Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 0.0e+00 2008.4 1093 100.0
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 0.0e+00 1303.9 1107 65.5
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 0.0e+00 1293.5 1103 63.2
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 0.0e+00 1284.6 1106 65.0
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 0.0e+00 1272.3 1101 64.7
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 0.0e+00 1271.5 1146 64.6
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 0.0e+00 1254.2 1100 62.2
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 0.0e+00 1242.3 1097 62.9
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1239.9 1108 63.5
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 0.0e+00 1239.2 1108 63.7
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 0.0e+00 1234.6 1101 62.2
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1226.8 1124 62.7
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 0.0e+00 1226.1 1101 62.2
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1224.5 1108 63.4
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 0.0e+00 1221.5 1098 62.6
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 0.0e+00 1216.4 1101 62.3
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 0.0e+00 1208.4 1102 63.0
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 0.0e+00 1207.2 1108 62.6
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1203.3 1110 61.8
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 0.0e+00 1199.9 1101 61.5
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 0.0e+00 1197.2 1102 61.1
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1192.6 1105 60.3
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 0.0e+00 1192.2 973 65.0
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 0.0e+00 1191.8 1100 61.5
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 0.0e+00 1191.0 1107 60.9
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 0.0e+00 1190.3 1108 60.5
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1187.9 1103 59.1
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1187.2 1109 59.8
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 0.0e+00 1186.4 1101 62.4
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1177.5 1100 61.9
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1177.2 1108 60.8
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 0.0e+00 1176.0 1108 58.8
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 0.0e+00 1174.5 1100 61.7
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 0.0e+00 1165.6 1101 59.9
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 0.0e+00 1164.8 1102 60.5
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 0.0e+00 1164.4 1047 63.8
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1159.1 1100 61.1
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 0.0e+00 1150.2 1095 59.4
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 0.0e+00 1150.2 1060 61.7
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 0.0e+00 1143.6 1079 60.0
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 0.0e+00 1137.5 1101 58.9
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 0.0e+00 1137.5 1098 58.2
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 0.0e+00 1128.6 1106 57.6
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 0.0e+00 1121.3 1106 57.6
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 0.0e+00 1114.4 1082 56.8
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 0.0e+00 1099.7 1099 57.4
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1095.5 1097 58.7
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1092.4 1096 57.3
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 0.0e+00 1081.2 1096 56.9
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1077.0 1099 55.3
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 3.0e-311 1072.0 1107 55.4
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 6.7e-311 1070.8 1206 52.1
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 1.9e-310 1069.3 978 58.7
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 2.5e-310 1068.9 1101 56.8
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 7.4e-310 1067.4 1096 56.3
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 1.2e-307 1060.1 1106 57.3
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 6.5e-306 1054.3 1123 57.1
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 1.1e-305 1053.5 1108 55.1
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 1.9e-305 1052.7 1112 57.1
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 2.7e-304 1048.9 1095 55.3
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 1.0e-303 1047.0 1096 56.7
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 1.0e-303 1047.0 1108 56.0
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 1.0e-303 1047.0 1108 55.7
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 2.3e-303 1045.8 1116 54.7
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 2.2e-301 1039.3 1078 58.0
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 6.5e-298 1027.7 1131 53.8
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 2.7e-296 1022.3 1000 55.0
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 2.2e-293 1012.7 1106 55.2
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 4.8e-293 1011.5 1106 55.3
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 1.5e-291 1006.5 1105 54.7
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 2.1e-288 996.1 1039 57.2
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 7.9e-288 994.2 1100 55.1
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 1.4e-284 983.4 1105 53.8
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 9.1e-284 980.7 1122 53.0
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 6.5e-282 974.5 1175 51.1
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 1.0e-279 967.2 1100 54.5
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 2.4e-276 956.1 1104 53.2
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 3.8e-274 948.7 1100 49.9
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 2.5e-273 946.0 1103 51.7
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 1.8e-271 939.9 1099 49.9
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 7.7e-267 924.5 1104 48.5
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 4.3e-249 865.5 1109 49.8
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 3.5e-219 766.1 1117 44.4
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 8.4e-213 745.0 716 57.5
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 1.9e-212 743.8 649 61.0
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 7.4e-209 731.9 595 65.7
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.2e-206 724.5 1115 42.0
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.2e-206 724.5 1115 42.0
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 7.1e-196 688.7 1139 40.4
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 1.9e-180 637.5 1005 38.0
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 1.0e-173 615.1 636 56.9
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 1.3e-168 598.2 501 61.9
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 3.8e-165 586.6 1079 35.1
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 1.6e-150 538.1 430 67.0
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.2e-128 464.5 429 58.5
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 1.8e-98 365.2 471 42.9
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 4.5e-97 360.5 835 30.4
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 4.3e-84 317.4 457 47.7
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 1.6e-83 315.5 448 47.8
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 7.1e-79 300.1 336 53.6
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 2.2e-75 288.5 407 47.2
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 1.8e-69 268.9 1004 26.0
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 6.7e-69 266.9 463 36.3
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 5.7e-68 263.8 288 52.1
PRCOL_00002040 Prasinoderma coloniale HOM05D005298 ORTHO05D008015 1.1e-66 259.6 722 28.4
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 2.6e-65 255.0 380 42.6
CSS0040584 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.5e-60 239.2 216 55.1
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 1.1e-50 206.5 655 28.2
Zm00001eb026980 Zea mays HOM05D005298 ORTHO05D008015 2.5e-47 195.3 154 64.9
GSVIVG01017598001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.4e-34 152.1 103 72.8
TPR.G8357 Trifolium pratense HOM05D005298 ORTHO05D008015 5.9e-33 147.5 253 42.7
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 5.0e-32 144.4 138 60.9
TPR.G15154 Trifolium pratense HOM05D005298 ORTHO05D008015 8.0e-30 137.1 212 43.4
AL3G29490 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 5.7e-28 131.0 162 48.1
Hma1.2p1_0079F.1_g041380 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 6.3e-27 127.5 91 68.1
SEGI_33872 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 1.0e-24 120.2 123 45.5
TPR.G35281 Trifolium pratense HOM05D005298 ORTHO05D008015 1.7e-24 119.4 130 51.5
ATR0457G001 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.6e-22 112.8 104 49.0
SEGI_24323 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 2.8e-22 112.1 96 58.3
Zm00001eb026970 Zea mays HOM05D005298 ORTHO05D008015 6.1e-22 110.9 115 50.4
CSS0028497 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D026321 1.8e-21 109.4 171 55.6
BcaB06g25819 Brassica carinata HOM05D005298 ORTHO05D008015 4.0e-21 108.2 224 52.2
GSVIVG01017600001 Vitis vinifera HOM05D005298 ORTHO05D008015 8.9e-21 107.1 102 53.9
ATR0757G088 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.2e-20 106.7 114 45.6
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 9.8e-20 103.6 111 54.1
MBI05_g29537_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 3.7e-19 101.7 160 42.5
ATR0605G314 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.7e-16 92.8 88 47.7
Zm00001eb183920 Zea mays HOM05D005298 ORTHO05D030733 3.0e-16 92.0 132 38.6
Zm00001eb082350 Zea mays HOM05D005298 ORTHO05D008015 5.0e-16 91.3 84 54.8
Zm00001eb187550 Zea mays HOM05D005298 ORTHO05D008015 5.0e-16 91.3 84 54.8
Zm00001eb385420 Zea mays HOM05D005298 ORTHO05D030733 2.8e-14 85.5 132 37.1
Aa31LG5G5320 Aethionema arabicum HOM05D002786 ORTHO05D003493 3.1e-13 82.0 651 21.0
ECA246G5341 Erigeron canadensis HOM05D002786 ORTHO05D003493 2.0e-12 79.3 658 22.0
HanXRQChr03g0062991 Helianthus annuus HOM05D002786 ORTHO05D003493 7.5e-12 77.4 659 21.9
HanXRQChr15g0471871 Helianthus annuus HOM05D002786 ORTHO05D003493 1.7e-11 76.3 656 21.3
FAN17G1115 Fragaria x ananassa HOM05D002786 ORTHO05D003493 6.4e-11 74.3 661 21.6
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 8.3e-11 73.9 48 68.8
ATR0049G027 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.9e-10 72.8 65 52.3
Os11g0693900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D026321 6.0e-09 67.8 188 42.6
MCO08G239 Micromonas commoda HOM05D002786 ORTHO05D003493 3.0e-08 65.5 426 23.0
CDE07G0250 Ceratophyllum demersum HOM05D002786 ORTHO05D003493 6.6e-08 64.3 353 21.8
CDE09G0536 Ceratophyllum demersum HOM05D005298 ORTHO05D043882 5.6e-07 61.2 92 37.0
ECA234G1297 Erigeron canadensis HOM05D002786 ORTHO05D003493 1.2e-06 60.1 658 20.7


User provided reference genes

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