Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 1.3e-296 1022.7 686 100.0
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 2.8e-89 334.0 762 44.5
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 3.7e-89 333.6 789 45.4
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 4.9e-86 323.2 708 41.5
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 1.1e-85 322.0 792 43.1
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 1.9e-85 321.2 748 42.6
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 3.2e-85 320.5 737 45.2
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 4.2e-85 320.1 767 42.8
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 9.3e-85 318.9 773 46.6
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 1.6e-84 318.2 690 43.2
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.6e-84 318.2 798 44.2
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.5e-84 317.0 728 43.1
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.5e-84 317.0 728 43.1
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 7.9e-84 315.8 767 44.1
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 1.3e-83 315.1 778 48.2
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.3e-83 315.1 618 45.8
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 2.3e-83 314.3 705 41.1
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 3.0e-83 313.9 723 41.8
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 3.9e-83 313.5 630 45.2
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 3.9e-83 313.5 784 42.3
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 6.7e-83 312.8 776 45.5
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 1.1e-82 312.0 764 42.4
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 1.9e-82 311.2 621 45.6
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 7.4e-82 309.3 639 42.3
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 7.4e-82 309.3 728 46.7
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 3.7e-81 307.0 764 45.9
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 4.8e-81 306.6 756 45.6
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.8e-80 304.7 758 44.5
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.4e-79 300.4 719 40.8
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 7.6e-79 299.3 726 40.9
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 5.0e-78 296.6 772 44.9
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 1.9e-77 294.7 776 43.0
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 2.5e-77 294.3 753 40.5
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 4.2e-77 293.5 757 40.3
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 4.6e-76 290.0 652 48.0
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 1.0e-75 288.9 762 42.7
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 1.0e-75 288.9 758 40.8
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 6.7e-75 286.2 761 40.6
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 8.8e-75 285.8 749 43.7
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 3.7e-73 280.4 738 41.2
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 2.4e-72 277.7 661 42.1
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.0e-71 274.6 615 43.9
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 7.7e-71 272.7 785 37.7
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 1.7e-70 271.6 729 42.7
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.1e-68 264.6 696 40.8
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 2.7e-68 264.2 691 39.8
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 3.6e-68 263.8 633 42.3
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 4.7e-68 263.5 668 43.9
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.3e-67 261.2 748 38.1
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 6.7e-67 259.6 643 42.5
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 1.1e-66 258.8 768 42.3
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 2.2e-65 254.6 725 42.8
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 4.8e-65 253.4 762 40.7
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 1.5e-63 248.4 693 46.8
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 3.4e-63 247.3 632 39.7
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.3e-62 245.4 688 39.8
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 4.2e-61 240.4 740 42.0
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 4.2e-61 240.4 700 47.6
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 7.2e-61 239.6 713 43.3
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 9.4e-61 239.2 629 40.4
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 1.6e-60 238.4 716 46.1
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 2.1e-60 238.0 616 37.2
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 2.7e-60 237.7 699 41.8
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 3.6e-60 237.3 764 36.1
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 4.7e-60 236.9 770 41.0
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 6.7e-59 233.0 690 39.7
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 8.8e-59 232.6 604 41.6
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.1e-58 232.3 738 44.7
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 3.3e-58 230.7 707 43.4
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 1.7e-57 228.4 705 38.0
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 1.1e-56 225.7 729 40.2
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.4e-56 225.3 707 40.0
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 1.6e-55 221.9 665 44.1
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 2.0e-55 221.5 519 44.9
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 2.6e-55 221.1 738 41.7
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 3.5e-55 220.7 712 35.8
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 7.7e-55 219.5 726 36.2
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.2e-54 218.0 776 39.3
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 3.8e-54 217.2 519 40.3
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 5.0e-54 216.9 724 43.2
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.1e-53 215.7 537 47.1
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.2e-53 213.8 731 43.6
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 9.4e-53 212.6 658 36.5
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 2.7e-52 211.1 648 41.5
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.0e-51 209.1 737 40.6
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 2.0e-50 204.9 633 36.2
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 4.4e-50 203.8 331 49.2
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 7.5e-50 203.0 738 43.6
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 9.7e-50 202.6 693 35.6
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.3e-49 202.2 419 42.2
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 6.3e-49 199.9 705 44.0
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 6.3e-49 199.9 698 43.3
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 2.4e-48 198.0 706 42.9
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 7.0e-48 196.4 682 39.4
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 9.1e-48 196.1 638 39.3
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 2.5e-45 188.0 729 36.5
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 3.2e-45 187.6 656 42.1
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 9.4e-45 186.0 724 31.6
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.2e-44 185.7 630 38.4
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 1.2e-44 185.7 579 35.8
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 3.6e-44 184.1 798 36.8
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 1.0e-43 182.6 439 49.9
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 5.2e-43 180.3 607 33.1
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 6.8e-43 179.9 759 32.9
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 8.8e-43 179.5 660 37.4
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 3.4e-42 177.6 669 33.2
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 5.7e-42 176.8 693 41.8
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 2.2e-41 174.9 634 39.7
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 6.3e-41 173.3 466 43.3
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 1.1e-40 172.6 676 42.8
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 1.1e-40 172.6 594 35.2
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.4e-40 172.2 580 38.1
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 3.1e-40 171.0 609 37.9
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.2e-39 169.1 609 33.5
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.6e-39 168.7 595 36.3
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 5.9e-39 166.8 697 31.0
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.0e-38 166.0 590 37.6
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 5.0e-38 163.7 304 47.0
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 8.6e-38 162.9 605 37.4
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.5e-37 162.2 620 31.9
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 1.9e-37 161.8 577 36.4
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 3.3e-37 161.0 609 31.5
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.8e-36 157.9 592 38.9
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 6.8e-35 153.3 378 39.2
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 6.3e-33 146.7 608 31.9
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 7.0e-32 143.3 454 35.2
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 7.0e-32 143.3 639 30.8
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 9.2e-32 142.9 618 32.4
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 1.6e-31 142.1 305 41.6
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 7.8e-31 139.8 439 48.5
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 1.7e-30 138.7 383 46.5
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 6.6e-30 136.7 709 34.8
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 6.6e-30 136.7 535 33.5
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 3.6e-28 131.0 617 31.0
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 8.0e-28 129.8 482 32.0
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 1.0e-27 129.4 620 31.1
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.2e-26 125.9 665 29.3
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 4.9e-25 120.6 560 32.1
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 5.4e-24 117.1 270 38.5
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 6.0e-23 113.6 624 28.5
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 1.0e-22 112.8 464 34.1
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.5e-21 109.0 249 36.9
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 1.6e-20 105.5 464 40.9
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 2.3e-19 101.7 462 35.5
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 1.2e-18 99.4 467 34.3
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 1.2e-18 99.4 467 34.3
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 5.8e-18 97.1 466 35.6
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.7e-17 95.5 227 37.9
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 6.4e-17 93.6 553 36.9
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 9.2e-16 89.7 542 27.5
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 6.0e-15 87.0 115 49.6
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.0e-14 86.3 168 46.4
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.7e-14 85.5 570 27.9
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 3.9e-14 84.3 295 34.6
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 2.1e-12 78.6 691 30.5
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.6e-12 77.8 586 30.0
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.4e-11 75.9 87 55.2
ATR0124G054 Amborella trichopoda HOM05D003795 ORTHO05D004308 3.1e-11 74.7 485 34.2
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 2.0e-10 72.0 317 34.4
Psat7g004680 Pisum sativum HOM05D003795 ORTHO05D004308 3.7e-09 67.8 86 62.8
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.9e-08 65.5 220 31.4
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 1.9e-08 65.5 101 52.5
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.2e-07 62.8 199 31.7
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 2.1e-07 62.0 101 50.5
Psat3g059240 Pisum sativum HOM05D003795 ORTHO05D004308 6.0e-07 60.5 109 50.5
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.7e-06 58.9 258 29.5
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 3.0e-06 58.2 406 28.8


User provided reference genes

Program Settings