Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 1.1e-251 872.8 468 100.0
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 5.5e-214 747.7 468 86.8
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 5.1e-151 538.5 481 61.3
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 5.1e-151 538.5 470 61.9
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 2.5e-150 536.2 470 61.3
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 1.3e-149 533.9 481 60.5
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 3.7e-149 532.3 481 60.7
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 6.9e-148 528.1 481 60.3
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 3.4e-147 525.8 468 59.6
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 1.3e-146 523.9 468 61.8
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 8.4e-146 521.2 478 60.7
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 2.1e-144 516.5 470 61.5
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 5.7e-142 508.4 482 60.2
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 8.2e-141 504.6 480 58.1
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 4.1e-140 502.3 279 92.1
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 4.1e-140 502.3 472 58.7
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 7.7e-139 498.0 473 59.0
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 1.7e-138 496.9 477 60.0
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 1.7e-138 496.9 478 58.6
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 3.8e-138 495.7 480 58.8
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 3.2e-137 492.7 473 57.7
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 5.5e-137 491.9 478 56.3
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 6.1e-136 488.4 478 56.3
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.0e-135 486.1 479 56.4
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.9e-135 485.7 479 56.6
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 5.1e-135 485.3 468 58.5
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.1e-134 484.2 479 56.2
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.5e-134 483.8 473 57.1
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 1.5e-134 483.8 476 56.7
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 2.0e-134 483.4 466 57.7
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 4.3e-134 482.3 478 58.4
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 9.7e-134 481.1 483 56.5
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 1.3e-133 480.7 479 55.3
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.3e-133 480.7 466 57.5
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 4.8e-133 478.8 473 57.1
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.4e-132 477.2 472 54.9
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 3.1e-132 476.1 466 57.3
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.5e-131 473.8 469 57.8
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.4e-131 472.6 472 54.4
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 5.9e-131 471.9 470 56.4
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 2.9e-130 469.5 478 55.9
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 1.1e-129 467.6 473 56.2
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 2.5e-129 466.5 480 57.9
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.2e-129 466.1 472 53.6
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 6.1e-128 461.8 472 55.7
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 2.3e-127 459.9 606 46.7
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 3.0e-127 459.5 475 56.0
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 3.9e-127 459.1 474 53.8
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 5.1e-127 458.8 475 55.2
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 8.8e-127 458.0 467 56.7
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 8.8e-127 458.0 467 56.7
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 1.1e-126 457.6 479 56.6
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 1.5e-126 457.2 479 54.7
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 2.0e-126 456.8 481 53.6
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 3.3e-126 456.1 479 54.7
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 1.3e-125 454.1 474 55.1
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.7e-125 453.8 474 56.1
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 4.8e-125 452.2 477 53.2
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 5.3e-124 448.7 471 54.1
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 9.1e-124 448.0 473 55.8
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.2e-123 447.6 483 54.2
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 5.9e-123 445.3 469 53.9
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 1.2e-120 437.6 546 49.6
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.0e-119 434.5 504 51.4
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 2.9e-114 416.4 476 51.1
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 1.6e-112 410.6 475 52.0
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.4e-111 407.5 483 50.3
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 2.6e-110 403.3 483 51.1
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 5.7e-110 402.1 467 53.1
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.3e-109 401.0 400 53.2
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.7e-109 400.6 483 49.7
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 2.2e-109 400.2 478 49.8
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 3.7e-109 399.4 467 50.1
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 3.7e-109 399.4 474 48.7
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 1.4e-108 397.5 475 50.1
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.4e-108 397.5 436 56.4
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 2.4e-108 396.7 468 49.1
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 7.0e-108 395.2 468 49.1
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 3.5e-107 392.9 472 48.9
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 5.9e-107 392.1 469 50.1
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 7.7e-107 391.7 472 49.6
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 1.0e-106 391.3 472 51.7
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.3e-106 391.0 469 50.1
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 1.3e-106 391.0 473 49.0
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 6.5e-106 388.7 486 49.4
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 1.9e-105 387.1 472 48.3
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 4.2e-105 386.0 473 46.9
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 4.2e-105 386.0 349 58.7
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 2.1e-104 383.6 458 47.8
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 3.6e-104 382.9 465 48.8
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 1.0e-103 381.3 534 45.9
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 1.4e-103 380.9 503 47.9
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.8e-103 380.6 471 47.1
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 5.2e-103 379.0 472 48.1
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 5.2e-103 379.0 474 51.3
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 5.2e-103 379.0 482 49.6
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.2e-102 377.9 471 48.6
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.2e-102 377.9 474 48.3
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.5e-102 377.5 472 47.9
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 9.8e-102 374.8 478 48.1
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 1.3e-101 374.4 479 47.4
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 8.3e-101 371.7 470 46.8
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.1e-100 371.3 467 48.8
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 5.4e-100 369.0 477 45.9
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 1.2e-99 367.9 477 48.4
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 2.7e-99 366.7 498 45.6
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 2.3e-98 363.6 477 44.4
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 5.0e-98 362.5 471 46.3
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 1.1e-97 361.3 458 47.2
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.5e-97 360.9 478 45.0
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 4.2e-97 359.4 471 46.3
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 5.5e-97 359.0 457 46.4
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 1.2e-96 357.8 490 46.1
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 1.2e-96 357.8 471 45.6
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.6e-96 357.5 374 55.9
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 8.0e-96 355.1 451 48.1
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 5.2e-95 352.4 474 44.3
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 2.9e-93 346.7 473 44.4
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.1e-92 344.7 457 43.8
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 7.0e-92 342.0 468 46.6
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 2.7e-91 340.1 486 44.9
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 1.2e-88 331.3 308 56.8
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 1.2e-88 331.3 463 44.3
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 4.7e-88 329.3 461 44.5
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.7e-85 320.9 374 46.5
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 1.7e-85 320.9 369 49.1
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 6.4e-85 318.9 378 52.4
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 6.4e-85 318.9 463 43.0
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.1e-84 318.2 437 44.9
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 1.2e-83 314.7 429 45.5
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 1.7e-82 310.8 369 45.5
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 2.5e-81 307.0 446 43.0
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 4.0e-79 299.7 475 42.3
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.2e-78 298.1 384 49.0
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 1.2e-78 298.1 367 48.5
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 4.9e-77 292.7 429 42.7
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.7e-74 284.3 315 49.8
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 1.9e-73 280.8 356 47.5
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 4.3e-73 279.6 365 44.1
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 1.2e-72 278.1 370 46.2
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.7e-69 267.7 242 57.4
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 4.1e-68 263.1 430 41.2
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 4.6e-67 259.6 208 62.5
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 7.8e-67 258.8 362 44.8
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.3e-65 253.1 311 43.7
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.3e-65 253.1 311 43.7
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 2.3e-58 230.7 461 34.7
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 3.9e-58 229.9 346 42.8
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 4.3e-57 226.5 396 36.9
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 7.3e-57 225.7 379 39.6
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 1.1e-55 221.9 144 75.0
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 6.9e-55 219.2 293 40.3
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 5.8e-54 216.1 414 37.0
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 9.9e-54 215.3 307 40.7
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 3.8e-53 213.4 369 41.2
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 1.0e-50 205.3 400 36.2
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 8.7e-50 202.2 225 50.2
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 2.5e-49 200.7 242 45.5
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 4.8e-48 196.4 256 45.7
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 2.4e-47 194.1 210 51.4
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 3.4e-46 190.3 217 48.8
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 1.4e-44 184.9 264 40.9
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 7.4e-41 172.6 504 30.0
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 1.7e-37 161.4 140 59.3
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.6e-35 154.8 102 73.5
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 1.1e-33 148.7 207 45.9
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 9.6e-33 145.6 195 44.6
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 3.9e-26 123.6 74 78.4
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 6.7e-26 122.9 106 61.3
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.8e-24 117.5 185 42.2
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 3.4e-22 110.5 198 37.9
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 5.0e-21 106.7 80 62.5
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 6.5e-21 106.3 190 36.3
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 8.5e-21 105.9 72 68.1
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 7.4e-17 92.8 86 57.0
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 6.9e-15 86.3 63 63.5
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 2.0e-14 84.7 117 43.6
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 2.3e-10 71.2 52 65.4
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 1.2e-06 58.9 34 79.4


User provided reference genes

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