Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 2559.3 1316 100.0
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1525.0 1327 61.5
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1516.9 1321 61.6
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1510.0 1335 60.7
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1486.5 1319 60.3
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 1480.3 1319 60.1
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1469.5 1319 60.0
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1463.7 1355 57.5
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 1418.7 1287 59.7
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1412.5 1406 55.5
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1394.0 1314 57.8
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1380.9 1189 61.7
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1372.5 1282 58.0
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1350.5 1296 56.8
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 1350.5 1308 55.7
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1329.7 1322 55.1
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1328.5 1291 55.6
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 0.0e+00 1322.4 1281 55.0
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 0.0e+00 1311.2 1291 54.6
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 0.0e+00 1308.5 1285 55.0
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1305.8 1322 54.0
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 0.0e+00 1304.7 1278 55.3
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 0.0e+00 1303.5 1322 54.4
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 0.0e+00 1295.8 1285 53.9
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1289.2 1292 54.9
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 0.0e+00 1288.1 1286 54.5
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 0.0e+00 1265.4 1291 53.6
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1259.6 1284 52.7
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1250.0 1286 52.8
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 0.0e+00 1247.6 1275 53.5
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 0.0e+00 1239.6 1299 52.9
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1231.1 1285 52.5
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 0.0e+00 1222.6 1286 51.9
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 0.0e+00 1221.1 1285 52.9
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 0.0e+00 1221.1 1281 52.1
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 0.0e+00 1218.0 1281 53.2
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1216.8 1277 52.2
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 0.0e+00 1215.7 1274 52.4
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 0.0e+00 1209.5 1302 50.0
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 0.0e+00 1208.0 1278 52.2
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 0.0e+00 1207.2 1310 49.8
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 0.0e+00 1199.1 1333 51.8
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 0.0e+00 1190.6 1153 56.5
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1190.3 1303 50.9
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 0.0e+00 1189.9 1134 56.7
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 0.0e+00 1188.7 1283 49.9
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 0.0e+00 1182.9 1314 49.1
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1182.2 1295 49.5
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 0.0e+00 1176.4 1308 50.1
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 0.0e+00 1170.2 1321 50.9
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 0.0e+00 1167.5 1337 50.0
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1163.3 1292 51.0
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 0.0e+00 1162.1 1058 58.5
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 0.0e+00 1157.1 1319 48.5
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 0.0e+00 1155.6 1296 48.1
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 0.0e+00 1148.3 1287 49.3
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 0.0e+00 1144.8 1315 48.7
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 0.0e+00 1139.8 1335 47.9
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 0.0e+00 1134.4 1281 49.6
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 0.0e+00 1132.9 1156 53.1
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1124.8 1326 47.4
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1122.5 1314 47.8
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1121.7 1321 47.4
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1114.8 1320 47.3
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 0.0e+00 1114.8 1320 47.3
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 0.0e+00 1114.8 1341 46.5
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1109.0 1175 51.6
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 0.0e+00 1108.6 1039 56.7
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 0.0e+00 1106.7 1163 53.0
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 0.0e+00 1097.0 1281 48.1
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 0.0e+00 1096.6 1310 48.0
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 0.0e+00 1085.5 1129 52.5
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 0.0e+00 1083.9 1304 47.2
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 0.0e+00 1080.5 1304 47.3
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 1.4e-310 1070.1 906 61.5
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 1.1e-307 1060.4 1321 46.0
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 3.3e-304 1048.9 1151 51.0
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 1.1e-299 1033.9 1262 46.1
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 1.9e-299 1033.1 1273 46.7
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 7.6e-293 1011.1 1229 46.5
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 6.2e-287 991.5 1306 45.9
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 1.6e-282 976.9 1273 45.5
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 1.1e-278 964.1 1204 45.9
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 4.5e-269 932.2 1012 51.0
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 3.4e-261 906.0 1202 44.8
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 2.5e-256 889.8 864 56.7
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 2.4e-254 883.2 1114 44.7
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 9.1e-238 828.2 1056 46.1
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 5.0e-236 822.4 1158 43.1
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 7.7e-229 798.5 754 57.4
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 3.7e-223 779.6 841 49.0
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 3.3e-211 740.0 1008 42.2
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 1.4e-209 734.6 1290 37.1
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 8.9e-201 705.3 809 49.2
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 1.3e-196 691.4 1035 41.1
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 1.6e-189 667.9 759 50.7
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 1.6e-186 657.9 702 52.4
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 3.4e-168 597.0 465 66.2
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 9.3e-166 589.0 591 53.1
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 7.6e-160 569.3 642 48.6
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 2.3e-156 557.8 505 60.4
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 2.4e-145 521.2 710 45.8
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 6.1e-133 479.9 633 43.1
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 3.0e-132 477.6 482 54.8
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 4.2e-126 457.2 403 60.0
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.0e-103 382.9 479 45.9
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 5.0e-103 380.6 1316 26.4
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 3.7e-98 364.4 600 41.2
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 8.6e-95 353.2 1251 26.6
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 6.8e-76 290.4 359 44.3
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 1.3e-74 286.2 395 44.3
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 5.4e-65 254.2 379 39.8
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 9.6e-62 243.4 384 41.7
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 2.1e-45 189.1 289 40.5
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 6.4e-42 177.6 173 53.2
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 1.1e-41 176.8 324 37.7
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 4.3e-38 164.9 191 45.0
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 1.3e-37 163.3 147 60.5
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 1.0e-34 153.7 165 52.7
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 4.2e-33 148.3 163 55.2
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 5.9e-27 127.9 110 61.8
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 2.9e-26 125.6 138 50.0
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 1.0e-23 117.1 116 56.0
CBR_g39378 Chara braunii HOM05D005651 ORTHO05D006877 7.4e-22 110.9 482 24.3
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 8.2e-21 107.5 213 31.5
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 4.1e-20 105.1 130 46.9
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 1.2e-16 93.6 117 44.4
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 5.1e-15 88.2 82 54.9
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 5.3e-12 78.2 69 55.1
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 1.3e-10 73.6 65 58.5
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 2.9e-10 72.4 57 63.2


User provided reference genes

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