Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0973 Cannabis sativa HOM05D001718 ORTHO05D007949 4.4e-89 331.3 165 100.0
Atru.chr1.1027 Acer truncatum HOM05D001718 ORTHO05D007949 5.8e-57 224.6 126 86.5
ClCG04G000670 Citrullus lanatus HOM05D001718 ORTHO05D007949 5.8e-57 224.6 126 86.5
arahy.Tifrunner.gnm1.ann1.5NB5PV Arachis hypogaea HOM05D001718 ORTHO05D007949 2.2e-56 222.6 125 85.6
arahy.Tifrunner.gnm1.ann1.Q9AIC8 Arachis hypogaea HOM05D001718 ORTHO05D007949 2.2e-56 222.6 125 85.6
CiPaw.09G034600 Carya illinoinensis HOM05D001718 ORTHO05D007949 3.7e-56 221.9 126 85.7
MELO3C009027.2 Cucumis melo HOM05D001718 ORTHO05D007949 3.7e-56 221.9 126 85.7
COL.COLO4_28683 Corchorus olitorius HOM05D001718 ORTHO05D007949 8.3e-56 220.7 126 86.5
Prupe.7G068000 Prunus persica HOM05D001718 ORTHO05D007949 1.1e-55 220.3 163 70.6
Glyma.10G094900 Glycine max HOM05D001718 ORTHO05D007949 1.9e-55 219.5 126 84.9
Potri.006G055400 Populus trichocarpa HOM05D001718 ORTHO05D007949 1.9e-55 219.5 125 84.8
Manes.09G029500 Manihot esculenta HOM05D001718 ORTHO05D007949 2.4e-55 219.2 125 85.6
Haze_19914 Corylus avellana HOM05D001718 ORTHO05D007949 3.2e-55 218.8 126 84.9
Duzib093G0858 Durio zibethinus HOM05D001718 ORTHO05D007949 3.2e-55 218.8 126 85.7
Lj5g0011485 Lotus japonicus HOM05D001718 ORTHO05D007949 3.2e-55 218.8 126 83.3
Nitab4.5_0000452g0010 Nicotiana tabacum HOM05D001718 ORTHO05D007949 4.1e-55 218.4 128 81.2
Nitab4.5_0002861g0040 Nicotiana tabacum HOM05D001718 ORTHO05D007949 4.1e-55 218.4 128 81.2
TPR.G22782 Trifolium pratense HOM05D001718 ORTHO05D007949 4.1e-55 218.4 125 84.0
GSVIVG01033332001 Vitis vinifera HOM05D001718 ORTHO05D007949 4.1e-55 218.4 125 83.2
Cpa.g.sc85.132 Carica papaya HOM05D001718 ORTHO05D007949 5.4e-55 218.0 126 83.3
Ciclev10004757m.g Citrus clementina HOM05D001718 ORTHO05D007949 5.4e-55 218.0 126 84.9
TAR633G2084 Trochodendron aralioides HOM05D001718 ORTHO05D007949 5.4e-55 218.0 130 81.5
Cfa016868 Carpinus fangiana HOM05D001718 ORTHO05D007949 7.0e-55 217.6 126 84.1
Gohir.D01G186400 Gossypium hirsutum HOM05D001718 ORTHO05D007949 7.0e-55 217.6 126 85.7
Gorai.002G229800 Gossypium raimondii HOM05D001718 ORTHO05D007949 7.0e-55 217.6 126 85.7
Sabra06G0039300 Salix brachista HOM05D001718 ORTHO05D007949 7.0e-55 217.6 126 84.1
Gohir.A01G196000 Gossypium hirsutum HOM05D001718 ORTHO05D007949 9.2e-55 217.2 126 84.9
Nn2g15432 Nelumbo nucifera HOM05D001718 ORTHO05D007949 9.2e-55 217.2 126 81.7
BraA09t40507Z Brassica rapa HOM05D001718 ORTHO05D007949 1.2e-54 216.9 161 68.9
Medtr1g052135 Medicago truncatula HOM05D001718 ORTHO05D007949 1.2e-54 216.9 125 83.2
Actinidia09361 Actinidia chinensis HOM05D001718 ORTHO05D007949 1.6e-54 216.5 128 82.8
AT3G57680 Arabidopsis thaliana HOM05D001718 ORTHO05D007949 1.6e-54 216.5 139 74.8
Duzib106G1478 Durio zibethinus HOM05D001718 ORTHO05D007949 1.6e-54 216.5 127 83.5
Sp5g04950 Schrenkiella parvula HOM05D001718 ORTHO05D007949 1.6e-54 216.5 123 83.7
BcaC07g40353 Brassica carinata HOM05D001718 ORTHO05D007949 2.7e-54 215.7 161 68.9
A09p50530 Brassica napus HOM05D001718 ORTHO05D007949 2.7e-54 215.7 161 68.9
C08p33260 Brassica napus HOM05D001718 ORTHO05D007949 2.7e-54 215.7 161 68.9
BolC8t50928H Brassica oleracea HOM05D001718 ORTHO05D007949 2.7e-54 215.7 161 68.9
CSS0042564 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D007949 2.7e-54 215.7 129 82.2
CAN.G115.8 Capsicum annuum HOM05D001718 ORTHO05D007949 3.5e-54 215.3 140 74.3
MBI01_g27617_MAGBIO Magnolia biondii HOM05D001718 ORTHO05D007949 3.5e-54 215.3 125 81.6
VMungo0720G1950 Vigna mungo HOM05D001718 ORTHO05D007949 3.5e-54 215.3 128 85.9
CsaV3_4G031400 Cucumis sativus L. HOM05D001718 ORTHO05D007949 4.6e-54 214.9 133 81.2
Phvul.007G255600 Phaseolus vulgaris HOM05D001718 ORTHO05D007949 4.6e-54 214.9 126 84.9
Sc13g0001990 Simmondsia chinensis HOM05D001718 ORTHO05D007949 6.0e-54 214.5 126 81.0
FvH4_6g23140 Fragaria vesca HOM05D001718 ORTHO05D007949 1.0e-53 213.8 126 83.3
Lj2A378G22 Lonicera japonica HOM05D001718 ORTHO05D007949 1.3e-53 213.4 125 84.8
Sed0001386 Sechium edule HOM05D001718 ORTHO05D007949 1.3e-53 213.4 127 83.5
TWI74G0848 Tripterygium wilfordii HOM05D001718 ORTHO05D007949 1.3e-53 213.4 127 84.3
vmacro07869 Vaccinium macrocarpon HOM05D001718 ORTHO05D007949 1.3e-53 213.4 127 82.7
Psat6g123600 Pisum sativum HOM05D001718 ORTHO05D007949 1.7e-53 213.0 117 86.3
THA.LOC104819007 Tarenaya hassleriana HOM05D001718 ORTHO05D007949 1.7e-53 213.0 127 81.1
Thecc.05G163200 Theobroma cacao HOM05D001718 ORTHO05D007949 1.7e-53 213.0 126 82.5
FAN14G2301 Fragaria x ananassa HOM05D001718 ORTHO05D007949 2.3e-53 212.6 126 82.5
Rhsim03G0012100 Rhododendron simsii HOM05D001718 ORTHO05D007949 2.3e-53 212.6 127 82.7
RcHm_v2.0_Chr3g0480991 Rosa chinensis HOM05D001718 ORTHO05D007949 2.3e-53 212.6 126 82.5
Migut.J01789 Erythranthe guttata HOM05D001718 ORTHO05D007949 3.0e-53 212.2 126 82.5
FAN02G1268 Fragaria x ananassa HOM05D001718 ORTHO05D007949 3.0e-53 212.2 126 82.5
QL07p021843 Quercus lobata HOM05D001718 ORTHO05D007949 3.9e-53 211.8 126 82.5
EL10Ac3g07007 Beta vulgaris HOM05D001718 ORTHO05D007949 6.6e-53 211.1 119 83.2
BcaC07g40148 Brassica carinata HOM05D001718 ORTHO05D007949 6.6e-53 211.1 161 67.1
Carub.0005s2451 Capsella rubella HOM05D001718 ORTHO05D007949 8.6e-53 210.7 120 84.2
CARHR167880 Cardamine hirsuta HOM05D001718 ORTHO05D007949 1.5e-52 209.9 139 74.8
Ca_10140_v3 Cicer arietinum L. HOM05D001718 ORTHO05D007949 1.5e-52 209.9 116 87.1
Dinv24121 Davidia involucrata HOM05D001718 ORTHO05D007949 1.5e-52 209.9 127 80.3
AL5G39300 Arabidopsis lyrata HOM05D001718 ORTHO05D007949 2.5e-52 209.1 139 73.4
Aqoxy1G00219 Aquilegia oxysepala HOM05D001718 ORTHO05D007949 3.3e-52 208.8 126 79.4
Thhalv10005897m.g Eutrema salsugineum HOM05D001718 ORTHO05D007949 5.6e-52 208.0 139 74.1
Solyc03g059260.4 Solanum lycopersicum HOM05D001718 ORTHO05D007949 5.6e-52 208.0 124 80.6
Sopen03g013610 Solanum pennellii HOM05D001718 ORTHO05D007949 5.6e-52 208.0 124 80.6
Hund24747 Selenicereus undatus HOM05D001718 ORTHO05D007949 7.3e-52 207.6 127 78.7
SGA_v2.0_scaffold105G30454 Striga asiatica HOM05D001718 ORTHO05D007949 1.6e-51 206.5 126 78.6
PGSC0003DMG400033928 Solanum tuberosum HOM05D001718 ORTHO05D007949 2.1e-51 206.1 124 79.8
SalBow6G4514 Salvia bowleyana HOM05D001718 ORTHO05D007949 2.8e-51 205.7 126 78.6
Eucgr.A02402 Eucalyptus grandis HOM05D001718 ORTHO05D007949 8.1e-51 204.1 128 79.7
PGR004G2457 Punica granatum HOM05D001718 ORTHO05D007949 1.1e-50 203.8 126 78.6
DCAR_013578 Daucus carota HOM05D001718 ORTHO05D007949 1.4e-50 203.4 126 79.4
HanXRQChr05g0132201 Helianthus annuus HOM05D001718 ORTHO05D007949 1.4e-50 203.4 128 75.8
MD14G1066000 Malus domestica HOM05D001718 ORTHO05D007949 1.4e-50 203.4 122 79.5
Lsat_1_v5_gn_8_80041 Lactuca sativa HOM05D001718 ORTHO05D007949 1.8e-50 203.0 128 76.6
ATR0605G274 Amborella trichopoda HOM05D001718 ORTHO05D007949 4.0e-50 201.8 130 76.2
AUR62024389 Chenopodium quinoa HOM05D001718 ORTHO05D007949 4.0e-50 201.8 119 77.3
Cc06_g16540 Coffea canephora HOM05D001718 ORTHO05D007949 4.0e-50 201.8 127 76.4
AUR62025984 Chenopodium quinoa HOM05D001718 ORTHO05D007949 8.9e-50 200.7 119 77.3
MD12G1066100 Malus domestica HOM05D001718 ORTHO05D007949 8.9e-50 200.7 122 79.5
HPP92_022797 Vanilla planifolia HOM05D001718 ORTHO05D007949 8.9e-50 200.7 120 77.5
PSO384G3132 Papaver somniferum HOM05D001718 ORTHO05D007949 2.0e-49 199.5 118 81.4
MSTRG.6454 Avicennia marina HOM05D001718 ORTHO05D007949 2.6e-49 199.1 125 77.6
Zm00001eb381590 Zea mays HOM05D001718 ORTHO05D007949 7.5e-49 197.6 116 81.9
Os06g0318600 Oryza sativa ssp. japonica HOM05D001718 ORTHO05D007949 2.9e-48 195.7 116 80.2
SEGI_38104 Sequoiadendron giganteum HOM05D001718 ORTHO05D007949 6.0e-46 188.0 115 79.1
Lsat_1_v5_gn_9_49740 Lactuca sativa HOM05D001718 ORTHO05D007949 7.8e-46 187.6 128 71.9
Migut.K01152 Erythranthe guttata HOM05D001718 ORTHO05D007949 1.5e-44 183.3 137 70.1
Peaxi162Scf00189g00041 Petunia axillaris HOM05D001718 ORTHO05D007949 8.9e-42 174.1 128 68.0
Lsat_1_v5_gn_2_4801 Lactuca sativa HOM05D001718 ORTHO05D007949 3.9e-37 158.7 105 69.5
Pp3c12_26230 Physcomitrium patens HOM05D001718 ORTHO05D007949 1.4e-34 150.2 115 58.3
Mapoly0039s0084 Marchantia polymorpha HOM05D001718 ORTHO05D007949 2.0e-33 146.4 118 57.6
Lsat_1_v5_gn_3_85020 Lactuca sativa HOM05D001718 ORTHO05D007949 4.9e-32 141.7 128 57.8
BraA09t40514Z Brassica rapa HOM05D001718 ORTHO05D021731 1.4e-31 140.2 111 66.7
Lsat_1_v5_gn_3_116660 Lactuca sativa HOM05D001718 ORTHO05D007949 3.2e-31 139.0 99 70.7
Migut.B01592 Erythranthe guttata HOM05D001718 ORTHO05D007949 5.4e-31 138.3 126 58.7
BcaC07g40350 Brassica carinata HOM05D001718 ORTHO05D021731 9.3e-31 137.5 112 65.2
C06p15110 Brassica napus HOM05D001718 ORTHO05D007949 2.8e-27 125.9 73 80.8
C08p33280 Brassica napus HOM05D001718 ORTHO05D021731 4.8e-27 125.2 111 61.3
Cre10.g453807 Chlamydomonas reinhardtii HOM05D001718 ORTHO05D007949 4.0e-26 122.1 118 47.5
A09p50660 Brassica napus HOM05D001718 ORTHO05D021731 9.9e-25 117.5 111 60.4
SMO200G0188 Selaginella moellendorffii HOM05D001718 ORTHO05D007949 9.9e-25 117.5 99 49.5
AagrBONN_evm.TU.Sc2ySwM_344.2287 Anthoceros agrestis HOM05D001718 ORTHO05D007949 1.1e-23 114.0 134 41.8
A09p21500 Brassica napus HOM05D001317 ORTHO05D001164 1.6e-22 110.2 65 81.5
BraA09t37749Z Brassica rapa HOM05D001317 ORTHO05D001164 1.6e-22 110.2 65 81.5
Oeu004010.1 Olea europaea HOM05D001718 ORTHO05D007949 1.6e-22 110.2 63 81.0
Migut.L00558 Erythranthe guttata HOM05D001718 ORTHO05D007949 3.5e-22 109.0 63 82.5
Oeu004009.1 Olea europaea HOM05D001718 ORTHO05D021731 2.9e-16 89.4 51 82.4
Cre10.g426050 Chlamydomonas reinhardtii HOM05D001718 ORTHO05D007949 6.4e-16 88.2 82 45.1
Lsat_1_v5_gn_7_80600 Lactuca sativa HOM05D001718 ORTHO05D231826 1.5e-12 77.0 133 42.1
CSS0018370 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D008006 4.3e-12 75.5 105 36.2
CSS0019444 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D008006 4.3e-12 75.5 105 36.2
CSS0026405 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D008006 2.8e-11 72.8 105 35.2
SGA_v2.0_scaffold142G35679 Striga asiatica HOM05D001718 ORTHO05D008006 1.8e-10 70.1 139 30.2
Prupe.1G052500 Prunus persica HOM05D001718 ORTHO05D008006 3.1e-10 69.3 105 35.2
MD13G1225700 Malus domestica HOM05D001718 ORTHO05D008006 5.3e-10 68.6 128 31.2
ATR0723G067 Amborella trichopoda HOM05D001718 ORTHO05D008006 9.0e-10 67.8 105 34.3
PRCOL_00005579 Prasinoderma coloniale HOM05D001718 ORTHO05D007949 1.2e-09 67.4 118 33.9
PRCOL_00005268 Prasinoderma coloniale HOM05D001718 ORTHO05D007949 1.5e-09 67.0 106 34.0
Rhsim03G0025400 Rhododendron simsii HOM05D036651 ORTHO05D007949 2.0e-09 66.6 93 47.3
SalBow2G0821 Salvia bowleyana HOM05D001718 ORTHO05D008006 2.9e-08 62.8 112 32.1
MCO05G268 Micromonas commoda HOM05D001718 ORTHO05D008006 3.8e-08 62.4 82 37.8
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 1.2e-06 57.4 38 73.7
PRCOL_00002285 Prasinoderma coloniale HOM05D001718 ORTHO05D008006 1.2e-06 57.4 84 34.5
CBR_g38981 Chara braunii HOM05D001718 ORTHO05D009127 1.6e-06 57.0 109 33.0
Phvul.002G245300 Phaseolus vulgaris HOM05D001718 ORTHO05D009127 3.5e-06 55.8 102 30.4
Rhsim03G0026700 Rhododendron simsii HOM05D001718 ORTHO05D007949 3.5e-06 55.8 44 61.4
BolC3t17245H Brassica oleracea HOM05D001718 ORTHO05D021731 4.6e-06 55.5 35 77.1
Mapoly0051s0032 Marchantia polymorpha HOM05D001718 ORTHO05D009127 4.6e-06 55.5 113 31.0
RhsimUnG0054400 Rhododendron simsii HOM05D001718 ORTHO05D001994 4.6e-06 55.5 41 68.3
Psat7g065680 Pisum sativum HOM05D001718 ORTHO05D009127 6.0e-06 55.1 124 30.6
Rhsim03G0031900 Rhododendron simsii HOM05D001718 ORTHO05D007949 6.0e-06 55.1 46 58.7
Pp3c16_16750 Physcomitrium patens HOM05D001718 ORTHO05D009127 7.9e-06 54.7 108 30.6


User provided reference genes

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