Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 5.4e-256 887.1 431 100.0
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 1.8e-195 686.0 433 76.7
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 1.0e-193 680.2 431 75.6
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 1.0e-193 680.2 431 75.9
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 1.0e-193 680.2 431 77.0
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 2.9e-193 678.7 435 74.9
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 3.8e-193 678.3 433 74.6
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 5.0e-193 677.9 435 74.7
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 6.5e-193 677.6 433 75.3
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 8.5e-193 677.2 414 77.3
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 8.5e-193 677.2 428 74.5
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 1.1e-192 676.8 430 75.6
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 3.2e-192 675.2 435 74.5
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 7.2e-192 674.1 414 77.1
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 1.6e-191 672.9 432 74.1
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 1.8e-190 669.5 431 73.5
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 9.7e-189 663.7 432 74.3
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 9.7e-189 663.7 432 74.3
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 1.3e-188 663.3 418 74.4
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 2.2e-188 662.5 438 72.8
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 3.7e-188 661.8 436 74.1
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 4.8e-188 661.4 413 74.3
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 3.1e-187 658.7 431 72.9
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 7.0e-187 657.5 406 76.6
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 4.5e-186 654.8 431 72.6
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 5.9e-186 654.4 429 72.7
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.3e-185 653.3 416 74.3
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 1.1e-184 650.2 417 75.8
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 4.2e-184 648.3 433 73.4
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 9.4e-184 647.1 431 72.6
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 2.3e-182 642.5 436 70.2
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 2.3e-182 642.5 414 72.5
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 3.0e-182 642.1 433 71.4
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 8.8e-182 640.6 431 71.2
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 1.5e-181 639.8 431 70.1
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 2.6e-181 639.0 416 72.6
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 3.3e-181 638.6 420 73.6
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 9.7e-181 637.1 428 71.7
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 1.3e-180 636.7 426 71.6
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 3.7e-180 635.2 430 72.3
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 4.8e-180 634.8 452 70.1
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 8.2e-180 634.0 414 71.3
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.1e-179 633.6 432 70.4
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 1.4e-179 633.3 427 70.3
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 2.4e-179 632.5 435 71.3
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 4.1e-179 631.7 434 70.5
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 5.3e-179 631.3 435 71.0
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 5.3e-179 631.3 431 71.0
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 1.6e-178 629.8 428 69.9
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 1.6e-178 629.8 447 69.6
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 3.5e-178 628.6 426 71.1
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 4.5e-178 628.2 420 70.7
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 7.7e-178 627.5 463 67.6
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 1.5e-176 623.2 422 70.6
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 1.9e-176 622.9 422 70.4
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 1.9e-176 622.9 435 68.0
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 1.9e-176 622.9 444 70.0
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 3.2e-176 622.1 430 70.2
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 5.5e-176 621.3 428 69.9
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 5.5e-176 621.3 434 70.3
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 7.2e-176 620.9 423 70.9
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.6e-175 619.8 440 68.4
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 2.1e-175 619.4 432 68.5
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.0e-174 617.1 419 70.4
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.8e-174 616.3 419 70.2
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 2.3e-174 615.9 415 71.3
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 2.3e-174 615.9 415 71.3
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 4.0e-174 615.1 409 70.2
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 1.2e-173 613.6 427 69.6
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 1.2e-173 613.6 427 69.6
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 1.2e-173 613.6 427 69.6
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 1.2e-173 613.6 423 70.0
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 1.5e-173 613.2 425 68.7
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 9.7e-173 610.5 431 69.1
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 1.7e-172 609.8 431 67.7
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 2.2e-172 609.4 429 68.3
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 2.8e-172 609.0 423 69.5
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 3.7e-172 608.6 414 68.8
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 6.3e-172 607.8 425 67.5
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 8.3e-172 607.4 431 68.2
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 3.1e-171 605.5 420 69.5
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 7.0e-171 604.4 439 67.2
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 1.2e-170 603.6 426 68.1
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 1.2e-170 603.6 426 68.1
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 7.7e-170 600.9 425 67.1
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 1.7e-169 599.7 412 70.1
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 2.2e-169 599.4 413 70.5
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 6.5e-169 597.8 425 66.4
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 1.1e-168 597.0 427 66.0
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 8.0e-167 590.9 412 69.4
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 1.8e-166 589.7 433 67.2
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 4.0e-166 588.6 413 68.0
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 3.4e-165 585.5 437 65.2
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 2.8e-164 582.4 427 65.3
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 3.7e-164 582.0 429 65.7
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 1.4e-163 580.1 430 65.6
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 1.8e-163 579.7 433 63.3
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 4.1e-163 578.6 397 67.8
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 2.0e-162 576.2 433 63.7
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 2.7e-162 575.9 426 65.3
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 5.5e-160 568.2 429 64.1
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 2.3e-158 562.8 415 66.7
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 8.9e-158 560.8 433 62.1
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 1.2e-157 560.5 433 64.9
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.2e-156 556.2 421 63.2
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 8.0e-151 537.7 355 71.0
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 1.7e-148 530.0 414 61.6
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.2e-148 529.6 422 61.1
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 3.5e-146 522.3 436 61.2
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 3.9e-145 518.8 423 58.9
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 1.1e-144 517.3 433 57.0
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 4.7e-143 511.9 416 60.3
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 6.2e-143 511.5 433 57.0
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 3.1e-142 509.2 433 56.1
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 8.9e-142 507.7 411 59.4
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.0e-137 494.2 450 54.9
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 3.4e-133 479.2 411 56.4
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 4.1e-131 472.2 435 52.6
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 3.6e-127 459.1 405 57.8
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 2.9e-124 449.5 308 68.8
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 1.3e-121 440.7 296 68.9
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 2.5e-120 436.4 432 51.9
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 3.0e-113 412.9 431 53.8
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 5.6e-112 408.7 412 51.0
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 9.6e-112 407.9 411 49.9
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 4.9e-108 395.6 431 52.2
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 1.6e-106 390.6 419 46.8
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 9.6e-104 381.3 267 67.0
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.0e-100 371.3 348 50.9
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 9.3e-91 338.2 434 41.9
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 2.0e-85 320.5 241 65.1
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 1.0e-84 318.2 263 61.6
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 1.0e-84 318.2 226 67.3
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.1e-80 304.7 293 49.5
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 3.8e-60 236.5 154 73.4
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 1.4e-54 218.0 157 64.3
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.7e-53 213.8 310 40.0
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.3e-52 211.5 139 70.5
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.5e-48 198.0 130 68.5
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 1.1e-46 191.8 112 76.8
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 2.3e-41 174.1 146 60.3
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 2.6e-40 170.6 126 69.8
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 1.3e-39 168.3 159 57.9
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 5.0e-36 156.4 406 28.3
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 7.3e-35 152.5 157 55.4
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.4e-33 148.3 208 44.2
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 5.4e-22 109.8 92 63.0
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 2.3e-20 104.4 99 58.6
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 8.6e-20 102.4 79 63.3
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 1.6e-18 98.2 80 60.0
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 4.7e-18 96.7 83 59.0
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 4.0e-17 93.6 66 71.2
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.5e-16 91.7 90 50.0
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.4e-16 90.1 146 33.6
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 5.8e-16 89.7 72 59.7
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 4.9e-15 86.7 62 72.6
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 1.4e-14 85.1 68 60.3
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 1.1e-11 75.5 61 57.4
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 1.9e-11 74.7 58 69.0
Cpa.g.c45316 Carica papaya HOM05D004203 ORTHO05D004830 1.5e-08 65.1 42 66.7
Pp3c14_4390 Physcomitrium patens HOM05D004203 ORTHO05D004830 1.7e-07 61.6 72 40.3
BcaB05g24942 Brassica carinata HOM05D004203 ORTHO05D004830 2.9e-07 60.8 47 53.2
BcaB06g26577 Brassica carinata HOM05D004203 ORTHO05D004830 3.8e-07 60.5 55 58.2
BcaC07g38231 Brassica carinata HOM05D004203 ORTHO05D004830 4.9e-07 60.1 58 56.9
MCO08G255 Micromonas commoda HOM05D004203 ORTHO05D004830 4.2e-06 57.0 106 33.0
SEGI_15796 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 7.1e-06 56.2 50 58.0


User provided reference genes

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