Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 2097.4 1053 100.0
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1302.7 974 69.1
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1298.9 970 68.2
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1278.5 971 67.3
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1256.1 999 65.5
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1255.0 968 66.4
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1252.3 967 67.0
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1250.7 970 65.8
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1246.9 997 64.3
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1240.7 981 66.5
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1240.3 979 65.3
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1238.8 970 65.9
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1238.8 962 66.7
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1235.3 982 64.7
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1235.3 954 66.9
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1235.3 969 66.9
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1231.1 968 66.6
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1229.2 968 66.6
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1228.4 970 66.6
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1219.1 973 65.8
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1218.8 968 65.2
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1218.0 1017 64.0
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1216.8 985 65.4
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1215.3 969 65.8
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1213.0 985 64.0
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1211.8 974 64.6
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1211.1 970 63.9
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1208.4 968 64.3
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1207.2 983 64.3
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1199.5 954 64.9
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1196.8 929 65.3
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1194.1 984 64.5
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1189.9 1000 63.7
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1181.4 967 63.3
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 0.0e+00 1172.5 1065 60.3
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1169.8 1001 62.0
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1167.9 969 63.3
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1164.8 974 63.0
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1164.8 984 62.9
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1163.3 970 62.6
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1161.7 964 63.6
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1156.7 973 61.9
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1154.8 998 62.1
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1154.4 975 62.8
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1149.4 949 63.8
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1145.2 973 61.6
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1145.2 1014 61.0
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1144.8 1053 58.4
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1144.4 973 62.4
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1144.0 1015 61.1
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1143.6 961 62.6
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1142.9 989 60.8
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1142.9 974 62.0
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1142.5 971 60.4
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1142.1 977 61.9
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1142.1 974 62.7
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1140.9 971 61.2
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1140.2 967 61.7
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1137.5 1014 60.6
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1134.8 996 60.0
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1134.8 961 61.8
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1134.8 971 60.2
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1134.4 974 61.0
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1132.9 1049 59.6
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1131.7 986 60.5
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1130.9 1002 60.3
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1129.4 975 60.3
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1125.5 975 60.2
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1125.5 975 60.2
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1125.2 972 60.6
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1125.2 977 60.3
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1124.4 971 59.8
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1121.7 972 59.8
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1119.4 908 65.6
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1110.9 989 59.2
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1108.2 981 59.9
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1104.4 972 59.8
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1104.4 972 59.8
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1102.4 973 59.7
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1098.6 1030 57.9
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1095.9 971 59.3
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1095.1 1031 57.2
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1093.2 979 59.9
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1093.2 968 58.9
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 0.0e+00 1092.4 1062 55.9
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1088.6 1014 57.6
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1084.3 858 65.0
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 0.0e+00 1084.3 969 60.3
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1078.2 1096 55.0
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1077.0 1006 57.1
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 7.2e-312 1073.5 964 58.7
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.4e-310 1069.7 944 60.6
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 8.7e-308 1060.4 975 56.9
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 2.8e-306 1055.4 892 62.9
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 6.2e-306 1054.3 984 56.3
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 2.4e-305 1052.4 998 55.9
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 5.8e-304 1047.7 964 57.2
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 1.8e-300 1036.2 947 59.3
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 3.9e-300 1035.0 950 58.9
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 1.1e-299 1033.5 967 57.7
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 1.5e-299 1033.1 895 61.3
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 2.9e-295 1018.8 962 56.3
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 1.4e-294 1016.5 961 56.5
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.6e-293 1013.1 896 59.9
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 2.1e-293 1012.7 989 55.6
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 3.5e-293 1011.9 992 55.8
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 1.1e-289 1000.3 992 54.5
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 9.0e-289 997.3 1078 52.5
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 1.5e-288 996.5 1212 48.8
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 2.1e-285 986.1 1008 53.7
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 6.7e-284 981.1 832 61.4
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 1.1e-267 927.2 811 61.0
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 1.0e-255 887.5 985 51.6
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 1.4e-252 877.1 805 57.5
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 1.8e-252 876.7 986 49.2
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 2.3e-252 876.3 983 50.9
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.3e-250 870.5 720 65.7
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 7.0e-241 838.2 917 49.8
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 2.3e-239 833.2 891 50.6
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 3.3e-238 829.3 1113 43.4
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 7.3e-214 748.4 749 54.5
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 9.3e-201 704.9 675 56.1
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 5.3e-196 689.1 660 56.4
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.9e-193 680.6 709 55.7
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 5.3e-188 662.5 411 78.3
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 1.2e-184 651.4 794 48.4
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.3e-158 563.5 382 74.6
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.4e-156 557.4 428 67.5
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 2.9e-154 550.4 402 69.9
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 1.5e-145 521.5 512 56.1
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.5e-137 495.0 748 42.6
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 1.1e-132 478.8 668 44.3
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 3.2e-124 450.7 586 46.4
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.5e-121 441.0 478 53.1
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 1.7e-117 428.3 283 74.2
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.9e-116 424.9 314 67.8
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 5.6e-113 413.3 302 67.9
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.9e-105 388.3 325 59.7
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 4.7e-96 357.1 344 54.1
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 1.3e-90 339.0 208 78.8
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 7.2e-60 236.9 157 73.9
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 6.1e-51 207.2 143 72.0
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 7.4e-49 200.3 139 66.2
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 2.2e-48 198.7 210 49.5
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 2.9e-45 188.3 133 69.2
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.7e-35 155.2 309 36.9
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 3.3e-33 148.3 162 47.5
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.0e-30 139.0 94 71.3
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 5.0e-29 134.4 115 56.5
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 6.5e-29 134.0 76 81.6
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 1.7e-21 109.4 160 40.6
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.2e-19 103.2 86 58.1
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 5.7e-17 94.4 66 71.2
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.7e-14 85.5 121 41.3
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 3.5e-14 85.1 47 87.2
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 7.8e-14 84.0 96 50.0
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 3.8e-13 81.6 61 63.9
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 6.6e-13 80.9 144 36.1
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 5.2e-10 71.2 140 32.1
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 1.2e-09 70.1 52 61.5
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 1.2e-09 70.1 52 61.5
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 4.4e-09 68.2 61 50.8
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 5.7e-09 67.8 52 59.6
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 9.8e-09 67.0 62 53.2
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 8.3e-08 63.9 68 48.5
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 7.0e-07 60.8 52 57.7
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.2e-06 60.1 69 44.9
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 1.6e-06 59.7 48 54.2


User provided reference genes

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