570 8.8e-139 498.0 277 88.4
Hund27417 Selenicereus undatus HOM05D007595 ORTHO05D009570 4.6e-87 326.2 501 62.3
Cfa011030 Carpinus fangiana HOM05D007595 ORTHO05D009570 7.8e-79 298.9 249 62.2
QL04p026468 Quercus lobata HOM05D007595 ORTHO05D009570 1.5e-77 294.7 306 52.6
Prupe.1G180300 Prunus persica HOM05D007595 ORTHO05D009570 3.3e-77 293.5 279 54.1
CANSAT54G2206 Cannabis sativa HOM05D007595 ORTHO05D009570 6.2e-76 289.3 273 56.0
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 1.8e-75 287.7 256 59.0
CiPaw.13G022600 Carya illinoinensis HOM05D007595 ORTHO05D009570 5.3e-75 286.2 244 60.2
TWI59G0156 Tripterygium wilfordii HOM05D007595 ORTHO05D009570 1.2e-74 285.0 249 60.2
FvH4_5g25080 Fragaria vesca HOM05D007595 ORTHO05D009570 2.6e-74 283.9 256 58.2
Manes.01G274800 Manihot esculenta HOM05D007595 ORTHO05D009570 5.8e-74 282.7 276 53.6
Atru.chr5.81 Acer truncatum HOM05D007595 ORTHO05D009570 2.9e-73 280.4 247 58.3
Duzib138G0502 Durio zibethinus HOM05D007595 ORTHO05D009570 2.9e-73 280.4 251 58.2
Ciclev10018805m.g Citrus clementina HOM05D007595 ORTHO05D009570 4.9e-73 279.6 293 50.9
Potri.014G052800 Populus trichocarpa HOM05D007595 ORTHO05D009570 1.9e-72 277.7 253 55.7
Gohir.A12G098700 Gossypium hirsutum HOM05D007595 ORTHO05D009570 3.2e-72 276.9 251 57.0
Sabra14G0039800 Salix brachista HOM05D007595 ORTHO05D009570 3.5e-71 273.5 252 54.4
MELO3C006272.2 Cucumis melo HOM05D007595 ORTHO05D009570 1.0e-70 271.9 250 54.4
Lsat_1_v5_gn_4_38381 Lactuca sativa HOM05D007595 ORTHO05D009570 8.7e-70 268.9 448 62.9
CsaV3_3G010510 Cucumis sativus L. HOM05D007595 ORTHO05D009570 2.5e-69 267.3 249 54.2
ClCG05G002930 Citrullus lanatus HOM05D007595 ORTHO05D009570 1.3e-68 265.0 246 53.3
MSTRG.20666 Avicennia marina HOM05D007595 ORTHO05D009570 1.6e-68 264.6 439 62.6
SHI13644 Sapria himalayana HOM05D007595 ORTHO05D009570 1.6e-68 264.6 245 55.1
Sed0013429 Sechium edule HOM05D007595 ORTHO05D009570 3.6e-68 263.5 246 53.7
THA.LOC104811608 Tarenaya hassleriana HOM05D007595 ORTHO05D009570 1.9e-64 251.1 243 53.5
Lalb_Chr16g0384971 Lupinus albus HOM05D007595 ORTHO05D009570 3.2e-64 250.4 249 54.6
Glyma.07G218100 Glycine max HOM05D007595 ORTHO05D009570 4.2e-64 250.0 245 53.5
Sc22g0000140 Simmondsia chinensis HOM05D007595 ORTHO05D009570 4.2e-64 250.0 285 48.4
Sc22g0001280 Simmondsia chinensis HOM05D007595 ORTHO05D009570 4.2e-64 250.0 285 48.4
vmacro09088 Vaccinium macrocarpon HOM05D007595 ORTHO05D009570 5.5e-64 249.6 252 54.4
Sopen01g035520 Solanum pennellii HOM05D007595 ORTHO05D009570 7.1e-64 249.2 232 55.2
Peaxi162Scf00793g00032 Petunia axillaris HOM05D007595 ORTHO05D009570 2.1e-63 247.7 237 54.9
Psat3g072800 Pisum sativum HOM05D007595 ORTHO05D009570 2.3e-62 244.2 248 53.6
Rhsim05G0178700 Rhododendron simsii HOM05D007595 ORTHO05D009570 1.9e-61 241.1 229 54.1
MD02G1222500 Malus domestica HOM05D007595 ORTHO05D009570 7.4e-61 239.2 184 64.1
VMungo0251G3282 Vigna mungo HOM05D007595 ORTHO05D009570 7.4e-61 239.2 248 50.0
Lj1g0026949 Lotus japonicus HOM05D007595 ORTHO05D009570 1.3e-60 238.4 244 52.5
Phvul.002G094300 Phaseolus vulgaris HOM05D007595 ORTHO05D009570 1.6e-60 238.0 244 50.4
Migut.B01494 Erythranthe guttata HOM05D007595 ORTHO05D009570 1.8e-59 234.6 432 62.0
Medtr7g091470 Medicago truncatula HOM05D007595 ORTHO05D009570 1.5e-58 231.5 235 51.1
Haze_02895 Corylus avellana HOM05D007595 ORTHO05D009570 8.4e-57 225.7 175 65.7
Cc02_g25530 Coffea canephora HOM05D007595 ORTHO05D009570 2.5e-56 224.2 206 53.9
CSS0007679 Camellia sinensis var. sinensis HOM05D007595 ORTHO05D009570 4.2e-56 223.4 184 62.0
RcHm_v2.0_Chr7g0215291 Rosa chinensis HOM05D007595 ORTHO05D009570 1.6e-55 221.5 187 59.9
AUR62008574 Chenopodium quinoa HOM05D007595 ORTHO05D009570 2.1e-55 221.1 184 58.2
SalBow5G3719 Salvia bowleyana HOM05D007595 ORTHO05D009570 6.0e-55 219.5 244 48.0
MBI04_g20744_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D001765 1.0e-54 218.8 266 46.6
AUR62034666 Chenopodium quinoa HOM05D007595 ORTHO05D009570 2.3e-54 217.6 184 57.6
CDE04G2406 Ceratophyllum demersum HOM05D007595 ORTHO05D009570 1.5e-53 214.9 247 45.7
Actinidia05786 Actinidia chinensis HOM05D003161 ORTHO05D009570 1.9e-53 214.5 181 60.8
COL.COLO4_12359 Corchorus olitorius HOM05D007595 ORTHO05D009570 1.9e-53 214.5 184 58.2
CAN.G756.22 Capsicum annuum HOM05D007595 ORTHO05D009570 3.3e-53 213.8 209 52.2
Ah.08g212430 Amaranthus hybridus HOM05D007595 ORTHO05D009570 9.6e-53 212.2 184 57.1
RcHm_v2.0_Chr4g0407101 Rosa chinensis HOM05D007595 ORTHO05D009570 1.6e-52 211.5 187 58.8
PGSC0003DMG400001689 Solanum tuberosum HOM05D007595 ORTHO05D009570 3.7e-52 210.3 180 57.8
Ca_08452_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 4.8e-52 209.9 181 60.8
Ca_08455_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 4.8e-52 209.9 181 60.8
PSO675G4153 Papaver somniferum HOM05D007595 ORTHO05D009570 4.8e-52 209.9 436 59.9
EL10Ac7g17423 Beta vulgaris HOM05D007595 ORTHO05D009570 8.2e-52 209.1 185 55.7
PSO732G0035 Papaver somniferum HOM05D007595 ORTHO05D009570 8.2e-52 209.1 437 59.3
Oeu004640.1 Olea europaea HOM05D007595 ORTHO05D009570 6.9e-51 206.1 180 60.0
SGA_v2.0_scaffold34G13580 Striga asiatica HOM05D007595 ORTHO05D009570 1.7e-49 201.4 246 43.5
Nitab4.5_0000563g0010 Nicotiana tabacum HOM05D007595 ORTHO05D009570 5.5e-48 196.4 253 43.1
Lalb_Chr05g0219501 Lupinus albus HOM05D007595 ORTHO05D009570 1.6e-47 194.9 202 53.5
PGR042G2115 Punica granatum HOM05D007595 ORTHO05D009570 1.0e-46 192.2 181 56.9
Aqoxy7G02148 Aquilegia oxysepala HOM05D007595 ORTHO05D009570 4.3e-45 186.8 229 45.9
Lj9C550T12 Lonicera japonica HOM05D007595 ORTHO05D009570 7.4e-45 186.0 170 56.5
Nn1g00708 Nelumbo nucifera HOM05D007595 ORTHO05D009570 2.2e-44 184.5 465 55.7
PSO732G0412 Papaver somniferum HOM05D007595 ORTHO05D009570 2.0e-42 177.9 213 46.9
Cc11_g12050 Coffea canephora HOM05D007595 ORTHO05D009570 4.5e-42 176.8 318 67.9
Dinv44032 Davidia involucrata HOM05D007595 ORTHO05D009570 1.7e-41 174.9 174 53.4
TPR.G3705 Trifolium pratense HOM05D007595 ORTHO05D009570 2.9e-41 174.1 322 68.9
Glyma.20G014500 Glycine max HOM05D007595 ORTHO05D009570 5.0e-41 173.3 151 55.0
Nitab4.5_0004273g0020 Nicotiana tabacum HOM05D007595 ORTHO05D009570 6.5e-41 172.9 172 52.3
Aa31LG1G28920 Aethionema arabicum HOM05D007595 ORTHO05D009570 5.5e-40 169.9 334 68.0
HPP92_014879 Vanilla planifolia HOM05D007595 ORTHO05D009570 3.6e-39 167.2 413 54.0
Gohir.D12G101900 Gossypium hirsutum HOM05D007595 ORTHO05D009570 2.2e-36 157.9 120 63.3
Thecc.01G401700 Theobroma cacao HOM05D007595 ORTHO05D009570 3.7e-36 157.1 117 65.0
Rhsim07G0038800 Rhododendron simsii HOM05D007595 ORTHO05D009570 1.4e-35 155.2 361 50.1
HanXRQChr14g0457401 Helianthus annuus HOM05D007595 ORTHO05D009570 3.4e-34 150.6 181 43.6
DCAR_029507 Daucus carota HOM05D007595 ORTHO05D009570 2.1e-31 141.4 146 51.4
TAR629G2414 Trochodendron aralioides HOM05D007595 ORTHO05D009570 3.9e-30 137.1 127 55.9
RcHm_v2.0_Chr4g0407111 Rosa chinensis HOM05D007595 ORTHO05D009570 3.5e-26 124.0 94 61.7
Gorai.008G111100 Gossypium raimondii HOM05D007595 ORTHO05D009570 3.8e-25 120.6 94 60.6
GSVIVG01018339001 Vitis vinifera HOM05D007595 ORTHO05D009570 3.8e-25 120.6 94 56.4
Zm00001eb224150 Zea mays HOM05D011046 ORTHO05D013342 1.1e-24 119.0 116 51.7
Zm00001eb121340 Zea mays HOM05D011046 ORTHO05D013342 1.6e-23 115.2 121 48.8
Zm00001eb272070 Zea mays HOM05D011046 ORTHO05D013342 1.6e-23 115.2 121 48.8
Zm00001eb324030 Zea mays HOM05D011046 ORTHO05D013342 1.6e-23 115.2 121 48.8
Zm00001eb336430 Zea mays HOM05D011046 ORTHO05D013342 1.6e-23 115.2 121 48.8
Zm00001eb398710 Zea mays HOM05D011046 ORTHO05D013342 1.6e-23 115.2 121 48.8
Zm00001eb427360 Zea mays HOM05D011046 ORTHO05D013342 1.6e-23 115.2 121 48.8
Zm00001eb442860 Zea mays HOM05D011046 ORTHO05D013342 1.6e-23 115.2 121 48.8
AUR62026015 Chenopodium quinoa HOM05D007595 ORTHO05D009570 2.1e-23 114.8 98 54.1
Zm00001eb191870 Zea mays HOM05D011046 ORTHO05D013342 4.7e-23 113.6 121 47.9
Zm00001eb059330 Zea mays HOM05D011046 ORTHO05D013342 1.8e-22 111.7 121 47.9
Zm00001eb210080 Zea mays HOM05D011046 ORTHO05D013342 4.0e-22 110.5 115 49.6
Zm00001eb367370 Zea mays HOM05D011046 ORTHO05D013342 4.0e-22 110.5 115 49.6
Solyc01g088670.3 Solanum lycopersicum HOM05D007595 ORTHO05D009570 3.1e-19 100.9 70 65.7
ECA234G2641 Erigeron canadensis HOM05D007595 ORTHO05D009570 5.0e-17 93.6 116 41.4
Rhsim07G0038700 Rhododendron simsii HOM05D001455 ORTHO05D002670 1.9e-16 91.7 139 39.6
Lsat_1_v5_gn_4_139241 Lactuca sativa HOM05D004783 ORTHO05D005581 2.5e-08 64.7 139 27.3
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 3.2e-08 64.3 117 30.8
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 3.2e-08 64.3 223 24.7
Eucgr.D01185 Eucalyptus grandis HOM05D007595 ORTHO05D009570 4.2e-08 63.9 52 59.6
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 5.5e-08 63.5 131 29.0
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 5.5e-08 63.5 197 22.3
ATR0618G378 Amborella trichopoda HOM05D000891 ORTHO05D000761 9.5e-08 62.8 106 31.1
Lsat_1_v5_gn_4_139140 Lactuca sativa HOM05D004783 ORTHO05D005581 9.5e-08 62.8 132 28.8
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 1.2e-07 62.4 131 29.0
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 2.1e-07 61.6 132 28.0
Sp5g29730 Schrenkiella parvula HOM05D002453 ORTHO05D002107 2.1e-07 61.6 109 33.0
Potri.014G056400 Populus trichocarpa HOM05D000104 ORTHO05D009920 2.7e-07 61.2 100 32.0
QL08p056824 Quercus lobata HOM05D005287 ORTHO05D006893 2.7e-07 61.2 107 27.1
GSVIVG01008125001 Vitis vinifera HOM05D005362 ORTHO05D006895 2.7e-07 61.2 127 33.1
HanXRQChr15g0495131 Helianthus annuus HOM05D004783 ORTHO05D005581 3.6e-07 60.8 121 31.4
Cfa017505 Carpinus fangiana HOM05D000855 ORTHO05D008530 4.7e-07 60.5 131 27.5
Haze_20657 Corylus avellana HOM05D000855 ORTHO05D008530 4.7e-07 60.5 131 27.5
Aa31LG8G16330 Aethionema arabicum HOM05D008657 ORTHO05D010869 6.1e-07 60.1 205 23.9
Glyma.10G162500 Glycine max HOM05D005362 ORTHO05D006895 6.1e-07 60.1 133 32.3
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 8.0e-07 59.7 117 27.4
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 8.0e-07 59.7 117 27.4
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 8.0e-07 59.7 131 26.7
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 8.0e-07 59.7 151 25.8
Potri.010G234500 Populus trichocarpa HOM05D002453 ORTHO05D002107 1.0e-06 59.3 89 34.8
Sc06g0009870 Simmondsia chinensis HOM05D003210 ORTHO05D000001 1.0e-06 59.3 123 29.3
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 1.0e-06 59.3 147 23.1
Manes.10G042800 Manihot esculenta HOM05D005287 ORTHO05D006893 1.4e-06 58.9 107 28.0
EL10Ac6g15188 Beta vulgaris HOM05D003210 ORTHO05D000001 1.8e-06 58.5 127 26.8
SEGI_19561 Sequoiadendron giganteum HOM05D007496 ORTHO05D009431 1.8e-06 58.5 94 28.7
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 2.3e-06 58.2 118 29.7
BcaB06g28282 Brassica carinata HOM05D007623 ORTHO05D009641 2.3e-06 58.2 123 30.9
FAN06G4216 Fragaria x ananassa HOM05D000104 ORTHO05D009920 2.3e-06 58.2 99 30.3
FAN06G4654 Fragaria x ananassa HOM05D000104 ORTHO05D009920 2.3e-06 58.2 99 30.3
Lj5g0006814 Lotus japonicus HOM05D005287 ORTHO05D006893 2.3e-06 58.2 107 27.1
AL8G12410 Arabidopsis lyrata HOM05D002986 ORTHO05D007611 3.0e-06 57.8 108 25.0
Ca_11448_v3 Cicer arietinum L. HOM05D000855 ORTHO05D008530 3.0e-06 57.8 131 26.7
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 3.0e-06 57.8 174 27.0
Ah.03g137460 Amaranthus hybridus HOM05D007623 ORTHO05D009641 4.0e-06 57.4 182 23.6
MBI04_g27244_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D009920 4.0e-06 57.4 234 23.5
SMO203G0052 Selaginella moellendorffii HOM05D005973 ORTHO05D038438 4.0e-06 57.4 114 27.2
Haze_07333 Corylus avellana HOM05D002453 ORTHO05D002107 5.2e-06 57.0 98 33.7
Duzib235G0042 Durio zibethinus HOM05D002986 ORTHO05D007611 5.2e-06 57.0 107 27.1
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 5.2e-06 57.0 91 33.0
QL07p045308 Quercus lobata HOM05D000855 ORTHO05D008530 5.2e-06 57.0 120 29.2
TAR371G1139 Trochodendron aralioides HOM05D005362 ORTHO05D006895 5.2e-06 57.0 127 31.5
Actinidia35047 Actinidia chinensis HOM05D005362 ORTHO05D006895 6.8e-06 56.6 128 32.0
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 6.8e-06 56.6 117 25.6
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 6.8e-06 56.6 131 26.0
FAN08G0864 Fragaria x ananassa HOM05D005362 ORTHO05D006895 6.8e-06 56.6 137 30.7
FAN13G2767 Fragaria x ananassa HOM05D005362 ORTHO05D006895 6.8e-06 56.6 137 31.4
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 8.8e-06 56.2 117 26.5
Lj6A773T130 Lonicera japonica HOM05D007623 ORTHO05D009641 8.8e-06 56.2 184 20.1
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 8.8e-06 56.2 91 31.9


User provided reference genes

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