Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1429 Cannabis sativa HOM05D002504 ORTHO05D007555 8.6e-224 780.0 400 100.0
Prupe.5G187600 Prunus persica HOM05D002504 ORTHO05D007555 2.4e-133 479.6 391 63.7
RcHm_v2.0_Chr7g0180701 Rosa chinensis HOM05D002504 ORTHO05D007555 5.4e-133 478.4 391 63.4
FAN08G0998 Fragaria x ananassa HOM05D002504 ORTHO05D007555 8.6e-131 471.1 392 62.8
FvH4_5g15370 Fragaria vesca HOM05D002504 ORTHO05D007555 4.3e-130 468.8 392 62.8
FAN04G1481 Fragaria x ananassa HOM05D002504 ORTHO05D007555 5.6e-130 468.4 392 62.5
FAN13G2799 Fragaria x ananassa HOM05D002504 ORTHO05D007555 1.6e-129 466.8 392 62.0
FAN18G2091 Fragaria x ananassa HOM05D002504 ORTHO05D007555 1.8e-128 463.4 392 62.2
MD14G1195800 Malus domestica HOM05D002504 ORTHO05D007555 1.0e-123 447.6 388 61.9
Manes.14G075600 Manihot esculenta HOM05D002504 ORTHO05D007555 1.3e-123 447.2 391 59.6
Haze_07368 Corylus avellana HOM05D002504 ORTHO05D007555 6.6e-123 444.9 391 58.8
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 1.9e-122 443.4 389 58.9
Cpa.g.sc17.218 Carica papaya HOM05D002504 ORTHO05D007555 1.2e-121 440.7 388 58.2
Ciclev10020527m.g Citrus clementina HOM05D002504 ORTHO05D007555 4.7e-121 438.7 390 59.2
Gohir.A11G029531 Gossypium hirsutum HOM05D002504 ORTHO05D007555 1.4e-120 437.2 388 60.1
Cfa018981 Carpinus fangiana HOM05D002504 ORTHO05D007555 3.1e-120 436.0 391 58.1
CSS0041593 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 4.0e-120 435.6 388 58.5
CiPaw.11G039400 Carya illinoinensis HOM05D002504 ORTHO05D007555 5.2e-120 435.3 378 59.8
Duzib068G0930 Durio zibethinus HOM05D002504 ORTHO05D007555 5.2e-120 435.3 396 58.1
Lj4g0008726 Lotus japonicus HOM05D002504 ORTHO05D007555 5.2e-120 435.3 391 57.0
CSS0049848 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 8.9e-120 434.5 388 58.5
Dinv09821 Davidia involucrata HOM05D002504 ORTHO05D007555 1.2e-119 434.1 389 57.8
TPR.G5442 Trifolium pratense HOM05D002504 ORTHO05D007555 1.2e-119 434.1 399 56.4
QL10p015753 Quercus lobata HOM05D002504 ORTHO05D007555 2.6e-119 433.0 391 57.5
Potri.015G064300 Populus trichocarpa HOM05D002504 ORTHO05D007555 4.4e-119 432.2 389 58.4
TWI39G0444 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 7.5e-119 431.4 389 57.1
TWI38G0829 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 1.7e-118 430.3 389 55.8
ClCG01G016490 Citrullus lanatus HOM05D002504 ORTHO05D007555 2.9e-118 429.5 389 58.6
Sed0014360 Sechium edule HOM05D002504 ORTHO05D007555 2.9e-118 429.5 390 58.2
Gohir.D11G032900 Gossypium hirsutum HOM05D002504 ORTHO05D007555 6.4e-118 428.3 388 59.5
Gorai.007G035700 Gossypium raimondii HOM05D002504 ORTHO05D007555 8.3e-118 427.9 388 59.8
Sabra15G0090100 Salix brachista HOM05D002504 ORTHO05D007555 1.9e-117 426.8 391 56.8
Actinidia34980 Actinidia chinensis HOM05D002504 ORTHO05D007555 4.1e-117 425.6 391 56.5
Medtr3g078030 Medicago truncatula HOM05D002504 ORTHO05D007555 4.1e-117 425.6 388 56.7
QL10p005074 Quercus lobata HOM05D002504 ORTHO05D007555 4.1e-117 425.6 391 55.8
COL.COLO4_05456 Corchorus olitorius HOM05D002504 ORTHO05D007555 1.2e-116 424.1 388 58.0
Ca_16191_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007555 1.6e-116 423.7 392 54.6
Lalb_Chr12g0196751 Lupinus albus HOM05D002504 ORTHO05D007555 2.0e-116 423.3 390 56.2
Thecc.03G080700 Theobroma cacao HOM05D002504 ORTHO05D007555 2.0e-116 423.3 388 58.0
TPR.G1695 Trifolium pratense HOM05D002504 ORTHO05D007555 6.0e-116 421.8 399 55.1
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 7.8e-116 421.4 391 53.7
MELO3C007518.2 Cucumis melo HOM05D002504 ORTHO05D007555 7.8e-116 421.4 389 57.3
arahy.Tifrunner.gnm1.ann1.AAW7H5 Arachis hypogaea HOM05D002504 ORTHO05D007555 1.3e-115 420.6 391 53.7
VMungo1215G2696 Vigna mungo HOM05D002504 ORTHO05D007555 1.3e-115 420.6 391 54.7
arahy.Tifrunner.gnm1.ann1.XHUI7I Arachis hypogaea HOM05D002504 ORTHO05D007555 2.3e-115 419.9 391 53.5
arahy.Tifrunner.gnm1.ann1.A4B6B0 Arachis hypogaea HOM05D002504 ORTHO05D007555 8.6e-115 417.9 398 52.3
CsaV3_6G042770 Cucumis sativus L. HOM05D002504 ORTHO05D007555 1.5e-114 417.2 396 56.1
THA.LOC104808328 Tarenaya hassleriana HOM05D002504 ORTHO05D007555 9.5e-114 414.5 391 55.2
TAR374G0022 Trochodendron aralioides HOM05D002504 ORTHO05D007555 1.2e-113 414.1 389 54.8
TAR622G0915 Trochodendron aralioides HOM05D002504 ORTHO05D007555 6.2e-113 411.8 389 55.8
Glyma.17G097600 Glycine max HOM05D002504 ORTHO05D007555 1.5e-111 407.1 381 57.0
Rhsim12G0158700 Rhododendron simsii HOM05D002504 ORTHO05D007555 9.8e-111 404.4 389 55.3
Phvul.003G192200 Phaseolus vulgaris HOM05D002504 ORTHO05D007555 2.9e-110 402.9 391 51.9
Atru.BG.192.p Acer truncatum HOM05D002504 ORTHO05D007555 5.4e-109 398.7 344 59.9
Actinidia19055 Actinidia chinensis HOM05D002504 ORTHO05D007555 1.6e-108 397.1 380 54.5
Psat5g114360 Pisum sativum HOM05D002504 ORTHO05D007555 1.6e-108 397.1 398 51.8
Cc04_g15430 Coffea canephora HOM05D002504 ORTHO05D007555 2.3e-107 393.3 388 52.1
Nn3g16999 Nelumbo nucifera HOM05D002504 ORTHO05D007555 5.1e-107 392.1 395 53.9
PGR083G1477 Punica granatum HOM05D002504 ORTHO05D007555 2.1e-105 386.7 390 53.1
AT1G18850 Arabidopsis thaliana HOM05D002504 ORTHO05D007555 1.1e-104 384.4 396 52.8
Oeu022629.1 Olea europaea HOM05D002504 ORTHO05D007555 3.4e-103 379.4 389 50.4
Carub.0001s1850 Capsella rubella HOM05D002504 ORTHO05D007555 5.8e-103 378.6 412 51.0
AL1G31390 Arabidopsis lyrata HOM05D002504 ORTHO05D007555 1.7e-102 377.1 396 52.8
A06p15070 Brassica napus HOM05D002504 ORTHO05D007555 1.7e-102 377.1 388 52.3
Eucgr.A00822 Eucalyptus grandis HOM05D002504 ORTHO05D007555 2.9e-102 376.3 389 51.2
Aa31LG7G3620 Aethionema arabicum HOM05D002504 ORTHO05D007555 4.9e-102 375.6 391 52.2
CARHR019500 Cardamine hirsuta HOM05D002504 ORTHO05D007555 4.9e-102 375.6 391 52.4
BraA06t24622Z Brassica rapa HOM05D002504 ORTHO05D007555 1.1e-101 374.4 388 51.5
Thhalv10007868m.g Eutrema salsugineum HOM05D002504 ORTHO05D007555 1.1e-101 374.4 389 54.0
SHI03355 Sapria himalayana HOM05D002504 ORTHO05D007555 1.9e-101 373.6 401 51.4
C05p17270 Brassica napus HOM05D002504 ORTHO05D007555 1.0e-99 367.9 415 49.6
BolC5t30427H Brassica oleracea HOM05D002504 ORTHO05D007555 1.0e-99 367.9 415 49.6
Sp1g16830 Schrenkiella parvula HOM05D002504 ORTHO05D007555 6.6e-99 365.2 419 49.9
Glyma.05G029300 Glycine max HOM05D002504 ORTHO05D007555 1.1e-98 364.4 393 50.9
BcaB07g31903 Brassica carinata HOM05D002504 ORTHO05D007555 1.5e-98 364.0 420 49.8
BcaC05g25787 Brassica carinata HOM05D002504 ORTHO05D007555 2.5e-98 363.2 415 48.9
Aqoxy3G03288 Aquilegia oxysepala HOM05D002504 ORTHO05D007555 1.6e-97 360.5 395 50.9
Sc10g0009970 Simmondsia chinensis HOM05D002504 ORTHO05D007555 1.6e-97 360.5 389 51.2
Lsat_1_v5_gn_1_10961 Lactuca sativa HOM05D002504 ORTHO05D007555 1.5e-95 354.0 405 48.4
MBI03_g18947_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 2.0e-95 353.6 390 48.2
Peaxi162Scf00013g00007 Petunia axillaris HOM05D002504 ORTHO05D007555 2.9e-94 349.7 391 46.8
Sopen06g027310 Solanum pennellii HOM05D002504 ORTHO05D007555 9.3e-93 344.7 399 44.1
Solyc06g071010.4 Solanum lycopersicum HOM05D002504 ORTHO05D007555 2.7e-92 343.2 399 44.4
SalBow5G4081 Salvia bowleyana HOM05D002504 ORTHO05D007555 1.3e-91 340.9 389 47.8
Nitab4.5_0000269g0140 Nicotiana tabacum HOM05D002504 ORTHO05D007555 2.3e-91 340.1 392 45.7
PGSC0003DMG400033071 Solanum tuberosum HOM05D002504 ORTHO05D007555 3.0e-91 339.7 388 45.4
Nitab4.5_0007394g0010 Nicotiana tabacum HOM05D002504 ORTHO05D007555 9.6e-90 334.7 392 44.9
EL10As5g23568 Beta vulgaris HOM05D002504 ORTHO05D007555 6.2e-89 332.0 394 48.7
CAN.G628.37 Capsicum annuum HOM05D002504 ORTHO05D007555 2.4e-88 330.1 392 44.9
DCAR_001955 Daucus carota HOM05D002504 ORTHO05D007555 9.0e-88 328.2 391 46.0
MSTRG.4344 Avicennia marina HOM05D002504 ORTHO05D007555 2.0e-87 327.0 388 46.4
HanXRQChr06g0178031 Helianthus annuus HOM05D002504 ORTHO05D007555 5.8e-87 325.5 388 46.6
Migut.I00134 Erythranthe guttata HOM05D002504 ORTHO05D007555 1.4e-85 320.9 396 46.5
PSO832G2768 Papaver somniferum HOM05D002504 ORTHO05D007555 1.4e-85 320.9 392 46.4
PSO591G0510 Papaver somniferum HOM05D002504 ORTHO05D007555 3.2e-85 319.7 392 46.7
Ah.02g112510 Amaranthus hybridus HOM05D002504 ORTHO05D007555 1.2e-84 317.8 394 46.4
MBI03_g28522_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 1.2e-84 317.8 389 44.7
MBI11_g21312_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 1.2e-84 317.8 389 44.7
AUR62038455 Chenopodium quinoa HOM05D002504 ORTHO05D007555 3.5e-84 316.2 396 46.7
AUR62042153 Chenopodium quinoa HOM05D002504 ORTHO05D007555 1.7e-83 313.9 396 46.0
DCAR_001117 Daucus carota HOM05D002504 ORTHO05D007555 5.1e-83 312.4 396 44.4
GSVIVG01008049001 Vitis vinifera HOM05D002504 ORTHO05D007555 1.5e-82 310.8 318 53.1
HPP92_004873 Vanilla planifolia HOM05D002504 ORTHO05D007555 2.5e-82 310.1 396 43.4
CDE07G0237 Ceratophyllum demersum HOM05D002504 ORTHO05D007555 3.6e-81 306.2 390 43.1
Lj5P114T15 Lonicera japonica HOM05D002504 ORTHO05D007555 3.8e-78 296.2 262 58.0
PSO063G6525 Papaver somniferum HOM05D002504 ORTHO05D007555 6.4e-78 295.4 392 45.7
Lj7P436T44 Lonicera japonica HOM05D002504 ORTHO05D007555 2.4e-77 293.5 316 51.3
Nn5g27262 Nelumbo nucifera HOM05D002504 ORTHO05D007555 3.2e-77 293.1 285 54.0
unitig_52.g17495 Utricularia gibba HOM05D002504 ORTHO05D007555 1.6e-76 290.8 389 43.2
SGA_v2.0_scaffold56G20046 Striga asiatica HOM05D002504 ORTHO05D007555 2.1e-68 263.8 336 41.7
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 1.8e-67 260.8 302 45.7
Dinv02434 Davidia involucrata HOM05D002504 ORTHO05D007555 3.2e-61 240.0 174 68.4
ATR1120G016 Amborella trichopoda HOM05D002504 ORTHO05D007555 9.7e-58 228.4 419 37.2
Os01g0112100 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007555 1.5e-42 177.9 227 41.4
Zm00001eb334590 Zea mays HOM05D002504 ORTHO05D007555 2.5e-37 160.6 396 29.3
Zm00001eb126250 Zea mays HOM05D002504 ORTHO05D007555 6.1e-36 156.0 365 30.4
Duzib205G0461 Durio zibethinus HOM05D002504 ORTHO05D007555 5.2e-35 152.9 226 44.7
SEGI_18201 Sequoiadendron giganteum HOM05D002504 ORTHO05D007555 3.7e-33 146.7 337 31.8
Aa31LG9G8990 Aethionema arabicum HOM05D000710 ORTHO05D000336 7.5e-26 122.5 248 36.7
Ciclev10033409m.g Citrus clementina HOM05D002504 ORTHO05D007555 1.4e-24 118.2 182 41.8
Nn5g27265 Nelumbo nucifera HOM05D002504 ORTHO05D007555 5.4e-24 116.3 448 28.1
Pp3c1_3820 Physcomitrium patens HOM05D002504 ORTHO05D007555 7.0e-24 115.9 439 25.5
Pp3c1_3850 Physcomitrium patens HOM05D002504 ORTHO05D007555 7.0e-24 115.9 439 25.5
BcaB07g32205 Brassica carinata HOM05D002504 ORTHO05D007555 1.3e-22 111.7 391 29.2
Mapoly0028s0021 Marchantia polymorpha HOM05D002504 ORTHO05D007555 9.5e-21 105.5 311 27.0
Sabra12G0030300 Salix brachista HOM05D002504 ORTHO05D007555 1.6e-20 104.8 174 42.5
AagrBONN_evm.TU.Sc2ySwM_369.370 Anthoceros agrestis HOM05D002504 ORTHO05D007555 4.4e-18 96.7 351 26.2
arahy.Tifrunner.gnm1.ann1.8LRZ9F Arachis hypogaea HOM05D002504 ORTHO05D007555 1.1e-16 92.0 105 41.0
SMO367G0630 Selaginella moellendorffii HOM05D002504 ORTHO05D007555 5.6e-13 79.7 277 24.9
CBR_g26261 Chara braunii HOM05D002504 ORTHO05D007555 5.7e-10 69.7 274 28.1


User provided reference genes

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