Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 1.3e-120 436.8 285 100.0
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 8.4e-72 274.6 284 63.0
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.9e-68 263.5 285 60.7
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 1.8e-66 256.9 285 63.9
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 4.0e-66 255.8 285 58.9
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.2e-65 254.2 284 59.5
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 1.5e-65 253.8 281 64.4
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.0e-65 253.4 284 58.1
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 3.4e-65 252.7 279 58.4
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 3.4e-65 252.7 282 59.9
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 1.1e-63 247.7 279 58.4
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 1.1e-63 247.7 285 60.0
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 1.1e-63 247.7 281 59.1
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 7.1e-63 245.0 285 67.7
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 1.6e-62 243.8 285 60.0
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 3.5e-62 242.7 285 62.1
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 4.6e-62 242.3 285 57.5
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 7.9e-62 241.5 274 63.1
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 7.9e-62 241.5 285 57.2
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 1.3e-61 240.7 281 58.7
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 1.8e-61 240.4 285 62.8
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 2.3e-61 240.0 283 62.2
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 3.9e-61 239.2 285 58.2
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 1.1e-60 237.7 272 61.0
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 1.9e-60 236.9 286 60.5
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 7.4e-60 235.0 287 57.8
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 9.6e-60 234.6 286 65.4
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 2.8e-59 233.0 284 57.7
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 6.2e-59 231.9 285 57.9
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 1.1e-58 231.1 285 55.8
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 1.4e-58 230.7 281 54.8
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 4.0e-58 229.2 286 63.6
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 2.6e-57 226.5 285 54.4
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 7.6e-57 224.9 285 61.4
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 9.9e-57 224.6 276 53.6
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 2.2e-56 223.4 285 59.6
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 4.9e-56 222.2 263 57.8
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 4.9e-56 222.2 282 53.9
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 6.4e-56 221.9 278 55.0
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 8.4e-56 221.5 269 54.6
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 1.1e-55 221.1 285 59.6
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 2.5e-55 219.9 280 54.6
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 9.3e-55 218.0 281 53.4
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 2.1e-54 216.9 280 52.5
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 4.6e-54 215.7 285 53.0
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 1.8e-53 213.8 272 52.9
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 2.3e-53 213.4 283 53.7
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 5.6e-52 208.8 287 52.3
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 9.6e-52 208.0 286 53.1
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 1.8e-50 203.8 279 51.3
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 1.8e-50 203.8 291 49.8
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 1.8e-50 203.8 282 57.8
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 6.9e-50 201.8 280 53.2
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 2.0e-49 200.3 265 52.5
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 2.0e-49 200.3 279 48.0
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 2.6e-49 199.9 278 50.4
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 5.8e-49 198.7 286 51.0
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.7e-48 197.2 285 50.9
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 1.9e-47 193.7 286 56.3
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 2.5e-47 193.4 286 56.3
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 9.3e-47 191.4 286 55.9
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 2.1e-46 190.3 280 49.6
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.1e-46 190.3 279 46.2
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 2.7e-46 189.9 276 50.4
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 1.0e-45 188.0 301 46.2
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 1.3e-45 187.6 274 50.4
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 2.3e-45 186.8 276 58.0
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 5.1e-45 185.7 285 46.7
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 5.1e-45 185.7 289 49.1
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 6.7e-45 185.3 296 47.3
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 6.7e-45 185.3 289 49.5
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 8.7e-45 184.9 284 49.3
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 8.7e-45 184.9 274 49.6
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 1.5e-44 184.1 197 64.0
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 1.9e-44 183.7 289 48.8
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.9e-44 183.7 287 50.9
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 2.5e-44 183.3 272 44.5
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 7.4e-44 181.8 284 48.2
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 8.2e-43 178.3 285 48.8
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 1.3e-40 171.0 278 47.5
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 2.2e-40 170.2 274 47.8
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 2.2e-40 170.2 242 51.7
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 6.5e-40 168.7 278 42.4
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 4.2e-39 166.0 287 45.6
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 1.0e-37 161.4 266 46.2
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 1.4e-37 161.0 279 39.8
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 2.3e-37 160.2 281 43.1
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 4.3e-36 156.0 273 42.9
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 5.7e-36 155.6 271 42.4
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 7.4e-36 155.2 279 40.1
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 7.4e-36 155.2 303 39.6
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 9.7e-36 154.8 259 45.9
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 2.8e-35 153.3 292 44.5
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 4.8e-35 152.5 197 50.3
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 1.4e-34 151.0 280 38.2
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 2.0e-33 147.1 284 38.0
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 2.0e-33 147.1 271 53.9
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 2.0e-33 147.1 270 54.8
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 3.4e-33 146.4 270 40.0
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 5.9e-33 145.6 282 43.3
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 1.0e-32 144.8 270 40.7
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 1.3e-32 144.4 219 48.4
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 1.7e-32 144.1 270 40.0
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 1.7e-32 144.1 269 51.3
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 2.9e-32 143.3 270 40.4
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 3.8e-32 142.9 270 41.9
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 3.8e-32 142.9 270 41.9
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 5.0e-32 142.5 275 49.8
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 3.2e-31 139.8 269 46.8
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 5.5e-31 139.0 291 49.5
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 2.1e-30 137.1 269 45.7
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 2.7e-30 136.7 272 45.2
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.0e-29 134.8 252 42.1
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 1.4e-29 134.4 274 39.4
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 2.3e-29 133.7 269 50.6
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 2.3e-29 133.7 283 46.3
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 8.8e-29 131.7 262 43.1
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 8.8e-29 131.7 262 44.3
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 3.3e-28 129.8 285 49.8
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 3.3e-28 129.8 285 49.8
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 3.3e-28 129.8 197 48.2
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 1.3e-27 127.9 285 49.5
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 1.3e-27 127.9 285 46.0
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 1.3e-27 127.9 285 49.5
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 1.7e-27 127.5 268 44.8
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 2.8e-27 126.7 269 44.6
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 2.8e-27 126.7 200 44.0
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 3.7e-27 126.3 274 52.2
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 4.8e-27 125.9 203 46.3
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 1.1e-26 124.8 278 47.5
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 3.1e-26 123.2 281 48.0
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 5.3e-26 122.5 274 48.2
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 1.0e-24 118.2 199 37.7
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 1.6e-22 110.9 284 47.2
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.5e-20 104.4 113 52.2
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 2.8e-19 100.1 175 41.1
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 2.4e-18 97.1 188 49.5
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 9.1e-18 95.1 113 50.4
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 3.5e-17 93.2 81 72.8
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 2.9e-16 90.1 266 31.2
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 2.9e-16 90.1 129 51.2
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.2e-12 78.2 169 50.9
Nn1g06084 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.9e-07 60.8 38 71.1


User provided reference genes

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