Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1406 Cannabis sativa HOM05D003115 ORTHO05D003595 3.9e-249 864.4 444 100.0
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 8.9e-145 517.7 431 64.0
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 1.2e-144 517.3 433 62.4
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 9.8e-144 514.2 433 62.6
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 4.9e-143 511.9 433 62.6
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 4.9e-143 511.9 433 62.6
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 4.9e-143 511.9 433 62.8
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 6.3e-143 511.5 432 62.5
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 4.5e-141 505.4 430 62.1
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 8.6e-140 501.1 430 61.9
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 2.5e-139 499.6 433 61.7
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 2.5e-139 499.6 433 60.5
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 3.3e-139 499.2 429 62.5
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 1.5e-136 490.3 431 60.1
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 2.6e-136 489.6 432 59.7
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 5.8e-136 488.4 433 60.7
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 2.2e-135 486.5 433 59.8
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 2.9e-135 486.1 430 59.3
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 4.9e-135 485.3 432 59.0
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 4.9e-135 485.3 431 59.9
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 1.1e-134 484.2 433 60.0
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 5.4e-134 481.9 434 58.5
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 3.5e-133 479.2 432 57.6
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 5.0e-132 475.3 432 56.7
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 6.6e-132 474.9 430 58.4
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 9.5e-131 471.1 429 56.9
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 2.1e-130 469.9 431 58.2
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 8.0e-130 468.0 435 56.6
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.4e-129 467.2 435 56.6
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 3.1e-129 466.1 430 56.7
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 6.8e-129 464.9 432 56.7
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 3.4e-128 462.6 444 55.6
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 3.4e-128 462.6 435 56.1
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 7.5e-128 461.5 431 55.5
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 7.5e-128 461.5 435 55.9
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 9.8e-128 461.1 433 57.3
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 1.7e-127 460.3 434 55.8
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 1.4e-126 457.2 431 58.5
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.9e-126 456.8 435 55.4
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 4.1e-126 455.7 429 55.7
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 5.4e-126 455.3 435 55.9
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 9.2e-126 454.5 431 56.4
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 3.5e-125 452.6 431 57.5
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 6.0e-125 451.8 431 56.1
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 1.0e-124 451.1 436 55.5
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 6.6e-124 448.4 431 55.2
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 8.6e-124 448.0 437 56.5
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 5.6e-123 445.3 428 54.2
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 1.1e-121 441.0 428 53.5
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 1.4e-121 440.7 450 54.4
Hund11640 Selenicereus undatus HOM05D003115 ORTHO05D003595 1.8e-121 440.3 433 53.8
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 1.5e-120 437.2 431 55.9
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 2.6e-120 436.4 493 51.5
Sc25g0005820 Simmondsia chinensis HOM05D003115 ORTHO05D003595 5.8e-120 435.3 432 55.3
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 1.3e-119 434.1 440 53.9
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 2.3e-116 423.3 410 55.6
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 5.1e-116 422.2 432 54.6
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 1.1e-115 421.0 433 53.8
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 2.8e-114 416.4 433 52.9
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 5.2e-113 412.1 431 52.9
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 9.9e-112 407.9 434 52.5
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 2.9e-111 406.4 432 51.6
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 4.9e-111 405.6 471 48.6
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 4.2e-110 402.5 433 51.5
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 2.7e-109 399.8 432 51.2
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 4.6e-109 399.1 432 50.7
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 1.0e-108 397.9 434 51.8
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 1.7e-108 397.1 429 50.1
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 1.5e-107 394.0 439 50.3
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 1.1e-105 387.9 458 47.4
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 1.4e-105 387.5 431 49.0
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 1.1e-102 377.9 499 44.9
Actinidia35847 Actinidia chinensis HOM05D003115 ORTHO05D003595 4.2e-102 375.9 355 56.9
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 5.4e-102 375.6 432 47.7
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 1.7e-100 370.5 435 49.4
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 3.9e-100 369.4 433 48.0
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 3.3e-99 366.3 432 47.2
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 3.6e-98 362.8 433 47.3
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 1.1e-97 361.3 433 46.2
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 1.8e-97 360.5 437 47.1
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 3.1e-97 359.8 435 45.7
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 9.0e-97 358.2 433 46.7
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 1.5e-96 357.5 433 46.7
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 4.5e-96 355.9 434 46.8
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 2.4e-94 350.1 433 46.7
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 1.2e-93 347.8 433 44.6
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 1.6e-93 347.4 410 46.6
Lalb_Chr23g0269091 Lupinus albus HOM05D003115 ORTHO05D003595 2.7e-93 346.7 282 64.9
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 8.1e-90 335.1 433 44.8
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 9.0e-89 331.6 493 41.6
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 2.1e-85 320.5 467 41.3
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 3.5e-85 319.7 431 44.5
Cc00_g24210 Coffea canephora HOM05D003115 ORTHO05D003595 7.4e-83 312.0 368 48.4
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 2.0e-80 303.9 410 42.9
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 5.1e-76 289.3 444 39.0
Eucgr.H00030 Eucalyptus grandis HOM05D003115 ORTHO05D003595 2.1e-69 267.3 183 75.4
Gohir.D10G137700 Gossypium hirsutum HOM05D003115 ORTHO05D003595 1.4e-68 264.6 273 50.9
AL1G38530 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 1.8e-68 264.2 359 42.1
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 3.1e-65 253.4 320 44.7
Haze_07641 Corylus avellana HOM05D003115 ORTHO05D003595 1.3e-63 248.1 159 78.0
HPP92_007267 Vanilla planifolia HOM05D003115 ORTHO05D003595 6.5e-63 245.7 381 40.4
Nitab4.5_0000697g0090 Nicotiana tabacum HOM05D003115 ORTHO05D003595 3.2e-62 243.4 435 37.9
Lj6C385T7 Lonicera japonica HOM05D003115 ORTHO05D003595 1.1e-59 235.0 328 43.0
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 4.4e-59 233.0 184 66.8
Eucgr.H00031 Eucalyptus grandis HOM05D003115 ORTHO05D003595 2.6e-51 207.2 232 46.1
SEGI_12321 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 1.3e-50 204.9 204 55.9
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 1.7e-50 204.5 324 38.6
TPR.G14701 Trifolium pratense HOM05D003115 ORTHO05D003595 5.0e-47 193.0 132 74.2
Cre10.g461000 Chlamydomonas reinhardtii HOM05D003115 ORTHO05D003595 6.8e-44 182.6 264 39.4
Carub.0001s2398 Capsella rubella HOM05D003115 ORTHO05D003595 4.5e-40 169.9 271 36.9
C05p23980 Brassica napus HOM05D003115 ORTHO05D003595 3.6e-37 160.2 188 44.7
BolC5t31132H Brassica oleracea HOM05D003115 ORTHO05D003595 3.6e-37 160.2 188 44.7
HPP92_007258 Vanilla planifolia HOM05D003115 ORTHO05D003595 1.0e-36 158.7 130 62.3
MCO13G565 Micromonas commoda HOM05D003115 ORTHO05D003595 1.0e-31 142.1 234 35.9
A09p40410 Brassica napus HOM05D003115 ORTHO05D019968 8.6e-31 139.0 135 54.8
BraA09t39537Z Brassica rapa HOM05D003115 ORTHO05D019968 8.6e-31 139.0 135 54.8
BolC5t31125H Brassica oleracea HOM05D003115 ORTHO05D003595 1.9e-30 137.9 150 48.0
A09p40400 Brassica napus HOM05D003115 ORTHO05D003595 2.5e-30 137.5 245 37.1
Carub.0001s2400 Capsella rubella HOM05D003115 ORTHO05D003595 3.3e-30 137.1 124 57.3
RcHm_v2.0_Chr2g0136151 Rosa chinensis HOM05D003115 ORTHO05D003595 4.2e-30 136.7 198 40.4
BraA09t39536Z Brassica rapa HOM05D003115 ORTHO05D003595 9.5e-30 135.6 241 37.3
TPR.G860 Trifolium pratense HOM05D003115 ORTHO05D003595 4.0e-28 130.2 91 70.3
C05p24020 Brassica napus HOM05D003115 ORTHO05D003595 5.2e-28 129.8 150 46.0
Cpa.g.sc83.35 Carica papaya HOM05D003115 ORTHO05D003595 8.9e-28 129.0 105 65.7
BolC5t31124H Brassica oleracea HOM05D003115 ORTHO05D019968 1.2e-27 128.6 136 52.9
PRCOL_00001334 Prasinoderma coloniale HOM05D003115 ORTHO05D003595 4.4e-27 126.7 267 31.1
AL3G41550 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 3.7e-26 123.6 221 35.7
Hma1.2p1_0039F.1_g024560 Hydrangea macrophylla HOM05D003115 ORTHO05D003595 7.0e-25 119.4 126 50.8
TPR.G31177 Trifolium pratense HOM05D003115 ORTHO05D003595 2.0e-24 117.9 74 74.3
Cpa.g.sc83.36 Carica papaya HOM05D003115 ORTHO05D003595 2.9e-23 114.0 139 41.7
SHI16728 Sapria himalayana HOM05D003115 ORTHO05D003595 2.9e-23 114.0 112 52.7
SMO164G0231 Selaginella moellendorffii HOM05D003115 ORTHO05D003595 1.9e-22 111.3 274 31.8
TPR.G14704 Trifolium pratense HOM05D003115 ORTHO05D003595 2.1e-21 107.8 154 35.1
Oeu043445.1 Olea europaea HOM05D003115 ORTHO05D003595 4.0e-20 103.6 135 42.2
Lalb_Chr23g0269101 Lupinus albus HOM05D003115 ORTHO05D003595 4.4e-19 100.1 138 33.3
CDE07G0754 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 2.3e-12 77.8 231 30.7
Hma1.2p1_0039F.1_g024580 Hydrangea macrophylla HOM05D003115 ORTHO05D003595 2.0e-11 74.7 64 59.4
Hma1.2p1_0039F.1_g024570 Hydrangea macrophylla HOM05D003115 ORTHO05D003595 1.7e-10 71.6 50 72.0
Psat4g000280 Pisum sativum HOM05D003115 ORTHO05D003595 9.2e-09 65.9 67 47.8
Cc00_g09580 Coffea canephora HOM05D003115 ORTHO05D003595 2.7e-08 64.3 55 52.7
C05p24030 Brassica napus HOM05D003115 ORTHO05D019968 7.8e-08 62.8 173 28.3
AT5G36722 Arabidopsis thaliana HOM05D003115 ORTHO05D038785 3.9e-07 60.5 58 62.1
AT5G36810 Arabidopsis thaliana HOM05D003115 ORTHO05D038785 3.9e-07 60.5 58 62.1
Cfa010533 Carpinus fangiana HOM05D003115 ORTHO05D003595 1.1e-06 58.9 42 54.8
Haze_07640 Corylus avellana HOM05D003115 ORTHO05D003595 1.1e-06 58.9 40 60.0
BcaC05g26361 Brassica carinata HOM05D031756 ORTHO05D019968 9.5e-06 55.8 64 45.3
C05p24000 Brassica napus HOM05D031756 ORTHO05D019968 9.5e-06 55.8 64 45.3


User provided reference genes

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