Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1387 Cannabis sativa HOM05D000880 ORTHO05D009684 7.0e-150 535.0 442 100.0
MD08G1133900 Malus domestica HOM05D000880 ORTHO05D009684 3.4e-56 223.8 314 63.7
Prupe.1G462500 Prunus persica HOM05D000880 ORTHO05D009684 3.4e-56 223.8 317 64.0
Cfa013251 Carpinus fangiana HOM05D000880 ORTHO05D008158 5.7e-51 206.5 314 64.0
QL12p024656 Quercus lobata HOM05D000880 ORTHO05D009684 1.1e-46 192.2 314 61.1
Atru.chr7.2671 Acer truncatum HOM05D000880 ORTHO05D009684 2.5e-46 191.0 307 57.7
CiPaw.07G214800 Carya illinoinensis HOM05D000880 ORTHO05D009684 3.3e-43 180.6 320 59.4
FAN20G2124 Fragaria x ananassa HOM05D000880 ORTHO05D009684 5.7e-43 179.9 313 59.4
Cpa.g.sc10.206 Carica papaya HOM05D000880 ORTHO05D009684 9.7e-43 179.1 307 60.9
FAN24G3119 Fragaria x ananassa HOM05D000880 ORTHO05D009684 2.2e-42 177.9 314 59.2
RcHm_v2.0_Chr6g0312241 Rosa chinensis HOM05D000880 ORTHO05D009684 1.1e-41 175.6 316 59.5
Haze_21694 Corylus avellana HOM05D000880 ORTHO05D009684 1.6e-40 171.8 265 65.7
Lalb_Chr03g0032741 Lupinus albus HOM05D000880 ORTHO05D009684 2.5e-38 164.5 316 57.3
Ciclev10007859m.g Citrus clementina HOM05D000880 ORTHO05D009684 2.1e-37 161.4 299 60.9
Actinidia06447 Actinidia chinensis HOM05D000880 ORTHO05D009684 2.7e-37 161.0 319 55.5
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 1.8e-36 158.3 304 57.9
Lj6C69T3 Lonicera japonica HOM05D000880 ORTHO05D009684 1.8e-36 158.3 301 58.1
Dinv15656 Davidia involucrata HOM05D000880 ORTHO05D009684 3.4e-35 154.1 316 55.4
Manes.07G088100 Manihot esculenta HOM05D000880 ORTHO05D009684 3.4e-35 154.1 312 55.1
Sabra18G0001200 Salix brachista HOM05D000880 ORTHO05D009684 4.4e-35 153.7 305 58.7
Sabra18G0010100 Salix brachista HOM05D000880 ORTHO05D009684 4.4e-35 153.7 306 58.2
CSS0007644 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 4.8e-34 150.2 282 60.3
Potri.018G004400 Populus trichocarpa HOM05D000880 ORTHO05D009684 6.3e-34 149.8 308 56.8
Lj4A910T18 Lonicera japonica HOM05D000880 ORTHO05D009684 1.4e-33 148.7 308 56.2
MELO3C011202.2 Cucumis melo HOM05D000880 ORTHO05D009684 5.4e-33 146.7 311 56.6
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 2.7e-32 144.4 314 55.4
FvH4_2g30660 Fragaria vesca HOM05D000880 ORTHO05D009684 3.5e-32 144.1 270 60.0
FAN27G3148 Fragaria x ananassa HOM05D000880 ORTHO05D009684 4.5e-32 143.7 233 67.0
Sed0004667 Sechium edule HOM05D000880 ORTHO05D009684 1.0e-31 142.5 314 51.6
Glyma.13G197400 Glycine max HOM05D000880 ORTHO05D009684 1.3e-31 142.1 310 51.6
Thecc.09G004700 Theobroma cacao HOM05D000880 ORTHO05D009684 1.3e-31 142.1 178 47.2
TAR626G1204 Trochodendron aralioides HOM05D000880 ORTHO05D009684 1.3e-31 142.1 301 55.1
Rhsim04G0217100 Rhododendron simsii HOM05D000880 ORTHO05D009684 1.7e-31 141.7 313 54.3
PGR044G0315 Punica granatum HOM05D000880 ORTHO05D009684 3.8e-31 140.6 313 52.7
arahy.Tifrunner.gnm1.ann1.CHY0RW Arachis hypogaea HOM05D000880 ORTHO05D009684 6.5e-31 139.8 314 55.1
CsaV3_2G031530 Cucumis sativus L. HOM05D000880 ORTHO05D009684 1.1e-30 139.0 248 64.9
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.1e-30 139.0 296 55.1
Nitab4.5_0000502g0180 Nicotiana tabacum HOM05D000880 ORTHO05D009684 1.5e-30 138.7 294 56.8
Psat6g031840 Pisum sativum HOM05D000880 ORTHO05D009684 2.1e-29 134.8 308 53.9
Ca_12883_v3 Cicer arietinum L. HOM05D000880 ORTHO05D009684 3.6e-29 134.0 259 55.2
Phvul.011G207000 Phaseolus vulgaris HOM05D000880 ORTHO05D009684 1.0e-28 132.5 291 56.4
Aa31LG10G9610 Aethionema arabicum HOM05D000880 ORTHO05D009684 1.4e-28 132.1 333 47.4
Lj3g0007027 Lotus japonicus HOM05D000880 ORTHO05D009684 2.3e-28 131.3 320 43.8
Medtr1g010020 Medicago truncatula HOM05D000880 ORTHO05D009684 5.2e-28 130.2 287 57.1
TPR.G12115 Trifolium pratense HOM05D000880 ORTHO05D009684 6.8e-28 129.8 453 55.0
Haze_10332 Corylus avellana HOM05D000880 ORTHO05D009684 8.8e-28 129.4 202 73.3
vmacro08195 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 1.2e-27 129.0 321 53.9
VMungo1127G1257 Vigna mungo HOM05D000880 ORTHO05D009684 1.5e-27 128.6 302 56.3
Cc08_g06370 Coffea canephora HOM05D000880 ORTHO05D009684 2.8e-26 124.4 299 55.5
GSVIVG01003996001 Vitis vinifera HOM05D000880 ORTHO05D009684 8.3e-26 122.9 204 72.1
Hund04480 Selenicereus undatus HOM05D000880 ORTHO05D009684 3.1e-25 120.9 233 63.1
Solyc03g120070.4 Solanum lycopersicum HOM05D000880 ORTHO05D009684 9.2e-25 119.4 294 56.1
Aqoxy5G01876 Aquilegia oxysepala HOM05D000880 ORTHO05D009684 1.0e-23 115.9 298 53.7
Migut.E01433 Erythranthe guttata HOM05D000880 ORTHO05D009684 2.3e-23 114.8 297 57.9
CARHR188620 Cardamine hirsuta HOM05D000880 ORTHO05D009684 8.6e-23 112.8 298 53.0
A06p35600 Brassica napus HOM05D000880 ORTHO05D009684 1.9e-22 111.7 302 52.0
Sp2g22620 Schrenkiella parvula HOM05D000880 ORTHO05D009684 1.9e-22 111.7 303 53.1
Aa31LG10G9680 Aethionema arabicum HOM05D000880 ORTHO05D009684 4.3e-22 110.5 328 49.1
Nn8g39798 Nelumbo nucifera HOM05D000880 ORTHO05D009684 5.6e-22 110.2 301 52.8
C07p42940 Brassica napus HOM05D000880 ORTHO05D009684 9.5e-22 109.4 302 51.7
MD15G1110300 Malus domestica HOM05D000880 ORTHO05D009684 1.2e-21 109.0 192 69.3
PGSC0003DMG400005692 Solanum tuberosum HOM05D000880 ORTHO05D009684 1.6e-21 108.6 294 55.1
SGA_v2.0_scaffold121G33022 Striga asiatica HOM05D000880 ORTHO05D009684 2.1e-21 108.2 295 43.7
Sopen03g038940 Solanum pennellii HOM05D000880 ORTHO05D009684 3.6e-21 107.5 294 54.8
BraA06t26485Z Brassica rapa HOM05D000880 ORTHO05D009684 4.7e-21 107.1 302 51.7
Thhalv10003880m.g Eutrema salsugineum HOM05D000880 ORTHO05D009684 4.7e-21 107.1 295 54.2
Lsat_1_v5_gn_5_33201 Lactuca sativa HOM05D000880 ORTHO05D009684 1.0e-20 105.9 160 38.1
Peaxi162Scf00288g01016 Petunia axillaris HOM05D000880 ORTHO05D009684 1.0e-20 105.9 295 53.6
MSTRG.13951 Avicennia marina HOM05D000880 ORTHO05D009684 3.0e-20 104.4 206 68.9
Glyma.15G236000 Glycine max HOM05D000880 ORTHO05D009684 3.0e-20 104.4 205 59.0
Nitab4.5_0001956g0020 Nicotiana tabacum HOM05D000880 ORTHO05D009684 6.8e-20 103.2 288 54.2
BolC7t44823H Brassica oleracea HOM05D000880 ORTHO05D009684 1.2e-19 102.4 300 51.7
vmacro08192 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 2.6e-19 101.3 308 46.8
AL6G36470 Arabidopsis lyrata HOM05D000880 ORTHO05D009684 9.8e-19 99.4 296 52.0
Eucgr.H00073 Eucalyptus grandis HOM05D000880 ORTHO05D009684 2.9e-18 97.8 313 47.9
AT5G24830 Arabidopsis thaliana HOM05D000880 ORTHO05D009684 4.9e-18 97.1 294 51.4
Carub.0006s2268 Capsella rubella HOM05D000880 ORTHO05D009684 8.3e-18 96.3 302 51.3
Ah.02g121750 Amaranthus hybridus HOM05D000880 ORTHO05D009684 1.1e-17 95.9 227 58.1
Sc07g0001710 Simmondsia chinensis HOM05D000880 ORTHO05D009684 1.4e-17 95.5 117 43.6
AUR62017906 Chenopodium quinoa HOM05D000880 ORTHO05D009684 1.8e-17 95.1 255 47.8
AUR62003593 Chenopodium quinoa HOM05D000880 ORTHO05D009684 2.4e-17 94.7 243 50.2
MBI13_g01685_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D001950 1.2e-16 92.4 135 34.8
HanXRQChr07g0202221 Helianthus annuus HOM05D000880 ORTHO05D009684 1.3e-15 89.0 159 37.7
Oeu040613.1 Olea europaea HOM05D000880 ORTHO05D009684 1.7e-15 88.6 173 37.0
EL10Ac6g15284 Beta vulgaris HOM05D000880 ORTHO05D009684 1.1e-14 85.9 253 54.9
ECA232G0576 Erigeron canadensis HOM05D000880 ORTHO05D009684 1.5e-14 85.5 126 39.7
ECA236G3570 Erigeron canadensis HOM05D000705 ORTHO05D002970 1.1e-12 79.3 95 45.3
CiPaw.15G081300 Carya illinoinensis HOM05D000880 ORTHO05D009684 2.2e-10 71.6 77 46.8
BcaNung01260 Brassica carinata HOM05D000880 ORTHO05D009684 2.9e-10 71.2 164 29.3
HPP92_017364 Vanilla planifolia HOM05D003382 ORTHO05D003930 6.4e-10 70.1 131 31.3
PSO017G1147 Papaver somniferum HOM05D000880 ORTHO05D001950 9.2e-09 66.2 172 29.1
CSS0003109 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 1.6e-08 65.5 98 37.8
Cpa.g.sc10.208 Carica papaya HOM05D000880 ORTHO05D009684 6.0e-08 63.5 183 67.8
DCAR_017077 Daucus carota HOM05D000880 ORTHO05D009684 1.0e-07 62.8 58 51.7


User provided reference genes

Program Settings