Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 3.3e-228 794.7 386 100.0
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 7.5e-124 448.0 404 57.7
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 9.2e-122 441.0 404 56.2
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 8.0e-118 427.9 398 57.3
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 3.7e-115 419.1 401 56.1
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 2.4e-114 416.4 402 53.7
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 3.9e-112 409.1 397 53.4
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 5.6e-111 405.2 393 53.7
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 1.6e-110 403.7 393 53.7
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 2.1e-110 403.3 396 53.3
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 1.1e-109 401.0 404 53.5
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.4e-109 400.6 393 53.2
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.8e-109 400.2 393 53.4
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.2e-108 397.5 400 53.5
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 2.2e-107 393.3 403 50.4
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 4.9e-107 392.1 391 51.2
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 1.9e-106 390.2 396 51.5
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 7.0e-106 388.3 399 51.1
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 1.2e-105 387.5 400 51.0
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 2.7e-105 386.3 386 54.7
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 3.5e-105 386.0 395 51.4
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 5.0e-104 382.1 391 52.4
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 8.6e-104 381.3 402 50.7
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 1.9e-103 380.2 403 50.4
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 2.5e-103 379.8 406 51.2
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 4.3e-103 379.0 406 50.7
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 3.6e-102 375.9 402 50.2
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 4.7e-102 375.6 401 49.6
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 6.2e-102 375.2 396 52.5
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 1.1e-101 374.4 403 50.1
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 1.8e-101 373.6 406 50.0
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 1.2e-100 370.9 404 51.0
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 1.5e-100 370.5 406 50.0
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 8.3e-99 364.8 388 50.0
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 1.1e-98 364.4 401 50.6
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 1.4e-98 364.0 404 49.5
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 2.4e-98 363.2 397 49.6
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 4.1e-98 362.5 404 49.5
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 7.1e-98 361.7 401 50.6
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 1.2e-97 360.9 381 49.9
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 1.2e-97 360.9 390 49.0
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 5.1e-96 355.5 373 51.2
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 5.1e-96 355.5 420 47.4
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 1.9e-95 353.6 398 49.2
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 4.3e-95 352.4 393 48.3
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 5.6e-95 352.1 393 47.3
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 1.8e-93 347.1 394 48.2
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 2.4e-93 346.7 401 47.4
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 3.1e-93 346.3 382 49.5
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 5.2e-93 345.5 377 49.6
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 1.5e-92 344.0 383 49.1
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 1.5e-92 344.0 383 49.1
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 4.4e-92 342.4 382 49.2
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 4.4e-92 342.4 379 49.9
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 5.8e-92 342.0 388 47.4
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 6.4e-91 338.6 400 45.2
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 1.4e-90 337.4 395 46.3
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 1.4e-90 337.4 392 46.7
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 2.4e-90 336.7 423 46.1
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 4.1e-90 335.9 385 48.8
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 9.2e-90 334.7 334 53.3
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 1.2e-89 334.3 411 45.0
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 3.5e-89 332.8 411 44.8
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 4.6e-89 332.4 330 53.0
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 6.0e-89 332.0 388 45.4
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 7.8e-89 331.6 409 45.5
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 3.9e-88 329.3 407 45.7
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 7.3e-87 325.1 395 44.8
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 9.6e-87 324.7 384 49.5
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 1.6e-86 323.9 410 45.6
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 8.1e-86 321.6 375 48.0
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 1.1e-85 321.2 356 49.7
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 1.4e-85 320.9 438 41.6
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 4.0e-85 319.3 372 46.2
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 3.4e-84 316.2 383 45.2
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 9.9e-84 314.7 405 45.4
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 9.9e-84 314.7 384 44.5
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 1.6e-81 307.4 403 41.9
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 1.0e-80 304.7 373 45.0
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 3.9e-80 302.8 400 44.0
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 2.1e-78 297.0 394 42.9
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 3.1e-77 293.1 382 44.8
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 2.6e-76 290.0 449 39.9
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 1.6e-73 280.8 265 55.8
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 4.3e-71 272.7 261 50.6
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 9.6e-71 271.6 383 41.8
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 2.1e-70 270.4 411 41.6
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 4.0e-69 266.2 269 51.7
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 1.2e-68 264.6 182 68.7
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 4.5e-68 262.7 278 50.4
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 4.9e-67 259.2 317 46.7
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 6.4e-67 258.8 272 51.5
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 7.9e-65 251.9 262 50.8
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 1.3e-62 244.6 302 45.4
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 1.5e-60 237.7 242 50.4
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 8.4e-59 231.9 232 49.1
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 1.2e-57 228.0 254 48.4
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 4.6e-57 226.1 294 43.5
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 8.2e-54 215.3 311 39.5
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 5.3e-53 212.6 398 35.4
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 1.4e-50 204.5 322 40.1
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 4.2e-50 203.0 391 34.5
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 3.9e-48 196.4 459 32.2
Oeu031680.1 Olea europaea HOM05D005922 ORTHO05D006934 1.3e-30 138.3 182 42.3
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 1.7e-30 137.9 143 52.4
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 1.7e-30 137.9 305 33.1
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 6.3e-30 136.0 141 51.8
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.1e-26 125.2 169 42.6
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 4.8e-22 109.8 128 49.2
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 1.6e-20 104.8 79 55.7
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 1.5e-18 98.2 68 67.6
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 5.5e-18 96.3 197 33.5
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 7.2e-18 95.9 65 70.8
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 1.4e-16 91.7 63 61.9
CDE11G0599 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 6.8e-16 89.4 91 45.1
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 1.2e-15 88.6 89 47.2
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 4.4e-15 86.7 108 41.7
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 4.4e-15 86.7 51 70.6
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 2.2e-14 84.3 48 68.8
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 2.2e-14 84.3 48 68.8
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 2.2e-14 84.3 81 46.9
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 2.2e-14 84.3 82 58.5
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 4.8e-14 83.2 88 53.4
A02p14700 Brassica napus HOM05D005922 ORTHO05D006934 6.3e-14 82.8 170 31.8
BraA02t06537Z Brassica rapa HOM05D005922 ORTHO05D006934 6.3e-14 82.8 170 31.8
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 1.4e-13 81.6 48 68.8
SEGI_24854 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 1.2e-12 78.6 226 28.3
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 1.3e-11 75.1 108 35.2
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 2.9e-11 73.9 42 88.1
BolC2t08514H Brassica oleracea HOM05D005922 ORTHO05D006934 8.9e-08 62.4 144 30.6


User provided reference genes

Program Settings