Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 1.8e-184 649.0 316 100.0
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 2.2e-137 492.7 298 80.2
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 7.7e-135 484.2 284 81.7
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 1.7e-134 483.0 298 77.5
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 1.7e-134 483.0 300 77.7
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 7.2e-133 477.6 299 77.6
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 6.1e-132 474.6 281 80.8
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 1.8e-131 473.0 299 76.3
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 2.3e-131 472.6 299 76.3
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 7.5e-130 467.6 299 75.6
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 1.3e-129 466.8 281 78.6
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 8.3e-129 464.2 285 76.5
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 1.4e-128 463.4 285 76.8
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 3.1e-128 462.2 285 77.5
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 4.1e-128 461.8 288 77.4
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 7.0e-128 461.1 281 77.6
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 4.5e-127 458.4 292 74.7
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 7.7e-127 457.6 281 77.6
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 3.3e-125 452.2 284 75.4
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 4.7e-124 448.4 286 75.2
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 4.7e-124 448.4 299 71.6
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 8.0e-124 447.6 315 69.5
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 2.3e-123 446.0 294 73.1
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 1.5e-122 443.4 306 69.9
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 2.0e-122 443.0 281 75.1
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 5.7e-122 441.4 337 67.1
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 5.7e-122 441.4 281 74.0
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 7.5e-122 441.0 282 75.9
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 9.8e-122 440.7 282 73.8
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 1.7e-121 439.9 307 68.4
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 4.9e-121 438.3 281 72.6
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 1.4e-120 436.8 281 72.6
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 9.2e-120 434.1 285 73.3
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 1.6e-119 433.3 284 71.8
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 4.5e-119 431.8 298 70.8
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 5.9e-119 431.4 283 72.8
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 1.7e-118 429.9 298 69.8
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 2.3e-118 429.5 283 71.4
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 2.9e-118 429.1 284 72.9
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 6.6e-118 427.9 312 66.0
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 1.5e-117 426.8 285 72.6
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 2.5e-117 426.0 279 71.0
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 3.3e-117 425.6 287 71.1
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 3.3e-117 425.6 287 71.1
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 4.3e-117 425.2 286 72.7
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 7.3e-117 424.5 284 72.9
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 1.6e-116 423.3 279 72.8
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 2.1e-116 422.9 279 71.7
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 3.6e-116 422.2 285 71.9
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 6.1e-116 421.4 316 65.5
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 6.1e-116 421.4 279 71.7
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 6.1e-116 421.4 276 71.0
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 8.0e-116 421.0 282 72.0
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 1.0e-115 420.6 283 72.1
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 1.4e-115 420.2 281 72.2
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 1.8e-115 419.9 284 72.9
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 1.8e-115 419.9 285 72.6
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 1.8e-115 419.9 285 72.6
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 1.8e-115 419.9 287 70.0
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 1.8e-115 419.9 283 72.4
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 2.3e-115 419.5 284 72.2
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 1.2e-114 417.2 284 71.8
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 2.0e-114 416.4 284 71.1
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 4.4e-114 415.2 285 71.9
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 4.4e-114 415.2 285 71.9
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 7.5e-114 414.5 284 71.8
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 7.5e-114 414.5 284 71.8
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 7.5e-114 414.5 284 71.8
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 3.7e-113 412.1 271 68.3
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 1.1e-112 410.6 280 71.4
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 1.4e-112 410.2 284 71.1
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 5.4e-112 408.3 279 70.3
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 7.8e-111 404.4 292 65.1
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 2.3e-110 402.9 350 58.0
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 2.5e-109 399.4 286 66.1
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 2.5e-109 399.4 286 66.1
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 5.6e-109 398.3 263 71.5
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 5.6e-109 398.3 299 68.2
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 7.3e-109 397.9 239 78.7
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 1.2e-108 397.1 281 69.0
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 6.2e-108 394.8 299 67.6
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.4e-107 393.7 391 52.4
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 2.3e-107 392.9 339 58.1
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 3.4e-106 389.0 282 69.1
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 1.7e-105 386.7 237 75.9
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 6.4e-105 384.8 240 76.7
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 1.9e-104 383.3 281 64.8
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.9e-104 383.3 384 52.3
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 5.4e-104 381.7 357 55.2
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 7.8e-103 377.9 271 66.1
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 1.6e-100 370.2 301 62.8
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 3.6e-100 369.0 286 61.2
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 5.2e-99 365.2 278 61.5
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 1.7e-97 360.1 312 56.1
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 1.4e-96 357.1 326 55.2
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 1.6e-92 343.6 303 57.4
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 4.7e-92 342.0 241 68.5
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 6.0e-87 325.1 265 58.5
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 4.0e-83 312.4 186 78.0
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 1.5e-82 310.5 228 67.5
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 3.4e-82 309.3 323 52.0
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 1.2e-79 300.8 223 64.6
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 3.5e-79 299.3 277 54.2
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.9e-77 293.5 232 62.5
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 7.3e-77 291.6 206 68.4
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 3.1e-75 286.2 308 48.7
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 6.4e-73 278.5 192 69.3
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 1.8e-70 270.4 271 50.9
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 8.4e-65 251.5 232 51.3
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 1.6e-63 247.3 144 78.5
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 1.1e-59 234.6 259 45.9
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 5.3e-59 232.3 260 46.2
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 9.3e-56 221.5 209 55.0
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 2.8e-52 209.9 198 54.5
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 3.8e-41 172.9 115 70.4
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 3.8e-41 172.9 115 70.4
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 2.2e-36 157.1 98 75.5
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 5.0e-33 146.0 118 64.4
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.2e-31 141.4 98 72.4
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 2.7e-31 140.2 89 73.0
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 4.5e-26 122.9 89 66.3
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 3.8e-25 119.8 107 56.1
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 5.0e-25 119.4 99 59.6
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 6.5e-25 119.0 97 60.8
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 9.4e-24 115.2 61 83.6
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 3.6e-23 113.2 95 61.1
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 3.6e-23 113.2 99 58.6
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 4.0e-22 109.8 116 49.1
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 7.5e-21 105.5 51 92.2
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 7.5e-21 105.5 79 67.1
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 9.8e-21 105.1 62 77.4
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.1e-19 101.7 55 74.5
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 2.4e-19 100.5 65 67.7
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 4.1e-19 99.8 103 49.5
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 7.5e-13 79.0 57 63.2
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 9.8e-13 78.6 38 84.2
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 6.3e-12 75.9 46 71.7
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 1.1e-11 75.1 36 77.8
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 4.1e-11 73.2 53 62.3
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 8.6e-09 65.5 66 57.6
Haze_05939 Corylus avellana HOM05D005284 ORTHO05D006609 4.2e-08 63.2 42 73.8
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 1.6e-07 61.2 30 80.0
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 1.6e-07 61.2 30 80.0


User provided reference genes

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