Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 9.0e-190 666.8 338 100.0
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 3.0e-177 625.2 338 92.6
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 3.3e-176 621.7 338 91.7
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 9.6e-176 620.2 338 91.4
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 6.3e-175 617.5 333 92.2
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 8.2e-175 617.1 338 90.5
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.1e-174 616.7 338 90.5
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 1.4e-174 616.3 338 90.8
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 1.4e-174 616.3 338 91.1
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.8e-174 615.9 333 91.9
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 6.9e-174 614.0 338 90.2
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 6.9e-174 614.0 338 89.9
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 1.2e-173 613.2 338 90.5
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 1.2e-173 613.2 332 91.6
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.2e-173 613.2 333 91.0
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 1.5e-173 612.8 338 90.2
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.5e-173 612.8 338 89.6
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 2.0e-173 612.5 338 90.5
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 2.6e-173 612.1 338 89.6
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 2.6e-173 612.1 338 90.2
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 4.5e-173 611.3 338 89.9
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 7.6e-173 610.5 339 90.0
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.0e-172 610.1 338 89.6
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 1.3e-172 609.8 338 89.6
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 1.3e-172 609.8 338 89.6
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 1.7e-172 609.4 338 89.9
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 2.9e-172 608.6 338 89.9
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 2.9e-172 608.6 338 89.9
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 2.9e-172 608.6 338 89.9
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 2.9e-172 608.6 333 90.4
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 5.0e-172 607.8 338 89.6
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 8.4e-172 607.1 337 89.9
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 8.4e-172 607.1 333 90.4
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 1.1e-171 606.7 338 89.1
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.1e-171 606.7 339 89.7
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 2.5e-171 605.5 338 89.1
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 2.5e-171 605.5 338 89.6
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 2.5e-171 605.5 338 89.1
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 2.5e-171 605.5 338 89.3
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 3.2e-171 605.1 333 90.7
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 3.2e-171 605.1 334 89.8
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 3.2e-171 605.1 334 89.2
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 3.2e-171 605.1 332 89.8
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 3.2e-171 605.1 338 89.1
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 5.5e-171 604.4 339 89.7
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 7.2e-171 604.0 334 89.5
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 9.3e-171 603.6 336 89.3
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 9.3e-171 603.6 333 89.5
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 1.2e-170 603.2 332 90.4
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 1.6e-170 602.8 337 89.3
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 2.7e-170 602.1 339 89.4
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 2.7e-170 602.1 339 89.4
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 3.6e-170 601.7 338 88.5
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 3.6e-170 601.7 334 89.2
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 4.6e-170 601.3 339 87.9
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 6.1e-170 600.9 339 88.8
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 6.1e-170 600.9 339 89.1
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 7.9e-170 600.5 339 88.8
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 3.0e-169 598.6 339 87.0
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 5.1e-169 597.8 332 89.2
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 8.7e-169 597.0 331 89.4
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 1.1e-168 596.7 332 88.9
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 4.3e-168 594.7 338 87.3
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 5.7e-168 594.3 337 87.8
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.3e-167 593.2 341 88.0
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 1.3e-167 593.2 332 88.6
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 2.8e-167 592.0 332 88.6
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 3.7e-167 591.7 341 87.7
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.7e-167 591.7 341 87.7
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 8.2e-167 590.5 332 88.0
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 1.1e-166 590.1 333 88.3
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.4e-166 589.7 338 85.8
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 1.4e-166 589.7 334 88.6
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 1.4e-166 589.7 338 85.5
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 4.1e-166 588.2 342 86.8
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 9.0e-166 587.0 341 86.8
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.2e-165 586.6 338 84.0
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 2.0e-165 585.9 318 91.2
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 1.0e-164 583.6 315 92.4
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 1.7e-164 582.8 380 79.2
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 8.5e-164 580.5 317 90.9
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 2.5e-163 578.9 336 84.5
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 2.5e-163 578.9 338 84.3
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 7.2e-163 577.4 354 82.5
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 8.8e-161 570.5 337 83.7
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 1.1e-160 570.1 337 83.4
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 1.1e-160 570.1 309 90.6
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.1e-160 570.1 336 83.0
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 2.0e-160 569.3 337 83.4
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 2.6e-160 568.9 319 89.0
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 3.3e-160 568.5 331 84.6
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 7.4e-160 567.4 337 82.5
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 7.4e-160 567.4 309 90.0
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 1.7e-159 566.2 337 83.1
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 1.7e-159 566.2 337 82.5
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.7e-159 566.2 338 81.4
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 2.8e-159 565.5 335 83.0
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 3.7e-159 565.1 337 82.8
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 3.7e-159 565.1 337 82.5
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 3.7e-159 565.1 338 82.2
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 3.7e-159 565.1 337 82.8
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 4.8e-159 564.7 338 84.9
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 6.3e-159 564.3 335 82.7
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 6.3e-159 564.3 335 83.0
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 1.4e-158 563.1 335 82.4
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 1.4e-158 563.1 335 82.7
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 1.4e-158 563.1 335 82.7
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 1.8e-158 562.8 319 86.8
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 4.1e-158 561.6 337 82.2
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 4.1e-158 561.6 335 81.8
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 5.3e-158 561.2 337 82.2
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 6.9e-158 560.8 322 87.9
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 2.6e-157 558.9 338 84.9
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 3.4e-157 558.5 335 82.1
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 4.5e-157 558.1 327 82.9
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 6.5e-156 554.3 350 79.1
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.9e-155 552.7 339 83.5
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 5.5e-155 551.2 334 80.5
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 1.4e-153 546.6 332 78.3
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 9.7e-152 540.4 338 76.6
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 7.0e-150 534.3 316 82.9
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 2.6e-149 532.3 379 74.1
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 2.2e-148 529.3 334 76.6
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.9e-147 526.2 334 76.6
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 2.5e-147 525.8 334 76.3
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 1.6e-146 523.1 420 67.4
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 2.9e-140 502.3 361 72.3
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.6e-138 496.5 338 77.8
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 2.1e-138 496.1 288 85.1
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 2.1e-138 496.1 264 93.6
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.7e-138 495.0 264 93.9
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.7e-138 495.0 264 93.9
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 5.7e-136 488.0 271 88.6
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 4.1e-134 481.9 323 72.1
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 2.7e-133 479.2 338 74.9
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 2.9e-132 475.7 338 74.6
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.6e-122 443.4 344 66.6
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 5.9e-117 424.9 238 87.0
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 1.1e-115 420.6 251 80.9
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 1.8e-113 413.3 315 62.5
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 7.0e-110 401.4 251 79.7
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 2.3e-108 396.4 241 79.3
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 6.2e-106 388.3 216 88.4
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 1.4e-102 377.1 330 58.8
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 2.3e-100 369.8 317 55.5
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 3.2e-54 216.5 134 79.9
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.5e-43 181.0 163 62.0
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 1.1e-33 148.3 180 52.8
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 1.6e-29 134.4 79 82.3
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 3.0e-28 130.2 73 84.9
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 2.2e-26 124.0 72 83.3
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 5.9e-24 115.9 74 77.0
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 3.6e-21 106.7 109 57.8
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 1.6e-16 91.3 51 86.3
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 2.3e-12 77.4 61 68.9
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 2.6e-11 73.9 41 80.5
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 5.7e-11 72.8 57 68.4
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 1.7e-10 71.2 60 65.0
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 1.7e-10 71.2 60 65.0
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 8.3e-10 68.9 100 45.0
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 9.5e-06 55.5 34 76.5


User provided reference genes

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