Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 8.0e-98 360.5 196 100.0
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 4.6e-37 158.7 195 53.3
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 6.7e-36 154.8 193 52.3
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 3.3e-35 152.5 198 51.0
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 1.3e-34 150.6 194 51.5
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 3.7e-34 149.1 194 50.0
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.8e-33 146.7 176 53.4
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.2e-32 144.1 176 52.8
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 2.6e-32 142.9 207 49.3
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 4.5e-32 142.1 203 49.8
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 5.8e-32 141.7 196 48.0
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.3e-31 140.6 176 51.7
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 1.3e-31 140.6 199 46.7
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 2.2e-31 139.8 199 46.2
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 4.9e-31 138.7 177 51.4
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 1.1e-30 137.5 203 45.8
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.1e-30 137.5 207 48.3
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.2e-29 134.0 194 49.0
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 1.2e-29 134.0 199 45.2
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 3.3e-27 125.9 189 45.5
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 2.8e-26 122.9 196 41.8
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 2.8e-26 122.9 188 46.3
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 8.2e-26 121.3 191 42.9
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 5.3e-25 118.6 186 43.5
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 5.3e-25 118.6 176 45.5
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 5.3e-25 118.6 172 44.2
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 6.9e-25 118.2 145 53.1
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 9.0e-25 117.9 191 41.9
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 9.0e-25 117.9 188 44.1
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 9.0e-25 117.9 170 48.8
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 1.5e-24 117.1 193 47.2
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 2.0e-24 116.7 189 41.8
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.4e-24 115.9 187 44.4
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 3.4e-24 115.9 187 44.4
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 3.4e-24 115.9 179 44.7
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 1.7e-23 113.6 179 42.5
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 2.9e-23 112.8 193 44.6
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 1.4e-22 110.5 179 44.1
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 3.2e-22 109.4 190 43.2
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 4.2e-22 109.0 190 42.6
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 4.2e-22 109.0 175 44.0
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 7.1e-22 108.2 180 40.0
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 7.1e-22 108.2 193 41.5
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 9.3e-22 107.8 171 42.7
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 9.3e-22 107.8 192 42.7
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 1.6e-21 107.1 201 43.8
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 2.1e-21 106.7 175 42.3
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 2.7e-21 106.3 191 40.3
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 4.6e-21 105.5 189 40.7
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 4.6e-21 105.5 204 41.7
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 7.9e-21 104.8 210 40.5
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 7.9e-21 104.8 210 40.5
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 1.0e-20 104.4 193 41.5
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 1.3e-20 104.0 212 40.1
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 1.8e-20 103.6 213 41.3
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.8e-20 103.6 185 40.0
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 2.3e-20 103.2 192 39.6
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 2.3e-20 103.2 189 40.7
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 3.9e-20 102.4 190 40.0
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.9e-20 102.4 185 39.5
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 5.1e-20 102.1 191 39.3
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 8.7e-20 101.3 201 41.3
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 1.1e-19 100.9 193 38.9
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 1.9e-19 100.1 178 39.3
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.9e-19 100.1 192 39.1
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 3.3e-19 99.4 194 39.7
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 4.3e-19 99.0 193 39.4
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 9.7e-19 97.8 192 39.6
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 1.3e-18 97.4 191 39.8
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 1.3e-18 97.4 179 39.7
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 2.2e-18 96.7 152 44.7
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 3.7e-18 95.9 192 43.2
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 4.8e-18 95.5 183 41.5
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 4.8e-18 95.5 193 37.8
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 6.3e-18 95.1 190 42.6
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 8.2e-18 94.7 211 37.4
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 4.1e-17 92.4 175 39.4
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 5.3e-17 92.0 190 37.4
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 5.3e-17 92.0 186 39.2
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 5.3e-17 92.0 186 39.2
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 6.9e-17 91.7 212 40.1
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 9.0e-17 91.3 176 38.1
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 9.0e-17 91.3 165 43.0
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 1.2e-16 90.9 201 36.8
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.2e-16 90.9 207 40.1
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 2.0e-16 90.1 209 37.3
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 2.0e-16 90.1 194 37.1
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 2.0e-16 90.1 82 61.0
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 4.5e-16 89.0 168 38.1
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 5.9e-16 88.6 173 37.6
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 7.7e-16 88.2 207 36.7
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.7e-15 87.0 204 35.8
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 2.9e-15 86.3 194 37.1
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.9e-15 86.3 209 34.9
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 3.8e-15 85.9 196 37.2
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 3.8e-15 85.9 210 36.2
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 3.8e-15 85.9 211 34.6
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 5.0e-15 85.5 89 55.1
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 6.5e-15 85.1 208 35.1
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 6.5e-15 85.1 78 59.0
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 8.5e-15 84.7 206 37.4
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.4e-14 84.0 74 63.5
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 3.2e-14 82.8 198 38.4
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 5.5e-14 82.0 197 36.0
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 5.5e-14 82.0 162 36.4
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 5.5e-14 82.0 196 35.7
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 7.2e-14 81.6 77 57.1
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 7.2e-14 81.6 203 34.5
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 7.2e-14 81.6 224 37.9
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 9.4e-14 81.3 104 49.0
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 9.4e-14 81.3 221 36.7
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 1.6e-13 80.5 62 64.5
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.6e-13 80.5 197 35.0
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 3.6e-13 79.3 212 38.2
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 3.6e-13 79.3 75 56.0
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 4.6e-13 79.0 168 36.3
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 4.6e-13 79.0 214 36.0
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 6.1e-13 78.6 59 66.1
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 7.9e-13 78.2 203 34.0
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.0e-12 77.8 197 32.0
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 1.8e-12 77.0 205 34.6
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 3.0e-12 76.3 217 34.6
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 5.1e-12 75.5 208 35.6
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.1e-11 74.3 83 49.4
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 1.5e-11 73.9 187 33.2
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.0e-11 73.6 68 55.9
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 2.5e-11 73.2 218 34.9
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 4.3e-11 72.4 207 36.2
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 9.7e-11 71.2 206 35.4
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 2.2e-10 70.1 87 49.4
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 2.8e-10 69.7 195 34.4
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 3.7e-10 69.3 75 49.3
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 8.2e-10 68.2 182 37.4
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 1.1e-09 67.8 81 48.1
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 1.4e-09 67.4 193 35.8
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 1.4e-09 67.4 192 34.4
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 1.8e-09 67.0 103 42.7
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 1.8e-09 67.0 83 48.2
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 4.1e-09 65.9 198 34.8
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 9.1e-09 64.7 198 31.3
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.2e-08 64.3 209 33.0
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 2.0e-08 63.5 163 34.4
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 2.0e-08 63.5 185 31.9
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 5.9e-08 62.0 56 55.4
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 5.0e-07 58.9 69 46.4
Lj5C23T4 Lonicera japonica HOM05D004654 ORTHO05D005414 8.5e-07 58.2 84 42.9
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 2.5e-06 56.6 63 55.6
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 2.5e-06 56.6 185 29.2
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 2.5e-06 56.6 194 29.4


User provided reference genes

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