Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1344 Cannabis sativa HOM05D006138 ORTHO05D007778 9.3e-229 796.6 420 100.0
CANSAT78G2425 Cannabis sativa HOM05D006138 ORTHO05D007778 5.7e-226 787.3 420 99.3
Cfa014952 Carpinus fangiana HOM05D006138 ORTHO05D007778 6.0e-119 431.8 415 58.3
MD04G1014100 Malus domestica HOM05D006138 ORTHO05D007778 5.1e-118 428.7 406 57.6
Thecc.04G198400 Theobroma cacao HOM05D006138 ORTHO05D007778 8.2e-116 421.4 424 53.8
Dinv27208 Davidia involucrata HOM05D006138 ORTHO05D007778 2.4e-115 419.9 422 55.0
CiPaw.02G065100 Carya illinoinensis HOM05D006138 ORTHO05D007778 6.9e-115 418.3 411 57.4
Cpa.g.sc83.29 Carica papaya HOM05D006138 ORTHO05D007778 5.5e-112 408.7 419 52.5
Gohir.A05G323100 Gossypium hirsutum HOM05D006138 ORTHO05D007778 8.8e-110 401.4 422 52.6
Potri.001G317900 Populus trichocarpa HOM05D006138 ORTHO05D007778 1.3e-108 397.5 430 52.1
Gorai.009G350500 Gossypium raimondii HOM05D006138 ORTHO05D007778 8.2e-108 394.8 422 51.7
TWI53G0419 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 3.1e-107 392.9 417 52.8
TWI09G0334 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 6.9e-107 391.7 412 52.2
Gohir.D05G326000 Gossypium hirsutum HOM05D006138 ORTHO05D007778 1.3e-105 387.5 422 51.2
TAR362G0162 Trochodendron aralioides HOM05D006138 ORTHO05D007778 2.3e-102 376.7 417 49.6
CsaV3_3G010820 Cucumis sativus L. HOM05D006138 ORTHO05D007778 3.0e-102 376.3 418 51.9
Actinidia38756 Actinidia chinensis HOM05D006138 ORTHO05D007778 5.7e-101 372.1 426 50.5
Sed0019269 Sechium edule HOM05D006138 ORTHO05D007778 1.7e-100 370.5 408 51.0
COL.COLO4_20197 Corchorus olitorius HOM05D006138 ORTHO05D007778 3.7e-100 369.4 415 52.0
Atru.chr4.1604 Acer truncatum HOM05D006138 ORTHO05D007778 4.8e-100 369.0 394 52.0
Manes.15G055900 Manihot esculenta HOM05D006138 ORTHO05D007778 4.8e-100 369.0 356 55.6
Oeu025031.1 Olea europaea HOM05D006138 ORTHO05D007778 1.1e-99 367.9 415 48.7
GSVIVG01020999001 Vitis vinifera HOM05D006138 ORTHO05D007778 2.6e-98 363.2 419 48.9
Nn1g07955 Nelumbo nucifera HOM05D006138 ORTHO05D007778 5.9e-98 362.1 425 47.8
AL3G38900 Arabidopsis lyrata HOM05D006138 ORTHO05D007778 2.2e-97 360.1 412 50.2
Carub.0003s2421 Capsella rubella HOM05D006138 ORTHO05D007778 6.5e-97 358.6 408 49.5
Lj6A392G25 Lonicera japonica HOM05D006138 ORTHO05D007778 8.5e-97 358.2 455 47.7
Sp3g21610 Schrenkiella parvula HOM05D006138 ORTHO05D007778 1.1e-96 357.8 413 49.6
vmacro15557 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 1.4e-94 350.9 415 49.6
THA.LOC104804805 Tarenaya hassleriana HOM05D006138 ORTHO05D007778 5.2e-94 349.0 420 47.6
Lj6A407G21 Lonicera japonica HOM05D006138 ORTHO05D007778 1.1e-93 347.8 454 47.1
AT3G23910 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 1.5e-93 347.4 411 48.9
Sc13g0000300 Simmondsia chinensis HOM05D006138 ORTHO05D007778 6.3e-92 342.0 414 46.6
Aa31LG8G10490 Aethionema arabicum HOM05D006138 ORTHO05D007778 1.8e-91 340.5 424 47.2
Sabra16G0201200 Salix brachista HOM05D006138 ORTHO05D007778 5.3e-91 339.0 535 41.7
Cc03_g08330 Coffea canephora HOM05D006138 ORTHO05D007778 9.1e-91 338.2 431 43.4
QL10p052654 Quercus lobata HOM05D006138 ORTHO05D007778 2.6e-90 336.7 555 41.6
A07p08490 Brassica napus HOM05D006138 ORTHO05D007778 3.5e-90 336.3 405 48.1
Lj6g0009885 Lotus japonicus HOM05D006138 ORTHO05D007778 3.5e-90 336.3 409 47.4
ClCG05G003180 Citrullus lanatus HOM05D006138 ORTHO05D007778 4.5e-90 335.9 414 48.6
BcaC06g35587 Brassica carinata HOM05D006138 ORTHO05D007778 4.2e-88 329.3 406 46.8
Rhsim02G0060900 Rhododendron simsii HOM05D006138 ORTHO05D007778 5.5e-88 328.9 567 37.9
C07p13230 Brassica napus HOM05D006138 ORTHO05D007778 7.2e-88 328.6 406 46.8
Nitab4.5_0000401g0220 Nicotiana tabacum HOM05D006138 ORTHO05D007778 9.4e-88 328.2 411 45.0
Glyma.11G255500 Glycine max HOM05D006138 ORTHO05D007778 2.1e-87 327.0 400 46.2
AT3G24255 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 2.7e-87 326.6 419 47.5
Ca_16395_v3 Cicer arietinum L. HOM05D006138 ORTHO05D007778 2.7e-87 326.6 392 48.2
MSTRG.9735 Avicennia marina HOM05D006138 ORTHO05D007778 4.7e-87 325.9 414 47.1
RhsimUnG0035600 Rhododendron simsii HOM05D006138 ORTHO05D007778 4.7e-87 325.9 550 38.7
Peaxi162Scf00047g00230 Petunia axillaris HOM05D006138 ORTHO05D007778 6.1e-87 325.5 399 46.1
DCAR_026640 Daucus carota HOM05D006138 ORTHO05D007778 8.0e-87 325.1 394 47.2
BraA07t28634Z Brassica rapa HOM05D006138 ORTHO05D007778 3.0e-86 323.2 412 46.8
BolC7t41815H Brassica oleracea HOM05D006138 ORTHO05D007778 6.7e-86 322.0 416 45.9
Thhalv10002763m.g Eutrema salsugineum HOM05D006138 ORTHO05D007778 6.7e-86 322.0 350 52.3
BcaB06g26554 Brassica carinata HOM05D006138 ORTHO05D007778 1.7e-84 317.4 407 46.9
arahy.Tifrunner.gnm1.ann1.3M33GA Arachis hypogaea HOM05D006138 ORTHO05D007778 6.3e-84 315.5 405 44.7
VMungo1383G1063 Vigna mungo HOM05D000127 ORTHO05D000243 1.8e-83 313.9 396 46.2
arahy.Tifrunner.gnm1.ann1.HYZ2KB Arachis hypogaea HOM05D006138 ORTHO05D007778 5.3e-83 312.4 406 44.6
Psat5g102360 Pisum sativum HOM05D006138 ORTHO05D007778 3.5e-82 309.7 395 45.8
CAN.G1565.12 Capsicum annuum HOM05D006138 ORTHO05D007778 2.9e-81 306.6 355 47.3
PGR004G2157 Punica granatum HOM05D006138 ORTHO05D007778 2.9e-81 306.6 411 44.0
Migut.G00745 Erythranthe guttata HOM05D006138 ORTHO05D007778 5.0e-81 305.8 414 43.5
Solyc09g092180.3 Solanum lycopersicum HOM05D006138 ORTHO05D007778 5.0e-81 305.8 404 43.8
SalBow8G0822 Salvia bowleyana HOM05D006138 ORTHO05D007778 6.5e-81 305.4 445 42.7
SalBow8G2056 Salvia bowleyana HOM05D006138 ORTHO05D007778 8.5e-81 305.1 445 42.7
PSO017G1394 Papaver somniferum HOM05D006138 ORTHO05D007778 1.5e-80 304.3 416 41.8
Phvul.001G267400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 1.9e-80 303.9 391 45.3
Eucgr.H00039 Eucalyptus grandis HOM05D006138 ORTHO05D007778 9.4e-80 301.6 376 46.3
Sopen09g035050 Solanum pennellii HOM05D006138 ORTHO05D007778 9.4e-80 301.6 404 43.6
Lalb_Chr23g0278421 Lupinus albus HOM05D006138 ORTHO05D007778 3.6e-79 299.7 352 46.9
Nitab4.5_0003101g0010 Nicotiana tabacum HOM05D006138 ORTHO05D007778 4.7e-79 299.3 408 43.1
Lsat_1_v5_gn_6_60661 Lactuca sativa HOM05D006138 ORTHO05D007778 1.0e-78 298.1 418 42.3
PGSC0003DMG400026422 Solanum tuberosum HOM05D006138 ORTHO05D007778 5.2e-78 295.8 362 46.1
SGA_v2.0_scaffold19G08768 Striga asiatica HOM05D006138 ORTHO05D007778 8.8e-78 295.0 419 43.0
vmacro15559 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 1.5e-77 294.3 429 42.9
HanXRQChr07g0185891 Helianthus annuus HOM05D006138 ORTHO05D007778 4.4e-77 292.7 405 42.2
Eucgr.L02926 Eucalyptus grandis HOM05D006138 ORTHO05D007778 1.3e-73 281.2 376 44.7
AUR62020846 Chenopodium quinoa HOM05D006138 ORTHO05D007778 3.3e-72 276.6 382 42.4
CSS0015025 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 1.4e-70 271.2 258 55.8
CSS0014339 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 3.0e-70 270.0 258 55.0
RcHm_v2.0_Chr4g0414021 Rosa chinensis HOM05D006138 ORTHO05D007778 1.7e-68 264.2 288 52.1
PSO063G4547 Papaver somniferum HOM05D006138 ORTHO05D007778 4.1e-67 259.6 379 39.6
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 2.7e-66 256.9 386 40.2
Aqoxy2G04005 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 1.9e-64 250.8 390 41.3
CDE05G2116 Ceratophyllum demersum HOM05D006138 ORTHO05D007778 9.5e-64 248.4 358 42.7
FAN22G1553 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.4e-62 244.6 297 48.1
Aqoxy360s001 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 2.3e-62 243.8 351 43.6
FAN12G1205 Fragaria x ananassa HOM05D006138 ORTHO05D007778 2.3e-62 243.8 297 48.1
FvH4_4g13460 Fragaria vesca HOM05D006138 ORTHO05D007778 6.8e-62 242.3 305 47.5
Haze_11642 Corylus avellana HOM05D006138 ORTHO05D007778 1.4e-59 234.6 372 43.3
Ah.04g149320 Amaranthus hybridus HOM05D006138 ORTHO05D007778 4.1e-59 233.0 398 36.9
Gohir.A12G078622 Gossypium hirsutum HOM05D006138 ORTHO05D007778 2.7e-58 230.3 280 46.8
AUR62018570 Chenopodium quinoa HOM05D006138 ORTHO05D007778 4.6e-58 229.6 365 39.5
Glyma.18G001700 Glycine max HOM05D006138 ORTHO05D007778 1.3e-57 228.0 231 53.2
HPP92_023190 Vanilla planifolia HOM05D006138 ORTHO05D007778 8.0e-55 218.8 412 36.2
Prupe.1G161100 Prunus persica HOM05D006138 ORTHO05D007778 4.0e-54 216.5 279 45.5
EL10Ac3g07466 Beta vulgaris HOM05D006138 ORTHO05D007778 4.4e-53 213.0 382 35.3
TPR.G24162 Trifolium pratense HOM05D006138 ORTHO05D007778 3.7e-52 209.9 247 47.8
Ciclev10005758m.g Citrus clementina HOM05D006138 ORTHO05D007778 1.3e-49 201.4 169 60.9
Os04g0379800 Oryza sativa ssp. japonica HOM05D006138 ORTHO05D007778 8.9e-46 188.7 401 34.2
Hma1.2p1_0017F.1_g011170 Hydrangea macrophylla HOM05D006138 ORTHO05D007778 2.6e-45 187.2 267 43.8
Gohir.D12G210200 Gossypium hirsutum HOM05D006138 ORTHO05D007778 3.7e-44 183.3 240 45.8
unitig_37.g12032 Utricularia gibba HOM05D006138 ORTHO05D007778 3.2e-43 180.3 363 34.4
MELO3C006299.2 Cucumis melo HOM05D006138 ORTHO05D007778 4.6e-42 176.4 270 43.7
Oeu025032.1 Olea europaea HOM05D006138 ORTHO05D007778 1.5e-37 161.4 164 53.7
Duzib268G1255 Durio zibethinus HOM05D006138 ORTHO05D007778 4.9e-36 156.4 128 60.9
FAN07G2199 Fragaria x ananassa HOM05D006138 ORTHO05D007778 2.7e-34 150.6 288 39.2
Hund24401 Selenicereus undatus HOM05D006138 ORTHO05D007778 1.5e-29 134.8 253 36.8
RcHm_v2.0_Chr4g0414071 Rosa chinensis HOM05D006138 ORTHO05D007778 2.2e-28 131.0 125 58.4
Zm00001eb085830 Zea mays HOM05D006138 ORTHO05D007778 4.3e-24 116.7 410 26.1
Nitab4.5_0001652g0120 Nicotiana tabacum HOM05D006138 ORTHO05D007778 4.5e-21 106.7 252 33.3
Nn1g00061 Nelumbo nucifera HOM05D006138 ORTHO05D007778 1.3e-20 105.1 131 45.8
FAN17G0457 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.6e-18 98.2 158 38.6
Phvul.001G135400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 1.5e-16 91.7 95 49.5
Actinidia16488 Actinidia chinensis HOM05D006138 ORTHO05D007778 3.3e-16 90.5 80 58.8
Duzib268G0147 Durio zibethinus HOM05D006138 ORTHO05D007778 5.6e-16 89.7 107 45.8
Duzib268G0476 Durio zibethinus HOM05D006138 ORTHO05D007778 5.6e-16 89.7 107 45.8
Hund29337 Selenicereus undatus HOM05D006138 ORTHO05D007778 1.1e-14 85.5 112 42.0
Hund29338 Selenicereus undatus HOM05D006138 ORTHO05D007778 1.1e-14 85.5 112 42.0
Mapoly0008s0044 Marchantia polymorpha HOM05D006138 ORTHO05D007778 3.1e-14 84.0 408 24.0
Pp3c4_4010 Physcomitrium patens HOM05D058747 ORTHO05D007778 1.2e-10 72.0 253 24.5
RcHm_v2.0_Chr4g0419401 Rosa chinensis HOM05D006138 ORTHO05D007778 9.0e-06 55.8 96 38.5


User provided reference genes

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