Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 1.8e-74 282.7 163 100.0
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.2e-41 173.7 154 64.3
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 3.4e-41 172.2 164 57.9
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 1.3e-40 170.2 156 65.4
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 1.8e-39 166.4 121 67.8
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 1.6e-38 163.3 119 74.8
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.0e-37 160.6 122 65.6
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 1.3e-37 160.2 139 65.5
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 2.9e-37 159.1 123 65.9
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 2.9e-37 159.1 162 59.9
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 3.8e-37 158.7 165 59.4
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 1.1e-36 157.1 165 58.2
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 1.1e-36 157.1 148 60.1
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 2.5e-36 156.0 150 60.7
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 2.5e-36 156.0 133 60.2
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 4.2e-36 155.2 156 62.2
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 4.2e-36 155.2 85 83.5
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 4.2e-36 155.2 148 56.8
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 1.2e-35 153.7 111 68.5
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 1.2e-35 153.7 147 55.1
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 1.6e-35 153.3 158 57.6
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 2.7e-35 152.5 122 62.3
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 3.6e-35 152.1 151 56.3
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 4.7e-35 151.8 160 58.8
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 6.1e-35 151.4 163 57.7
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 1.0e-34 150.6 165 60.0
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.4e-34 150.2 149 58.4
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 1.4e-34 150.2 126 69.0
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 1.4e-34 150.2 150 56.7
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 1.4e-34 150.2 154 55.8
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.8e-34 149.8 169 58.0
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 3.0e-34 149.1 166 58.4
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 4.0e-34 148.7 124 69.4
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 4.0e-34 148.7 166 55.4
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 5.2e-34 148.3 110 64.5
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 5.2e-34 148.3 151 55.6
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 5.2e-34 148.3 104 71.2
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 6.8e-34 147.9 169 58.0
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 6.8e-34 147.9 155 60.6
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 6.8e-34 147.9 160 56.2
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 8.8e-34 147.5 125 67.2
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 1.2e-33 147.1 99 77.8
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 1.5e-33 146.7 161 54.0
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 3.4e-33 145.6 142 55.6
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 3.4e-33 145.6 117 61.5
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 4.4e-33 145.2 147 61.2
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 4.4e-33 145.2 126 65.9
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 9.8e-33 144.1 81 81.5
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 2.8e-32 142.5 112 63.4
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 2.8e-32 142.5 81 82.7
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 2.8e-32 142.5 84 76.2
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 3.7e-32 142.1 158 54.4
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 3.7e-32 142.1 135 57.8
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 4.8e-32 141.7 80 81.2
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 4.8e-32 141.7 99 78.8
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 6.3e-32 141.4 79 82.3
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 8.3e-32 141.0 98 75.5
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 8.3e-32 141.0 95 82.1
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 1.4e-31 140.2 100 66.0
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 5.4e-31 138.3 98 77.6
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 5.4e-31 138.3 97 74.2
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 5.4e-31 138.3 162 55.6
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 5.4e-31 138.3 105 66.7
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 7.0e-31 137.9 100 76.0
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 7.0e-31 137.9 81 77.8
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 9.1e-31 137.5 77 84.4
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 1.2e-30 137.1 162 53.7
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 2.0e-30 136.3 99 71.7
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 2.0e-30 136.3 101 65.3
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 2.7e-30 136.0 161 52.2
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 2.7e-30 136.0 153 56.9
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 3.5e-30 135.6 137 56.9
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 1.3e-29 133.7 78 78.2
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.7e-29 133.3 120 64.2
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 1.7e-29 133.3 93 77.4
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 2.3e-29 132.9 80 77.5
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 2.3e-29 132.9 82 73.2
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 2.9e-29 132.5 99 65.7
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.9e-29 132.5 161 52.8
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 3.8e-29 132.1 93 76.3
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 8.6e-29 131.0 165 54.5
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 1.5e-28 130.2 98 72.4
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 1.5e-28 130.2 96 72.9
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 1.9e-28 129.8 98 65.3
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 1.9e-28 129.8 171 51.5
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 7.2e-28 127.9 80 73.8
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 7.2e-28 127.9 92 72.8
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 7.2e-28 127.9 97 64.9
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 1.2e-27 127.1 125 60.8
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.2e-27 127.1 137 52.6
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 2.8e-27 125.9 80 71.2
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 2.8e-27 125.9 95 71.6
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 3.6e-27 125.6 100 68.0
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 4.7e-27 125.2 138 51.4
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 1.4e-26 123.6 99 67.7
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.4e-26 123.6 135 51.9
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 1.4e-26 123.6 141 51.8
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 1.8e-26 123.2 71 78.9
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 2.3e-26 122.9 99 67.7
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 1.2e-25 120.6 99 65.7
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 1.5e-25 120.2 143 55.9
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 4.4e-25 118.6 100 60.0
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 7.5e-25 117.9 72 72.2
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 9.8e-25 117.5 76 69.7
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 1.7e-24 116.7 99 65.7
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 6.3e-24 114.8 74 70.3
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 8.3e-24 114.4 78 65.4
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 8.3e-24 114.4 78 65.4
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 8.3e-24 114.4 78 65.4
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 8.3e-24 114.4 78 65.4
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 8.3e-24 114.4 95 65.3
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 1.1e-23 114.0 95 66.3
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 1.1e-23 114.0 127 51.2
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 1.8e-23 113.2 131 51.9
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 2.4e-23 112.8 97 70.1
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 9.2e-23 110.9 74 68.9
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 4.5e-22 108.6 73 74.0
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 2.9e-21 105.9 139 49.6
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 1.1e-20 104.0 113 50.4
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 7.3e-20 101.3 79 68.4
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 1.2e-19 100.5 98 55.1
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 1.6e-19 100.1 95 58.9
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 6.1e-19 98.2 118 44.1
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 7.5e-17 91.3 54 74.1
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 2.2e-16 89.7 56 71.4
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.2e-14 84.0 79 62.0
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.2e-14 84.0 79 62.0
TAR633G1766 Trochodendron aralioides HOM05D005516 ORTHO05D006713 1.6e-14 83.6 110 48.2
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 2.7e-14 82.8 64 71.9
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 3.5e-14 82.4 110 43.6
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 6.0e-14 81.6 53 67.9
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 6.0e-14 81.6 53 67.9
Nn6g32378 Nelumbo nucifera HOM05D005516 ORTHO05D006713 5.2e-10 68.6 79 46.8
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 7.5e-09 64.7 51 58.8
Sabra19G0050600 Salix brachista HOM05D005516 ORTHO05D006713 3.7e-08 62.4 158 31.0


User provided reference genes

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