Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 0.0e+00 1695.2 909 100.0
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 0.0e+00 1125.9 936 63.5
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 1.6e-310 1069.3 923 61.9
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 3.4e-308 1061.6 925 61.4
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 1.7e-307 1059.3 927 64.0
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.9e-307 1058.5 913 62.0
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 4.3e-303 1044.6 932 60.0
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 8.9e-301 1036.9 921 61.3
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 3.5e-297 1025.0 921 59.9
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 1.2e-292 1010.0 923 58.7
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 1.5e-292 1009.6 917 59.2
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 4.9e-291 1004.6 908 59.1
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 2.1e-286 989.2 909 58.7
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 8.1e-286 987.3 913 57.7
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 2.0e-284 982.6 922 57.3
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 1.3e-283 979.9 916 57.4
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.2e-281 973.4 929 58.3
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 4.6e-281 971.5 916 57.2
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 1.9e-279 966.1 919 57.1
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 8.1e-278 960.7 935 57.2
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 3.1e-277 958.7 915 56.8
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 1.5e-276 956.4 934 56.9
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 4.4e-276 954.9 922 56.4
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 5.8e-276 954.5 925 57.1
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 7.6e-276 954.1 924 57.9
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 1.7e-275 953.0 934 56.6
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 1.7e-275 953.0 934 56.1
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 2.9e-275 952.2 920 56.3
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 1.1e-274 950.3 939 55.5
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 1.3e-272 943.3 919 58.7
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 5.8e-268 927.9 909 55.4
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 9.9e-268 927.2 865 59.1
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 1.7e-267 926.4 804 61.7
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 1.7e-267 926.4 928 56.1
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 1.8e-264 916.4 941 57.2
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 5.1e-264 914.8 895 56.2
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 3.3e-263 912.1 990 52.8
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 4.3e-263 911.8 904 59.2
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 1.6e-262 909.8 938 57.1
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 1.6e-262 909.8 901 58.7
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 2.8e-262 909.1 922 55.0
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 4.8e-262 908.3 910 56.3
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 2.4e-261 906.0 907 54.6
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 6.9e-261 904.4 902 59.4
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 9.0e-261 904.0 910 54.4
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 1.2e-260 903.7 900 58.7
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 1.5e-260 903.3 920 54.0
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 3.4e-260 902.1 910 54.6
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 5.8e-260 901.4 902 58.8
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 5.8e-260 901.4 934 53.7
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 1.4e-258 896.7 910 54.3
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 2.3e-256 889.4 907 58.7
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 5.1e-256 888.3 930 51.6
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 4.3e-255 885.2 909 57.6
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 3.7e-254 882.1 926 54.6
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 4.0e-253 878.6 899 58.2
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 3.4e-252 875.5 917 51.4
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 1.0e-251 874.0 934 52.2
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 2.9e-251 872.5 927 53.2
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 1.4e-250 870.2 934 51.8
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 1.9e-250 869.8 959 52.2
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 2.7e-249 865.9 908 57.3
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 6.0e-249 864.8 922 53.3
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 7.9e-249 864.4 922 53.0
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 1.5e-247 860.1 932 52.4
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 4.1e-245 852.0 938 56.2
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 9.0e-245 850.9 929 52.0
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 9.1e-237 824.3 920 52.8
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 2.6e-236 822.8 938 48.8
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 5.0e-235 818.5 916 52.4
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 2.3e-232 809.7 718 59.1
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 2.6e-231 806.2 921 48.5
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 3.3e-231 805.8 904 52.8
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 4.4e-231 805.4 905 50.4
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 2.0e-228 796.6 920 51.7
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 3.2e-226 789.3 920 50.1
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 2.7e-225 786.2 914 51.2
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 1.5e-223 780.4 922 51.7
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 2.0e-223 780.0 671 60.5
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 4.4e-223 778.9 708 60.3
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 2.4e-221 773.1 739 60.9
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 7.0e-221 771.5 906 50.3
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 4.5e-220 768.8 910 48.5
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 3.5e-212 742.7 1151 41.3
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 1.1e-210 737.6 920 50.8
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 2.1e-209 733.4 903 51.8
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 1.0e-208 731.1 832 55.3
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 1.5e-207 727.2 914 49.1
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.3e-206 724.2 892 48.7
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 3.4e-199 699.5 1036 43.5
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 2.3e-195 686.8 668 60.8
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 8.6e-195 684.9 644 57.5
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 6.1e-193 678.7 702 55.0
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 4.4e-191 672.5 761 49.7
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 5.2e-184 649.0 928 44.1
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 1.3e-174 617.8 498 64.1
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.3e-171 607.8 551 59.0
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 1.7e-171 607.4 918 42.6
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 1.6e-156 557.8 909 40.5
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 7.8e-156 555.4 960 40.5
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.6e-151 540.4 450 62.0
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 3.5e-148 530.0 472 59.3
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 1.5e-130 471.5 503 51.1
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 8.2e-129 465.7 546 48.4
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 2.2e-126 457.6 413 58.4
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 1.1e-125 455.3 480 55.2
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 3.2e-117 427.2 484 52.3
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 2.1e-116 424.5 929 36.2
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 4.7e-108 396.7 479 46.3
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 4.7e-108 396.7 478 48.5
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 1.0e-107 395.6 355 59.4
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.6e-100 371.7 418 52.2
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 3.6e-100 370.5 396 54.5
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 2.0e-98 364.8 222 77.9
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 2.0e-98 364.8 222 77.9
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.2e-95 355.5 473 47.6
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 5.9e-95 353.2 373 53.4
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.9e-93 348.2 461 46.2
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 6.6e-86 323.2 220 71.8
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 5.5e-85 320.1 320 55.6
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 5.2e-83 313.5 735 31.4
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 1.3e-81 308.9 544 37.1
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 1.7e-81 308.5 268 60.8
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 2.7e-71 274.6 350 47.1
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 1.0e-70 272.7 321 56.4
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.0e-70 270.4 242 61.2
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.6e-70 270.0 457 38.3
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 6.6e-62 243.4 238 55.0
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 1.4e-59 235.7 511 31.9
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.3e-59 235.0 304 46.4
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 7.6e-58 229.9 605 32.4
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.1e-51 209.5 189 55.0
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 2.4e-51 208.4 483 30.2
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 1.7e-49 202.2 381 41.5
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.2e-49 201.8 248 48.8
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.1e-43 183.0 113 77.0
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.2e-41 175.3 194 48.5
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.8e-36 158.3 137 55.5
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 1.4e-35 156.0 169 55.6
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 4.0e-35 154.5 190 50.5
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 4.0e-35 154.5 169 55.0
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 4.5e-34 151.0 158 51.9
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 4.5e-34 151.0 158 51.9
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 1.3e-30 139.4 151 54.3
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 1.1e-29 136.3 110 65.5
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 4.6e-23 114.4 78 75.6
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 1.0e-22 113.2 617 24.0
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 6.2e-20 104.0 129 44.2
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-19 102.8 156 41.0
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 5.8e-18 97.4 79 58.2
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 1.1e-16 93.2 80 62.5
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 3.2e-16 91.7 135 45.9
SEGI_41292 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 5.5e-16 90.9 196 33.2
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 2.2e-12 79.0 63 54.0
CARHR185280 Cardamine hirsuta HOM05D004183 ORTHO05D005022 5.3e-11 74.3 45 75.6
QL05p081774 Quercus lobata HOM05D004183 ORTHO05D005022 9.0e-11 73.6 69 58.0
Hma1.2p1_0197F.1_g085110 Hydrangea macrophylla HOM05D004183 ORTHO05D008470 2.0e-10 72.4 46 73.9
Psat5g100440 Pisum sativum HOM05D004183 ORTHO05D005022 2.6e-10 72.0 145 39.3
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 3.2e-08 65.1 173 32.4
C04p45760 Brassica napus HOM05D004183 ORTHO05D005022 5.5e-08 64.3 77 40.3
BcaB06g27300 Brassica carinata HOM05D004183 ORTHO05D005022 1.2e-07 63.2 77 40.3
BolC4t26161H Brassica oleracea HOM05D004183 ORTHO05D005022 1.2e-07 63.2 77 40.3


User provided reference genes

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