Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1139 Cannabis sativa HOM05D006680 ORTHO05D008206 1.3e-45 186.4 124 100.0
ClCG00G005610 Citrullus lanatus HOM05D006680 ORTHO05D008206 1.5e-38 162.9 96 85.4
Cpa.g.sc16.184 Carica papaya HOM05D006680 ORTHO05D008206 5.9e-38 161.0 96 83.3
Ciclev10006049m.g Citrus clementina HOM05D006680 ORTHO05D008206 1.7e-37 159.5 96 81.2
Manes.15G011600 Manihot esculenta HOM05D006680 ORTHO05D008206 1.7e-37 159.5 123 66.7
Manes.03G196700 Manihot esculenta HOM05D006680 ORTHO05D008206 6.5e-37 157.5 93 82.8
Sabra10G0008200 Salix brachista HOM05D006680 ORTHO05D008206 8.5e-37 157.1 95 80.0
Dinv29759 Davidia involucrata HOM05D006680 ORTHO05D008206 1.1e-36 156.8 96 79.2
Thecc.04G286300 Theobroma cacao HOM05D006680 ORTHO05D008206 1.1e-36 156.8 92 83.7
TWI09G0327 Tripterygium wilfordii HOM05D006680 ORTHO05D008206 1.9e-36 156.0 92 81.5
Gohir.A10G164900 Gossypium hirsutum HOM05D006680 ORTHO05D008206 4.2e-36 154.8 95 78.9
Gohir.D10G171100 Gossypium hirsutum HOM05D006680 ORTHO05D008206 4.2e-36 154.8 95 78.9
Gorai.011G191100 Gossypium raimondii HOM05D006680 ORTHO05D008206 4.2e-36 154.8 95 78.9
Potri.008G221000 Populus trichocarpa HOM05D006680 ORTHO05D008206 5.5e-36 154.5 123 65.0
THA.LOC104818922 Tarenaya hassleriana HOM05D006680 ORTHO05D008206 5.5e-36 154.5 96 82.3
Carub.0003s0642 Capsella rubella HOM05D006680 ORTHO05D008206 7.2e-36 154.1 96 79.2
Oeu063359.1 Olea europaea HOM05D006680 ORTHO05D008206 9.4e-36 153.7 96 80.2
Lj4g0016566 Lotus japonicus HOM05D006680 ORTHO05D008206 1.2e-35 153.3 91 82.4
Atru.chr4.2870 Acer truncatum HOM05D006680 ORTHO05D008206 2.1e-35 152.5 96 78.1
MD13G1167200 Malus domestica HOM05D006680 ORTHO05D008206 2.1e-35 152.5 96 77.1
Potri.010G013100 Populus trichocarpa HOM05D006680 ORTHO05D008206 2.7e-35 152.1 95 76.8
Oeu001107.1 Olea europaea HOM05D006680 ORTHO05D008206 4.7e-35 151.4 96 78.1
Prupe.1G134500 Prunus persica HOM05D006680 ORTHO05D008206 4.7e-35 151.4 92 81.5
Cc03_g01760 Coffea canephora HOM05D006680 ORTHO05D008206 6.1e-35 151.0 96 76.0
QL06p009590 Quercus lobata HOM05D006680 ORTHO05D008206 6.1e-35 151.0 95 77.9
BraA05t22848Z Brassica rapa HOM05D006680 ORTHO05D008206 7.9e-35 150.6 96 78.1
A03p34950 Brassica napus HOM05D006680 ORTHO05D008206 1.0e-34 150.2 96 78.1
C03p42530 Brassica napus HOM05D006680 ORTHO05D008206 1.0e-34 150.2 96 78.1
BolC3t16523H Brassica oleracea HOM05D006680 ORTHO05D008206 1.0e-34 150.2 96 78.1
BraA03t12675Z Brassica rapa HOM05D006680 ORTHO05D008206 1.0e-34 150.2 96 78.1
CAN.G129.31 Capsicum annuum HOM05D006680 ORTHO05D008206 1.0e-34 150.2 96 77.1
CARHR081510 Cardamine hirsuta HOM05D006680 ORTHO05D008206 1.4e-34 149.8 96 77.1
CiPaw.01G147500 Carya illinoinensis HOM05D006680 ORTHO05D008206 1.8e-34 149.4 96 76.0
Nitab4.5_0002761g0070 Nicotiana tabacum HOM05D006680 ORTHO05D008206 1.8e-34 149.4 96 76.0
VMungo1215G2846 Vigna mungo HOM05D006680 ORTHO05D008206 1.8e-34 149.4 91 80.2
BcaC05g29822 Brassica carinata HOM05D006680 ORTHO05D008206 2.3e-34 149.1 96 77.1
BolC5t34701H Brassica oleracea HOM05D006680 ORTHO05D008206 2.3e-34 149.1 96 77.1
Medtr4g120020 Medicago truncatula HOM05D006680 ORTHO05D008206 3.0e-34 148.7 118 73.7
TPR.G3164 Trifolium pratense HOM05D006680 ORTHO05D008206 5.1e-34 147.9 91 79.1
AT3G06890 Arabidopsis thaliana HOM05D006680 ORTHO05D008206 6.7e-34 147.5 96 76.0
Thhalv10021931m.g Eutrema salsugineum HOM05D006680 ORTHO05D008206 8.8e-34 147.1 96 76.0
AL3G18020 Arabidopsis lyrata HOM05D006680 ORTHO05D008206 1.1e-33 146.7 96 76.0
A05p41250 Brassica napus HOM05D006680 ORTHO05D008206 1.1e-33 146.7 96 77.1
Gohir.A09G238300 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.1e-33 146.7 95 74.7
Gohir.D09G239200 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.1e-33 146.7 95 74.7
Gorai.006G261900 Gossypium raimondii HOM05D006680 ORTHO05D008206 1.1e-33 146.7 95 74.7
Duzib151G0306 Durio zibethinus HOM05D006680 ORTHO05D008206 2.0e-33 146.0 96 78.1
Psat4g026840 Pisum sativum HOM05D006680 ORTHO05D008206 2.0e-33 146.0 91 80.2
Sed0015603 Sechium edule HOM05D006680 ORTHO05D008206 2.0e-33 146.0 96 74.0
FvH4_4g18340 Fragaria vesca HOM05D006680 ORTHO05D008206 2.6e-33 145.6 92 75.0
FAN07G2082 Fragaria x ananassa HOM05D006680 ORTHO05D008206 2.6e-33 145.6 92 75.0
FAN12G3601 Fragaria x ananassa HOM05D006680 ORTHO05D008206 2.6e-33 145.6 92 75.0
FAN17G1034 Fragaria x ananassa HOM05D006680 ORTHO05D008206 2.6e-33 145.6 92 75.0
Ca_21488_v3 Cicer arietinum L. HOM05D006680 ORTHO05D008206 3.3e-33 145.2 119 64.7
Migut.G00148 Erythranthe guttata HOM05D006680 ORTHO05D008206 3.3e-33 145.2 96 77.1
RcHm_v2.0_Chr4g0422811 Rosa chinensis HOM05D006680 ORTHO05D008206 4.4e-33 144.8 92 76.1
CiPaw.02G082300 Carya illinoinensis HOM05D006680 ORTHO05D008206 5.7e-33 144.4 96 71.9
Duzib212G0294 Durio zibethinus HOM05D006680 ORTHO05D008206 5.7e-33 144.4 96 78.1
Sopen01g028370 Solanum pennellii HOM05D006680 ORTHO05D008206 5.7e-33 144.4 96 74.0
Peaxi162Scf00246g00103 Petunia axillaris HOM05D006680 ORTHO05D008206 7.4e-33 144.1 93 75.3
Sp3g05850 Schrenkiella parvula HOM05D006680 ORTHO05D008206 9.7e-33 143.7 96 74.0
FAN12G3976 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.3e-32 143.3 91 74.7
PGSC0003DMG400011317 Solanum tuberosum HOM05D006680 ORTHO05D008206 1.3e-32 143.3 96 71.9
Nitab4.5_0003466g0010 Nicotiana tabacum HOM05D006680 ORTHO05D008206 1.1e-31 140.2 96 71.9
Phvul.003G097003 Phaseolus vulgaris HOM05D006680 ORTHO05D008206 1.1e-31 140.2 91 75.8
MSTRG.3906 Avicennia marina HOM05D006680 ORTHO05D008206 1.4e-31 139.8 96 70.8
Glyma.07G246700 Glycine max HOM05D006680 ORTHO05D008206 1.8e-31 139.4 92 73.9
Lalb_Chr13g0303561 Lupinus albus HOM05D006680 ORTHO05D008206 1.8e-31 139.4 92 75.0
Peaxi162Scf00646g00027 Petunia axillaris HOM05D006680 ORTHO05D008206 1.8e-31 139.4 96 71.9
DCAR_002469 Daucus carota HOM05D006680 ORTHO05D008206 2.4e-31 139.0 95 70.5
DCAR_027070 Daucus carota HOM05D006680 ORTHO05D008206 4.1e-31 138.3 92 75.0
Hma1.2p1_1185F.1_g265000 Hydrangea macrophylla HOM05D006680 ORTHO05D008206 5.3e-31 137.9 95 73.7
Lalb_Chr07g0177791 Lupinus albus HOM05D006680 ORTHO05D008206 7.0e-31 137.5 92 75.0
TAR370G0002 Trochodendron aralioides HOM05D006680 ORTHO05D008206 9.1e-31 137.1 95 71.6
PGR004G0310 Punica granatum HOM05D006680 ORTHO05D008206 1.6e-30 136.3 97 77.3
SGA_v2.0_scaffold67G22622 Striga asiatica HOM05D006680 ORTHO05D008206 1.6e-30 136.3 96 67.7
ECA240G4018 Erigeron canadensis HOM05D006680 ORTHO05D008206 4.5e-30 134.8 96 68.8
Lsat_1_v5_gn_6_95660 Lactuca sativa HOM05D006680 ORTHO05D008206 4.5e-30 134.8 96 67.7
CSS0010580 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 5.9e-30 134.4 97 71.1
CSS0014864 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 5.9e-30 134.4 97 71.1
CAN.G484.39 Capsicum annuum HOM05D006680 ORTHO05D008206 1.3e-29 133.3 95 69.5
Solyc12g099500.2 Solanum lycopersicum HOM05D006680 ORTHO05D008206 1.7e-29 132.9 92 70.7
Sopen12g034170 Solanum pennellii HOM05D006680 ORTHO05D008206 1.7e-29 132.9 92 70.7
Sc19g0005290 Simmondsia chinensis HOM05D006680 ORTHO05D008206 5.0e-29 131.3 96 67.7
Sc19g0005370 Simmondsia chinensis HOM05D006680 ORTHO05D008206 5.0e-29 131.3 96 67.7
Nn4g25792 Nelumbo nucifera HOM05D006680 ORTHO05D008206 1.1e-28 130.2 96 67.7
Aqoxy2G02951 Aquilegia oxysepala HOM05D006680 ORTHO05D008206 1.5e-28 129.8 96 69.8
MBI19_g25353_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 1.5e-28 129.8 96 66.7
PGSC0003DMG400004705 Solanum tuberosum HOM05D006680 ORTHO05D008206 5.5e-28 127.9 93 69.9
AUR62040379 Chenopodium quinoa HOM05D006680 ORTHO05D008206 9.4e-28 127.1 96 69.8
PSO170G5007 Papaver somniferum HOM05D006680 ORTHO05D008206 2.1e-27 125.9 93 72.0
Nn3g21479 Nelumbo nucifera HOM05D006680 ORTHO05D008206 3.6e-27 125.2 83 73.5
Ah.08g214570 Amaranthus hybridus HOM05D006680 ORTHO05D008206 4.7e-27 124.8 96 67.7
MBI18_g06870_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 4.7e-27 124.8 96 65.6
PSO017G4993 Papaver somniferum HOM05D006680 ORTHO05D008206 4.7e-27 124.8 93 71.0
Rhsim04G0223700 Rhododendron simsii HOM05D006680 ORTHO05D008206 8.8e-26 120.6 96 65.6
Rhsim09G0007300 Rhododendron simsii HOM05D006680 ORTHO05D008206 8.8e-26 120.6 96 65.6
PSO832G1781 Papaver somniferum HOM05D006680 ORTHO05D008206 2.0e-25 119.4 99 60.6
HanXRQChr13g0419971 Helianthus annuus HOM05D006680 ORTHO05D008206 2.6e-25 119.0 93 62.4
Sabra10G0008300 Salix brachista HOM05D006680 ORTHO05D008206 4.4e-25 118.2 94 63.8
PSO210G6323 Papaver somniferum HOM05D006680 ORTHO05D008206 9.7e-25 117.1 99 59.6
DCAR_030521 Daucus carota HOM05D006680 ORTHO05D008206 4.8e-24 114.8 95 63.2
PGR031G3343 Punica granatum HOM05D006680 ORTHO05D008206 6.3e-24 114.4 90 60.0
Thecc.09G272700 Theobroma cacao HOM05D006680 ORTHO05D008206 7.0e-23 110.9 73 74.0
MD16G1168200 Malus domestica HOM05D006680 ORTHO05D008206 5.0e-21 104.8 127 52.8
HPP92_000110 Vanilla planifolia HOM05D006680 ORTHO05D008206 1.1e-20 103.6 95 55.8
Os03g0343800 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 1.9e-20 102.8 91 57.1
HanXRQChr03g0089341 Helianthus annuus HOM05D006680 ORTHO05D008206 7.2e-20 100.9 96 56.2
Thecc.05G268700 Theobroma cacao HOM05D006680 ORTHO05D008206 7.2e-20 100.9 73 71.2
ATR0796G044 Amborella trichopoda HOM05D006680 ORTHO05D008206 4.0e-18 95.1 91 56.0
Zm00001eb124100 Zea mays HOM05D006680 ORTHO05D008206 3.4e-17 92.0 90 53.3
unitig_32.g11869 Utricularia gibba HOM05D006680 ORTHO05D008206 1.3e-16 90.1 96 51.0
Zm00001eb016470 Zea mays HOM05D006680 ORTHO05D008206 1.3e-16 90.1 91 51.6
Eucgr.H03932 Eucalyptus grandis HOM05D006680 ORTHO05D008206 9.1e-15 84.0 99 46.5
Zm00001eb394930 Zea mays HOM05D006680 ORTHO05D008206 2.0e-14 82.8 74 59.5
TAR633G0386 Trochodendron aralioides HOM05D006680 ORTHO05D008206 3.8e-13 78.6 100 46.0
Os07g0673801 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 6.5e-13 77.8 100 43.0
SalBow5G0837 Salvia bowleyana HOM05D006680 ORTHO05D008206 2.8e-08 62.4 93 38.7
Dinv44367 Davidia involucrata HOM05D010970 ORTHO05D012912 4.5e-06 55.1 33 75.8


User provided reference genes

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